Doublet info:
Details
Nucleotide types:
CG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:0534:0533
Extra
PDB:
ATOM 1 O3' G A 533 5.015 132.334 101.710 1.00 63.82 O
ATOM 2 P C A 534 4.138 133.065 100.573 1.00 66.87 P
ATOM 3 OP1 C A 534 3.093 133.836 101.303 1.00 65.17 O
ATOM 4 OP2 C A 534 3.731 132.058 99.542 1.00 66.24 O
ATOM 5 O5' C A 534 5.143 134.107 99.901 1.00 65.19 O
ATOM 6 C5' C A 534 5.562 135.286 100.606 1.00 64.51 C
ATOM 7 C4' C A 534 6.697 135.963 99.872 1.00 65.55 C
ATOM 8 O4' C A 534 7.811 135.034 99.755 1.00 65.61 O
ATOM 9 C3' C A 534 6.439 136.383 98.432 1.00 66.13 C
ATOM 10 O3' C A 534 5.724 137.614 98.317 1.00 67.23 O
ATOM 11 C2' C A 534 7.858 136.496 97.891 1.00 65.73 C
ATOM 12 O2' C A 534 8.527 137.667 98.324 1.00 66.20 O
ATOM 13 C1' C A 534 8.515 135.282 98.546 1.00 63.46 C
ATOM 14 N1 C A 534 8.442 134.078 97.692 1.00 60.27 N
ATOM 15 C2 C A 534 9.340 133.955 96.611 1.00 59.96 C
ATOM 16 O2 C A 534 10.167 134.869 96.398 1.00 59.44 O
ATOM 17 N3 C A 534 9.279 132.848 95.829 1.00 58.10 N
ATOM 18 C4 C A 534 8.378 131.896 96.088 1.00 58.02 C
ATOM 19 N4 C A 534 8.354 130.820 95.297 1.00 57.95 N
ATOM 20 C5 C A 534 7.460 132.001 97.171 1.00 57.90 C
ATOM 21 C6 C A 534 7.525 133.096 97.937 1.00 58.41 C
ATOM 22 P A A 535 4.733 137.849 97.062 1.00 68.65 P
ATOM 23 OP1 A A 535 4.172 139.224 97.235 1.00 65.17 O
ATOM 24 OP2 A A 535 3.808 136.677 96.943 1.00 65.60 O
ATOM 25 O5' A A 535 5.693 137.843 95.784 1.00 66.11 O
TER
ATOM 1 O3' G B 532 5.046 126.670 102.328 1.00 65.60 O
ATOM 2 P G B 533 4.230 127.549 101.254 1.00 66.27 P
ATOM 3 OP1 G B 533 2.828 127.537 101.731 1.00 68.89 O
ATOM 4 OP2 G B 533 4.534 127.097 99.872 1.00 63.33 O
ATOM 5 O5' G B 533 4.821 129.014 101.445 1.00 62.89 O
ATOM 6 C5' G B 533 6.218 129.188 101.618 1.00 59.12 C
ATOM 7 C4' G B 533 6.527 130.508 102.258 1.00 58.08 C
ATOM 8 O4' G B 533 7.956 130.513 102.503 1.00 58.04 O
ATOM 9 C3' G B 533 6.249 131.712 101.369 1.00 59.27 C
ATOM 10 O3' G B 533 5.015 132.334 101.710 1.00 63.82 O
ATOM 11 C2' G B 533 7.466 132.607 101.584 1.00 57.01 C
ATOM 12 O2' G B 533 7.381 133.423 102.739 1.00 56.60 O
ATOM 13 C1' G B 533 8.563 131.558 101.772 1.00 54.66 C
ATOM 14 N9 G B 533 9.101 130.998 100.530 1.00 49.91 N
ATOM 15 C8 G B 533 8.719 129.842 99.888 1.00 47.02 C
ATOM 16 N7 G B 533 9.383 129.623 98.788 1.00 44.94 N
ATOM 17 C5 G B 533 10.258 130.696 98.698 1.00 46.64 C
ATOM 18 C6 G B 533 11.230 131.019 97.710 1.00 45.84 C
ATOM 19 O6 G B 533 11.521 130.405 96.677 1.00 44.30 O
ATOM 20 N1 G B 533 11.892 132.199 98.019 1.00 45.27 N
ATOM 21 C2 G B 533 11.652 132.976 99.124 1.00 46.95 C
ATOM 22 N2 G B 533 12.386 134.093 99.246 1.00 48.96 N
ATOM 23 N3 G B 533 10.757 132.688 100.044 1.00 47.69 N
ATOM 24 C4 G B 533 10.099 131.547 99.770 1.00 47.72 C
ATOM 25 P C B 534 4.138 133.065 100.573 1.00 66.87 P
ATOM 26 OP1 C B 534 3.093 133.836 101.303 1.00 65.17 O
ATOM 27 OP2 C B 534 3.731 132.058 99.542 1.00 66.24 O
ATOM 28 O5' C B 534 5.143 134.107 99.901 1.00 65.19 O
TER
ATOM 2 P C A 534 4.138 133.065 100.573 1.00 66.87 P
ATOM 3 OP1 C A 534 3.093 133.836 101.303 1.00 65.17 O
ATOM 4 OP2 C A 534 3.731 132.058 99.542 1.00 66.24 O
ATOM 5 O5' C A 534 5.143 134.107 99.901 1.00 65.19 O
ATOM 6 C5' C A 534 5.562 135.286 100.606 1.00 64.51 C
ATOM 7 C4' C A 534 6.697 135.963 99.872 1.00 65.55 C
ATOM 8 O4' C A 534 7.811 135.034 99.755 1.00 65.61 O
ATOM 9 C3' C A 534 6.439 136.383 98.432 1.00 66.13 C
ATOM 10 O3' C A 534 5.724 137.614 98.317 1.00 67.23 O
ATOM 11 C2' C A 534 7.858 136.496 97.891 1.00 65.73 C
ATOM 12 O2' C A 534 8.527 137.667 98.324 1.00 66.20 O
ATOM 13 C1' C A 534 8.515 135.282 98.546 1.00 63.46 C
ATOM 14 N1 C A 534 8.442 134.078 97.692 1.00 60.27 N
ATOM 15 C2 C A 534 9.340 133.955 96.611 1.00 59.96 C
ATOM 16 O2 C A 534 10.167 134.869 96.398 1.00 59.44 O
ATOM 17 N3 C A 534 9.279 132.848 95.829 1.00 58.10 N
ATOM 18 C4 C A 534 8.378 131.896 96.088 1.00 58.02 C
ATOM 19 N4 C A 534 8.354 130.820 95.297 1.00 57.95 N
ATOM 20 C5 C A 534 7.460 132.001 97.171 1.00 57.90 C
ATOM 21 C6 C A 534 7.525 133.096 97.937 1.00 58.41 C
ATOM 22 P A A 535 4.733 137.849 97.062 1.00 68.65 P
ATOM 23 OP1 A A 535 4.172 139.224 97.235 1.00 65.17 O
ATOM 24 OP2 A A 535 3.808 136.677 96.943 1.00 65.60 O
ATOM 25 O5' A A 535 5.693 137.843 95.784 1.00 66.11 O
TER
ATOM 1 O3' G B 532 5.046 126.670 102.328 1.00 65.60 O
ATOM 2 P G B 533 4.230 127.549 101.254 1.00 66.27 P
ATOM 3 OP1 G B 533 2.828 127.537 101.731 1.00 68.89 O
ATOM 4 OP2 G B 533 4.534 127.097 99.872 1.00 63.33 O
ATOM 5 O5' G B 533 4.821 129.014 101.445 1.00 62.89 O
ATOM 6 C5' G B 533 6.218 129.188 101.618 1.00 59.12 C
ATOM 7 C4' G B 533 6.527 130.508 102.258 1.00 58.08 C
ATOM 8 O4' G B 533 7.956 130.513 102.503 1.00 58.04 O
ATOM 9 C3' G B 533 6.249 131.712 101.369 1.00 59.27 C
ATOM 10 O3' G B 533 5.015 132.334 101.710 1.00 63.82 O
ATOM 11 C2' G B 533 7.466 132.607 101.584 1.00 57.01 C
ATOM 12 O2' G B 533 7.381 133.423 102.739 1.00 56.60 O
ATOM 13 C1' G B 533 8.563 131.558 101.772 1.00 54.66 C
ATOM 14 N9 G B 533 9.101 130.998 100.530 1.00 49.91 N
ATOM 15 C8 G B 533 8.719 129.842 99.888 1.00 47.02 C
ATOM 16 N7 G B 533 9.383 129.623 98.788 1.00 44.94 N
ATOM 17 C5 G B 533 10.258 130.696 98.698 1.00 46.64 C
ATOM 18 C6 G B 533 11.230 131.019 97.710 1.00 45.84 C
ATOM 19 O6 G B 533 11.521 130.405 96.677 1.00 44.30 O
ATOM 20 N1 G B 533 11.892 132.199 98.019 1.00 45.27 N
ATOM 21 C2 G B 533 11.652 132.976 99.124 1.00 46.95 C
ATOM 22 N2 G B 533 12.386 134.093 99.246 1.00 48.96 N
ATOM 23 N3 G B 533 10.757 132.688 100.044 1.00 47.69 N
ATOM 24 C4 G B 533 10.099 131.547 99.770 1.00 47.72 C
ATOM 25 P C B 534 4.138 133.065 100.573 1.00 66.87 P
ATOM 26 OP1 C B 534 3.093 133.836 101.303 1.00 65.17 O
ATOM 27 OP2 C B 534 3.731 132.058 99.542 1.00 66.24 O
ATOM 28 O5' C B 534 5.143 134.107 99.901 1.00 65.19 O
TER
Atoms:
C2: (9.340,133.955,96.611)
OP1: (3.093,133.836,101.303)
OP2: (3.731,132.058,99.542)
C4: (8.378,131.896,96.088)
O5': (5.143,134.107,99.901)
C3': (6.439,136.383,98.432)
C1': (8.515,135.282,98.546)
O4': (7.811,135.034,99.755)
C5': (5.562,135.286,100.606)
P: (4.138,133.065,100.573)
O2: (10.167,134.869,96.398)
C4': (6.697,135.963,99.872)
C2': (7.858,136.496,97.891)
O2': (8.527,137.667,98.324)
N1: (8.442,134.078,97.692)
N3: (9.279,132.848,95.829)
N4: (8.354,130.820,95.297)
C6: (7.525,133.096,97.937)
C5: (7.460,132.001,97.171)
O3': (5.724,137.614,98.317)
OP1: (3.093,133.836,101.303)
OP2: (3.731,132.058,99.542)
C4: (8.378,131.896,96.088)
O5': (5.143,134.107,99.901)
C3': (6.439,136.383,98.432)
C1': (8.515,135.282,98.546)
O4': (7.811,135.034,99.755)
C5': (5.562,135.286,100.606)
P: (4.138,133.065,100.573)
O2: (10.167,134.869,96.398)
C4': (6.697,135.963,99.872)
C2': (7.858,136.496,97.891)
O2': (8.527,137.667,98.324)
N1: (8.442,134.078,97.692)
N3: (9.279,132.848,95.829)
N4: (8.354,130.820,95.297)
C6: (7.525,133.096,97.937)
C5: (7.460,132.001,97.171)
O3': (5.724,137.614,98.317)
OP1: (2.828,127.537,101.731)
OP2: (4.534,127.097,99.872)
C3': (6.249,131.712,101.369)
C1': (8.563,131.558,101.772)
C5': (6.218,129.188,101.618)
O6: (11.521,130.405,96.677)
O4': (7.956,130.513,102.503)
C8: (8.719,129.842,99.888)
C2: (11.652,132.976,99.124)
C6: (11.230,131.019,97.710)
C5: (10.258,130.696,98.698)
C4: (10.099,131.547,99.770)
P: (4.230,127.549,101.254)
C4': (6.527,130.508,102.258)
C2': (7.466,132.607,101.584)
O2': (7.381,133.423,102.739)
N1: (11.892,132.199,98.019)
N2: (12.386,134.093,99.246)
N3: (10.757,132.688,100.044)
N7: (9.383,129.623,98.788)
N9: (9.101,130.998,100.530)
O5': (4.821,129.014,101.445)
O3': (5.015,132.334,101.710)
OP2: (4.534,127.097,99.872)
C3': (6.249,131.712,101.369)
C1': (8.563,131.558,101.772)
C5': (6.218,129.188,101.618)
O6: (11.521,130.405,96.677)
O4': (7.956,130.513,102.503)
C8: (8.719,129.842,99.888)
C2: (11.652,132.976,99.124)
C6: (11.230,131.019,97.710)
C5: (10.258,130.696,98.698)
C4: (10.099,131.547,99.770)
P: (4.230,127.549,101.254)
C4': (6.527,130.508,102.258)
C2': (7.466,132.607,101.584)
O2': (7.381,133.423,102.739)
N1: (11.892,132.199,98.019)
N2: (12.386,134.093,99.246)
N3: (10.757,132.688,100.044)
N7: (9.383,129.623,98.788)
N9: (9.101,130.998,100.530)
O5': (4.821,129.014,101.445)
O3': (5.015,132.334,101.710)
Image (generated by PyMOL):