ClaRNA

Doublet info:

Details

Nucleotide types: CG
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 3U5D:1944:1943

Extra

PDB:
ATOM 1 O3' G A 943 20.735 -42.361 15.589 1.00 56.32 O
ATOM 2 P C A 944 19.527 -41.537 14.898 1.00 60.59 P
ATOM 3 OP1 C A 944 19.544 -41.932 13.474 1.00 61.18 O
ATOM 4 OP2 C A 944 19.647 -40.118 15.235 1.00 60.16 O
ATOM 5 O5' C A 944 18.246 -42.119 15.602 1.00 60.65 O
ATOM 6 C5' C A 944 18.182 -43.476 16.005 1.00 60.82 C
ATOM 7 C4' C A 944 17.117 -43.652 17.040 1.00 60.65 C
ATOM 8 O4' C A 944 17.668 -43.304 18.365 1.00 60.06 O
ATOM 9 C3' C A 944 15.910 -42.743 16.816 1.00 60.70 C
ATOM 10 O3' C A 944 14.692 -43.455 16.971 1.00 60.98 O
ATOM 11 C2' C A 944 16.052 -41.683 17.905 1.00 60.08 C
ATOM 12 O2' C A 944 14.840 -41.091 18.355 1.00 59.99 O
ATOM 13 C1' C A 944 16.782 -42.435 19.021 1.00 59.77 C
ATOM 14 N1 C A 944 17.524 -41.503 19.885 1.00 59.19 N
ATOM 15 C2 C A 944 17.440 -41.446 21.269 1.00 58.76 C
ATOM 16 O2 C A 944 16.930 -42.355 21.924 1.00 58.82 O
ATOM 17 N3 C A 944 18.033 -40.408 21.870 1.00 58.28 N
ATOM 18 C4 C A 944 18.611 -39.442 21.182 1.00 58.22 C
ATOM 19 N4 C A 944 19.173 -38.441 21.849 1.00 57.74 N
ATOM 20 C5 C A 944 18.656 -39.427 19.782 1.00 58.64 C
ATOM 21 C6 C A 944 18.075 -40.454 19.200 1.00 59.12 C
ATOM 22 P G A 945 13.445 -43.076 16.034 1.00 77.95 P
ATOM 23 OP1 G A 945 13.979 -42.343 14.868 1.00 78.11 O
ATOM 24 OP2 G A 945 12.432 -42.413 16.894 1.00 77.67 O
ATOM 25 O5' G A 945 12.949 -44.500 15.562 1.00 78.52 O
TER

ATOM 1 O3' A B 942 25.731 -39.081 15.623 1.00 51.18 O
ATOM 2 P G B 943 24.191 -38.763 15.294 1.00 55.26 P
ATOM 3 OP1 G B 943 24.028 -38.869 13.807 1.00 55.81 O
ATOM 4 OP2 G B 943 23.839 -37.480 15.973 1.00 54.82 O
ATOM 5 O5' G B 943 23.416 -39.946 15.998 1.00 55.35 O
ATOM 6 C5' G B 943 23.705 -41.291 15.698 1.00 55.70 C
ATOM 7 C4' G B 943 22.922 -42.191 16.594 1.00 55.68 C
ATOM 8 O4' G B 943 23.405 -42.088 17.961 1.00 55.15 O
ATOM 9 C3' G B 943 21.451 -41.869 16.699 1.00 55.75 C
ATOM 10 O3' G B 943 20.735 -42.361 15.589 1.00 56.32 O
ATOM 11 C2' G B 943 21.074 -42.554 17.999 1.00 55.51 C
ATOM 12 O2' G B 943 20.861 -43.937 17.760 1.00 55.93 O
ATOM 13 C1' G B 943 22.360 -42.398 18.840 1.00 55.05 C
ATOM 14 N9 G B 943 22.272 -41.332 19.862 1.00 54.51 N
ATOM 15 C8 G B 943 22.778 -40.072 19.710 1.00 54.23 C
ATOM 16 N7 G B 943 22.623 -39.292 20.751 1.00 53.77 N
ATOM 17 C5 G B 943 22.001 -40.109 21.671 1.00 53.73 C
ATOM 18 C6 G B 943 21.606 -39.806 22.996 1.00 53.31 C
ATOM 19 O6 G B 943 21.741 -38.732 23.579 1.00 52.91 O
ATOM 20 N1 G B 943 20.992 -40.876 23.635 1.00 53.42 N
ATOM 21 C2 G B 943 20.819 -42.087 23.037 1.00 53.87 C
ATOM 22 N2 G B 943 20.233 -42.996 23.805 1.00 53.92 N
ATOM 23 N3 G B 943 21.191 -42.390 21.804 1.00 54.26 N
ATOM 24 C4 G B 943 21.773 -41.364 21.157 1.00 54.17 C
ATOM 25 P C B 944 19.527 -41.537 14.898 1.00 60.59 P
ATOM 26 OP1 C B 944 19.544 -41.932 13.474 1.00 61.18 O
ATOM 27 OP2 C B 944 19.647 -40.118 15.235 1.00 60.16 O
ATOM 28 O5' C B 944 18.246 -42.119 15.602 1.00 60.65 O
TER

Atoms:
C2: (17.440,-41.446,21.269)
OP1: (19.544,-41.932,13.474)
OP2: (19.647,-40.118,15.235)
C4: (18.611,-39.442,21.182)
O5': (18.246,-42.119,15.602)
C3': (15.910,-42.743,16.816)
C1': (16.782,-42.435,19.021)
O4': (17.668,-43.304,18.365)
C5': (18.182,-43.476,16.005)
P: (19.527,-41.537,14.898)
O2: (16.930,-42.355,21.924)
C4': (17.117,-43.652,17.040)
C2': (16.052,-41.683,17.905)
O2': (14.840,-41.091,18.355)
N1: (17.524,-41.503,19.885)
N3: (18.033,-40.408,21.870)
N4: (19.173,-38.441,21.849)
C6: (18.075,-40.454,19.200)
C5: (18.656,-39.427,19.782)
O3': (14.692,-43.455,16.971)
OP1: (24.028,-38.869,13.807)
OP2: (23.839,-37.480,15.973)
C3': (21.451,-41.869,16.699)
C1': (22.360,-42.398,18.840)
C5': (23.705,-41.291,15.698)
O6: (21.741,-38.732,23.579)
O4': (23.405,-42.088,17.961)
C8: (22.778,-40.072,19.710)
C2: (20.819,-42.087,23.037)
C6: (21.606,-39.806,22.996)
C5: (22.001,-40.109,21.671)
C4: (21.773,-41.364,21.157)
P: (24.191,-38.763,15.294)
C4': (22.922,-42.191,16.594)
C2': (21.074,-42.554,17.999)
O2': (20.861,-43.937,17.760)
N1: (20.992,-40.876,23.635)
N2: (20.233,-42.996,23.805)
N3: (21.191,-42.390,21.804)
N7: (22.623,-39.292,20.751)
N9: (22.272,-41.332,19.862)
O5': (23.416,-39.946,15.998)
O3': (20.735,-42.361,15.589)
Image (generated by PyMOL):
PyMOL image
show in jmol