Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:393:394
Extra
PDB:
ATOM 1 O3' C A 92 31.308 -21.465 18.660 1.00 44.99 O
ATOM 2 P C A 93 32.475 -22.455 18.191 1.00 44.28 P
ATOM 3 OP1 C A 93 31.834 -23.608 17.521 1.00 44.85 O
ATOM 4 OP2 C A 93 33.338 -22.692 19.368 1.00 43.53 O
ATOM 5 O5' C A 93 33.254 -21.579 17.124 1.00 44.74 O
ATOM 6 C5' C A 93 32.577 -21.034 16.008 1.00 45.41 C
ATOM 7 C4' C A 93 33.518 -20.294 15.128 1.00 45.77 C
ATOM 8 O4' C A 93 33.940 -19.071 15.761 1.00 45.27 O
ATOM 9 C3' C A 93 34.808 -21.004 14.820 1.00 45.89 C
ATOM 10 O3' C A 93 34.619 -21.997 13.838 1.00 46.58 O
ATOM 11 C2' C A 93 35.690 -19.848 14.392 1.00 45.97 C
ATOM 12 O2' C A 93 35.314 -19.399 13.117 1.00 46.74 O
ATOM 13 C1' C A 93 35.265 -18.786 15.393 1.00 45.34 C
ATOM 14 N1 C A 93 36.077 -18.828 16.598 1.00 44.55 N
ATOM 15 C2 C A 93 37.316 -18.173 16.589 1.00 44.40 C
ATOM 16 O2 C A 93 37.613 -17.580 15.532 1.00 44.97 O
ATOM 17 N3 C A 93 38.096 -18.219 17.709 1.00 43.68 N
ATOM 18 C4 C A 93 37.639 -18.885 18.776 1.00 43.14 C
ATOM 19 N4 C A 93 38.346 -18.935 19.879 1.00 42.45 N
ATOM 20 C5 C A 93 36.387 -19.544 18.794 1.00 43.30 C
ATOM 21 C6 C A 93 35.620 -19.493 17.706 1.00 44.00 C
ATOM 22 P A A 94 35.827 -22.873 13.270 1.00 46.36 P
ATOM 23 OP1 A A 94 35.240 -23.948 12.391 1.00 47.06 O
ATOM 24 OP2 A A 94 36.658 -23.280 14.440 1.00 45.62 O
ATOM 25 O5' A A 94 36.606 -21.802 12.390 1.00 46.73 O
TER
ATOM 1 O3' C B 93 34.619 -21.997 13.838 1.00 46.58 O
ATOM 2 P A B 94 35.827 -22.873 13.270 1.00 46.36 P
ATOM 3 OP1 A B 94 35.240 -23.948 12.391 1.00 47.06 O
ATOM 4 OP2 A B 94 36.658 -23.280 14.440 1.00 45.62 O
ATOM 5 O5' A B 94 36.606 -21.802 12.390 1.00 46.73 O
ATOM 6 C5' A B 94 37.618 -22.197 11.516 1.00 47.23 C
ATOM 7 C4' A B 94 38.486 -21.056 11.154 1.00 47.29 C
ATOM 8 O4' A B 94 38.427 -20.042 12.176 1.00 46.57 O
ATOM 9 C3' A B 94 39.942 -21.389 11.058 1.00 47.27 C
ATOM 10 O3' A B 94 40.243 -22.032 9.841 1.00 48.08 O
ATOM 11 C2' A B 94 40.592 -20.020 11.252 1.00 46.99 C
ATOM 12 O2' A B 94 40.387 -19.201 10.109 1.00 47.66 O
ATOM 13 C1' A B 94 39.710 -19.462 12.353 1.00 46.32 C
ATOM 14 N9 A B 94 40.176 -19.824 13.693 1.00 45.49 N
ATOM 15 C8 A B 94 39.411 -20.601 14.523 1.00 45.10 C
ATOM 16 N7 A B 94 39.927 -20.829 15.703 1.00 44.37 N
ATOM 17 C5 A B 94 41.118 -20.157 15.632 1.00 44.27 C
ATOM 18 C6 A B 94 42.085 -20.035 16.579 1.00 43.62 C
ATOM 19 N6 A B 94 41.982 -20.609 17.756 1.00 42.97 N
ATOM 20 N1 A B 94 43.132 -19.303 16.287 1.00 43.68 N
ATOM 21 C2 A B 94 43.189 -18.752 15.088 1.00 44.37 C
ATOM 22 N3 A B 94 42.344 -18.788 14.080 1.00 45.04 N
ATOM 23 C4 A B 94 41.292 -19.521 14.424 1.00 44.95 C
ATOM 24 P U B 95 40.823 -23.503 9.857 1.00 46.50 P
ATOM 25 OP1 U B 95 40.670 -24.077 8.508 1.00 47.44 O
ATOM 26 OP2 U B 95 40.219 -24.203 11.003 1.00 45.89 O
ATOM 27 O5' U B 95 42.355 -23.205 10.150 1.00 46.19 O
TER
ATOM 2 P C A 93 32.475 -22.455 18.191 1.00 44.28 P
ATOM 3 OP1 C A 93 31.834 -23.608 17.521 1.00 44.85 O
ATOM 4 OP2 C A 93 33.338 -22.692 19.368 1.00 43.53 O
ATOM 5 O5' C A 93 33.254 -21.579 17.124 1.00 44.74 O
ATOM 6 C5' C A 93 32.577 -21.034 16.008 1.00 45.41 C
ATOM 7 C4' C A 93 33.518 -20.294 15.128 1.00 45.77 C
ATOM 8 O4' C A 93 33.940 -19.071 15.761 1.00 45.27 O
ATOM 9 C3' C A 93 34.808 -21.004 14.820 1.00 45.89 C
ATOM 10 O3' C A 93 34.619 -21.997 13.838 1.00 46.58 O
ATOM 11 C2' C A 93 35.690 -19.848 14.392 1.00 45.97 C
ATOM 12 O2' C A 93 35.314 -19.399 13.117 1.00 46.74 O
ATOM 13 C1' C A 93 35.265 -18.786 15.393 1.00 45.34 C
ATOM 14 N1 C A 93 36.077 -18.828 16.598 1.00 44.55 N
ATOM 15 C2 C A 93 37.316 -18.173 16.589 1.00 44.40 C
ATOM 16 O2 C A 93 37.613 -17.580 15.532 1.00 44.97 O
ATOM 17 N3 C A 93 38.096 -18.219 17.709 1.00 43.68 N
ATOM 18 C4 C A 93 37.639 -18.885 18.776 1.00 43.14 C
ATOM 19 N4 C A 93 38.346 -18.935 19.879 1.00 42.45 N
ATOM 20 C5 C A 93 36.387 -19.544 18.794 1.00 43.30 C
ATOM 21 C6 C A 93 35.620 -19.493 17.706 1.00 44.00 C
ATOM 22 P A A 94 35.827 -22.873 13.270 1.00 46.36 P
ATOM 23 OP1 A A 94 35.240 -23.948 12.391 1.00 47.06 O
ATOM 24 OP2 A A 94 36.658 -23.280 14.440 1.00 45.62 O
ATOM 25 O5' A A 94 36.606 -21.802 12.390 1.00 46.73 O
TER
ATOM 1 O3' C B 93 34.619 -21.997 13.838 1.00 46.58 O
ATOM 2 P A B 94 35.827 -22.873 13.270 1.00 46.36 P
ATOM 3 OP1 A B 94 35.240 -23.948 12.391 1.00 47.06 O
ATOM 4 OP2 A B 94 36.658 -23.280 14.440 1.00 45.62 O
ATOM 5 O5' A B 94 36.606 -21.802 12.390 1.00 46.73 O
ATOM 6 C5' A B 94 37.618 -22.197 11.516 1.00 47.23 C
ATOM 7 C4' A B 94 38.486 -21.056 11.154 1.00 47.29 C
ATOM 8 O4' A B 94 38.427 -20.042 12.176 1.00 46.57 O
ATOM 9 C3' A B 94 39.942 -21.389 11.058 1.00 47.27 C
ATOM 10 O3' A B 94 40.243 -22.032 9.841 1.00 48.08 O
ATOM 11 C2' A B 94 40.592 -20.020 11.252 1.00 46.99 C
ATOM 12 O2' A B 94 40.387 -19.201 10.109 1.00 47.66 O
ATOM 13 C1' A B 94 39.710 -19.462 12.353 1.00 46.32 C
ATOM 14 N9 A B 94 40.176 -19.824 13.693 1.00 45.49 N
ATOM 15 C8 A B 94 39.411 -20.601 14.523 1.00 45.10 C
ATOM 16 N7 A B 94 39.927 -20.829 15.703 1.00 44.37 N
ATOM 17 C5 A B 94 41.118 -20.157 15.632 1.00 44.27 C
ATOM 18 C6 A B 94 42.085 -20.035 16.579 1.00 43.62 C
ATOM 19 N6 A B 94 41.982 -20.609 17.756 1.00 42.97 N
ATOM 20 N1 A B 94 43.132 -19.303 16.287 1.00 43.68 N
ATOM 21 C2 A B 94 43.189 -18.752 15.088 1.00 44.37 C
ATOM 22 N3 A B 94 42.344 -18.788 14.080 1.00 45.04 N
ATOM 23 C4 A B 94 41.292 -19.521 14.424 1.00 44.95 C
ATOM 24 P U B 95 40.823 -23.503 9.857 1.00 46.50 P
ATOM 25 OP1 U B 95 40.670 -24.077 8.508 1.00 47.44 O
ATOM 26 OP2 U B 95 40.219 -24.203 11.003 1.00 45.89 O
ATOM 27 O5' U B 95 42.355 -23.205 10.150 1.00 46.19 O
TER
Atoms:
C2: (37.316,-18.173,16.589)
OP1: (31.834,-23.608,17.521)
OP2: (33.338,-22.692,19.368)
C4: (37.639,-18.885,18.776)
O5': (33.254,-21.579,17.124)
C3': (34.808,-21.004,14.820)
C1': (35.265,-18.786,15.393)
O4': (33.940,-19.071,15.761)
C5': (32.577,-21.034,16.008)
P: (32.475,-22.455,18.191)
O2: (37.613,-17.580,15.532)
C4': (33.518,-20.294,15.128)
C2': (35.690,-19.848,14.392)
O2': (35.314,-19.399,13.117)
N1: (36.077,-18.828,16.598)
N3: (38.096,-18.219,17.709)
N4: (38.346,-18.935,19.879)
C6: (35.620,-19.493,17.706)
C5: (36.387,-19.544,18.794)
O3': (34.619,-21.997,13.838)
OP1: (31.834,-23.608,17.521)
OP2: (33.338,-22.692,19.368)
C4: (37.639,-18.885,18.776)
O5': (33.254,-21.579,17.124)
C3': (34.808,-21.004,14.820)
C1': (35.265,-18.786,15.393)
O4': (33.940,-19.071,15.761)
C5': (32.577,-21.034,16.008)
P: (32.475,-22.455,18.191)
O2: (37.613,-17.580,15.532)
C4': (33.518,-20.294,15.128)
C2': (35.690,-19.848,14.392)
O2': (35.314,-19.399,13.117)
N1: (36.077,-18.828,16.598)
N3: (38.096,-18.219,17.709)
N4: (38.346,-18.935,19.879)
C6: (35.620,-19.493,17.706)
C5: (36.387,-19.544,18.794)
O3': (34.619,-21.997,13.838)
OP1: (35.240,-23.948,12.391)
OP2: (36.658,-23.280,14.440)
C3': (39.942,-21.389,11.058)
C1': (39.710,-19.462,12.353)
C5': (37.618,-22.197,11.516)
O4': (38.427,-20.042,12.176)
C8: (39.411,-20.601,14.523)
O2': (40.387,-19.201,10.109)
C6: (42.085,-20.035,16.579)
C5: (41.118,-20.157,15.632)
C4: (41.292,-19.521,14.424)
P: (35.827,-22.873,13.270)
C4': (38.486,-21.056,11.154)
C2': (40.592,-20.020,11.252)
C2: (43.189,-18.752,15.088)
N1: (43.132,-19.303,16.287)
N3: (42.344,-18.788,14.080)
N6: (41.982,-20.609,17.756)
N7: (39.927,-20.829,15.703)
N9: (40.176,-19.824,13.693)
O5': (36.606,-21.802,12.390)
O3': (40.243,-22.032,9.841)
OP2: (36.658,-23.280,14.440)
C3': (39.942,-21.389,11.058)
C1': (39.710,-19.462,12.353)
C5': (37.618,-22.197,11.516)
O4': (38.427,-20.042,12.176)
C8: (39.411,-20.601,14.523)
O2': (40.387,-19.201,10.109)
C6: (42.085,-20.035,16.579)
C5: (41.118,-20.157,15.632)
C4: (41.292,-19.521,14.424)
P: (35.827,-22.873,13.270)
C4': (38.486,-21.056,11.154)
C2': (40.592,-20.020,11.252)
C2: (43.189,-18.752,15.088)
N1: (43.132,-19.303,16.287)
N3: (42.344,-18.788,14.080)
N6: (41.982,-20.609,17.756)
N7: (39.927,-20.829,15.703)
N9: (40.176,-19.824,13.693)
O5': (36.606,-21.802,12.390)
O3': (40.243,-22.032,9.841)
Image (generated by PyMOL):