Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:0289:0290
Extra
PDB:
ATOM 1 O3' U A 288 37.603 138.711 24.057 1.00 58.52 O
ATOM 2 P C A 289 36.021 138.944 24.271 1.00 60.99 P
ATOM 3 OP1 C A 289 35.870 140.183 25.079 1.00 58.35 O
ATOM 4 OP2 C A 289 35.422 137.671 24.760 1.00 59.05 O
ATOM 5 O5' C A 289 35.457 139.222 22.802 1.00 60.40 O
ATOM 6 C5' C A 289 35.899 140.370 22.052 1.00 60.48 C
ATOM 7 C4' C A 289 35.429 140.301 20.613 1.00 60.20 C
ATOM 8 O4' C A 289 35.937 139.105 19.964 1.00 60.14 O
ATOM 9 C3' C A 289 33.935 140.205 20.364 1.00 60.84 C
ATOM 10 O3' C A 289 33.272 141.452 20.516 1.00 60.46 O
ATOM 11 C2' C A 289 33.902 139.745 18.915 1.00 62.18 C
ATOM 12 O2' C A 289 34.139 140.789 17.992 1.00 63.84 O
ATOM 13 C1' C A 289 35.076 138.763 18.885 1.00 62.83 C
ATOM 14 N1 C A 289 34.611 137.370 19.034 1.00 65.13 N
ATOM 15 C2 C A 289 33.858 136.799 17.987 1.00 66.82 C
ATOM 16 O2 C A 289 33.643 137.468 16.959 1.00 68.48 O
ATOM 17 N3 C A 289 33.391 135.540 18.120 1.00 66.96 N
ATOM 18 C4 C A 289 33.655 134.846 19.226 1.00 67.10 C
ATOM 19 N4 C A 289 33.174 133.605 19.308 1.00 68.08 N
ATOM 20 C5 C A 289 34.427 135.391 20.296 1.00 66.61 C
ATOM 21 C6 C A 289 34.881 136.644 20.160 1.00 65.23 C
ATOM 22 P A A 290 31.672 141.489 20.621 1.00 59.70 P
ATOM 23 OP1 A A 290 31.264 142.869 20.984 1.00 58.29 O
ATOM 24 OP2 A A 290 31.253 140.353 21.475 1.00 59.79 O
ATOM 25 O5' A A 290 31.183 141.189 19.136 1.00 58.86 O
TER
ATOM 1 O3' C B 289 33.272 141.452 20.516 1.00 60.46 O
ATOM 2 P A B 290 31.672 141.489 20.621 1.00 59.70 P
ATOM 3 OP1 A B 290 31.264 142.869 20.984 1.00 58.29 O
ATOM 4 OP2 A B 290 31.253 140.353 21.475 1.00 59.79 O
ATOM 5 O5' A B 290 31.183 141.189 19.136 1.00 58.86 O
ATOM 6 C5' A B 290 31.417 142.131 18.073 1.00 60.17 C
ATOM 7 C4' A B 290 30.675 141.703 16.829 1.00 60.49 C
ATOM 8 O4' A B 290 31.188 140.423 16.386 1.00 61.01 O
ATOM 9 C3' A B 290 29.187 141.469 17.018 1.00 60.98 C
ATOM 10 O3' A B 290 28.461 142.681 16.890 1.00 62.55 O
ATOM 11 C2' A B 290 28.865 140.495 15.899 1.00 61.31 C
ATOM 12 O2' A B 290 28.731 141.150 14.655 1.00 61.79 O
ATOM 13 C1' A B 290 30.127 139.628 15.890 1.00 61.50 C
ATOM 14 N9 A B 290 30.036 138.431 16.727 1.00 63.21 N
ATOM 15 C8 A B 290 30.483 138.271 18.019 1.00 63.76 C
ATOM 16 N7 A B 290 30.282 137.071 18.504 1.00 64.02 N
ATOM 17 C5 A B 290 29.657 136.394 17.466 1.00 64.49 C
ATOM 18 C6 A B 290 29.188 135.076 17.347 1.00 64.97 C
ATOM 19 N6 A B 290 29.292 134.162 18.315 1.00 64.37 N
ATOM 20 N1 A B 290 28.604 134.721 16.181 1.00 66.09 N
ATOM 21 C2 A B 290 28.511 135.633 15.207 1.00 65.55 C
ATOM 22 N3 A B 290 28.920 136.898 15.196 1.00 65.22 N
ATOM 23 C4 A B 290 29.491 137.221 16.369 1.00 64.35 C
ATOM 24 P C B 291 27.118 142.896 17.738 1.00 63.94 P
ATOM 25 OP1 C B 291 26.602 144.249 17.391 1.00 63.01 O
ATOM 26 OP2 C B 291 27.405 142.561 19.158 1.00 64.61 O
ATOM 27 O5' C B 291 26.131 141.782 17.168 1.00 64.02 O
TER
ATOM 2 P C A 289 36.021 138.944 24.271 1.00 60.99 P
ATOM 3 OP1 C A 289 35.870 140.183 25.079 1.00 58.35 O
ATOM 4 OP2 C A 289 35.422 137.671 24.760 1.00 59.05 O
ATOM 5 O5' C A 289 35.457 139.222 22.802 1.00 60.40 O
ATOM 6 C5' C A 289 35.899 140.370 22.052 1.00 60.48 C
ATOM 7 C4' C A 289 35.429 140.301 20.613 1.00 60.20 C
ATOM 8 O4' C A 289 35.937 139.105 19.964 1.00 60.14 O
ATOM 9 C3' C A 289 33.935 140.205 20.364 1.00 60.84 C
ATOM 10 O3' C A 289 33.272 141.452 20.516 1.00 60.46 O
ATOM 11 C2' C A 289 33.902 139.745 18.915 1.00 62.18 C
ATOM 12 O2' C A 289 34.139 140.789 17.992 1.00 63.84 O
ATOM 13 C1' C A 289 35.076 138.763 18.885 1.00 62.83 C
ATOM 14 N1 C A 289 34.611 137.370 19.034 1.00 65.13 N
ATOM 15 C2 C A 289 33.858 136.799 17.987 1.00 66.82 C
ATOM 16 O2 C A 289 33.643 137.468 16.959 1.00 68.48 O
ATOM 17 N3 C A 289 33.391 135.540 18.120 1.00 66.96 N
ATOM 18 C4 C A 289 33.655 134.846 19.226 1.00 67.10 C
ATOM 19 N4 C A 289 33.174 133.605 19.308 1.00 68.08 N
ATOM 20 C5 C A 289 34.427 135.391 20.296 1.00 66.61 C
ATOM 21 C6 C A 289 34.881 136.644 20.160 1.00 65.23 C
ATOM 22 P A A 290 31.672 141.489 20.621 1.00 59.70 P
ATOM 23 OP1 A A 290 31.264 142.869 20.984 1.00 58.29 O
ATOM 24 OP2 A A 290 31.253 140.353 21.475 1.00 59.79 O
ATOM 25 O5' A A 290 31.183 141.189 19.136 1.00 58.86 O
TER
ATOM 1 O3' C B 289 33.272 141.452 20.516 1.00 60.46 O
ATOM 2 P A B 290 31.672 141.489 20.621 1.00 59.70 P
ATOM 3 OP1 A B 290 31.264 142.869 20.984 1.00 58.29 O
ATOM 4 OP2 A B 290 31.253 140.353 21.475 1.00 59.79 O
ATOM 5 O5' A B 290 31.183 141.189 19.136 1.00 58.86 O
ATOM 6 C5' A B 290 31.417 142.131 18.073 1.00 60.17 C
ATOM 7 C4' A B 290 30.675 141.703 16.829 1.00 60.49 C
ATOM 8 O4' A B 290 31.188 140.423 16.386 1.00 61.01 O
ATOM 9 C3' A B 290 29.187 141.469 17.018 1.00 60.98 C
ATOM 10 O3' A B 290 28.461 142.681 16.890 1.00 62.55 O
ATOM 11 C2' A B 290 28.865 140.495 15.899 1.00 61.31 C
ATOM 12 O2' A B 290 28.731 141.150 14.655 1.00 61.79 O
ATOM 13 C1' A B 290 30.127 139.628 15.890 1.00 61.50 C
ATOM 14 N9 A B 290 30.036 138.431 16.727 1.00 63.21 N
ATOM 15 C8 A B 290 30.483 138.271 18.019 1.00 63.76 C
ATOM 16 N7 A B 290 30.282 137.071 18.504 1.00 64.02 N
ATOM 17 C5 A B 290 29.657 136.394 17.466 1.00 64.49 C
ATOM 18 C6 A B 290 29.188 135.076 17.347 1.00 64.97 C
ATOM 19 N6 A B 290 29.292 134.162 18.315 1.00 64.37 N
ATOM 20 N1 A B 290 28.604 134.721 16.181 1.00 66.09 N
ATOM 21 C2 A B 290 28.511 135.633 15.207 1.00 65.55 C
ATOM 22 N3 A B 290 28.920 136.898 15.196 1.00 65.22 N
ATOM 23 C4 A B 290 29.491 137.221 16.369 1.00 64.35 C
ATOM 24 P C B 291 27.118 142.896 17.738 1.00 63.94 P
ATOM 25 OP1 C B 291 26.602 144.249 17.391 1.00 63.01 O
ATOM 26 OP2 C B 291 27.405 142.561 19.158 1.00 64.61 O
ATOM 27 O5' C B 291 26.131 141.782 17.168 1.00 64.02 O
TER
Atoms:
C2: (33.858,136.799,17.987)
OP1: (35.870,140.183,25.079)
OP2: (35.422,137.671,24.760)
C4: (33.655,134.846,19.226)
O5': (35.457,139.222,22.802)
C3': (33.935,140.205,20.364)
C1': (35.076,138.763,18.885)
O4': (35.937,139.105,19.964)
C5': (35.899,140.370,22.052)
P: (36.021,138.944,24.271)
O2: (33.643,137.468,16.959)
C4': (35.429,140.301,20.613)
C2': (33.902,139.745,18.915)
O2': (34.139,140.789,17.992)
N1: (34.611,137.370,19.034)
N3: (33.391,135.540,18.120)
N4: (33.174,133.605,19.308)
C6: (34.881,136.644,20.160)
C5: (34.427,135.391,20.296)
O3': (33.272,141.452,20.516)
OP1: (35.870,140.183,25.079)
OP2: (35.422,137.671,24.760)
C4: (33.655,134.846,19.226)
O5': (35.457,139.222,22.802)
C3': (33.935,140.205,20.364)
C1': (35.076,138.763,18.885)
O4': (35.937,139.105,19.964)
C5': (35.899,140.370,22.052)
P: (36.021,138.944,24.271)
O2: (33.643,137.468,16.959)
C4': (35.429,140.301,20.613)
C2': (33.902,139.745,18.915)
O2': (34.139,140.789,17.992)
N1: (34.611,137.370,19.034)
N3: (33.391,135.540,18.120)
N4: (33.174,133.605,19.308)
C6: (34.881,136.644,20.160)
C5: (34.427,135.391,20.296)
O3': (33.272,141.452,20.516)
OP1: (31.264,142.869,20.984)
OP2: (31.253,140.353,21.475)
C3': (29.187,141.469,17.018)
C1': (30.127,139.628,15.890)
C5': (31.417,142.131,18.073)
O4': (31.188,140.423,16.386)
C8: (30.483,138.271,18.019)
O2': (28.731,141.150,14.655)
C6: (29.188,135.076,17.347)
C5: (29.657,136.394,17.466)
C4: (29.491,137.221,16.369)
P: (31.672,141.489,20.621)
C4': (30.675,141.703,16.829)
C2': (28.865,140.495,15.899)
C2: (28.511,135.633,15.207)
N1: (28.604,134.721,16.181)
N3: (28.920,136.898,15.196)
N6: (29.292,134.162,18.315)
N7: (30.282,137.071,18.504)
N9: (30.036,138.431,16.727)
O5': (31.183,141.189,19.136)
O3': (28.461,142.681,16.890)
OP2: (31.253,140.353,21.475)
C3': (29.187,141.469,17.018)
C1': (30.127,139.628,15.890)
C5': (31.417,142.131,18.073)
O4': (31.188,140.423,16.386)
C8: (30.483,138.271,18.019)
O2': (28.731,141.150,14.655)
C6: (29.188,135.076,17.347)
C5: (29.657,136.394,17.466)
C4: (29.491,137.221,16.369)
P: (31.672,141.489,20.621)
C4': (30.675,141.703,16.829)
C2': (28.865,140.495,15.899)
C2: (28.511,135.633,15.207)
N1: (28.604,134.721,16.181)
N3: (28.920,136.898,15.196)
N6: (29.292,134.162,18.315)
N7: (30.282,137.071,18.504)
N9: (30.036,138.431,16.727)
O5': (31.183,141.189,19.136)
O3': (28.461,142.681,16.890)
Image (generated by PyMOL):