Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3K1V:A4:A5
Extra
PDB:
ATOM 1 O3' G A 3 -9.551 -2.102 20.857 1.00 20.17 O
ATOM 2 P G A 4 -9.247 -3.568 20.257 1.00 24.25 P
ATOM 3 OP1 G A 4 -8.203 -4.232 21.073 1.00 27.41 O
ATOM 4 OP2 G A 4 -9.043 -3.411 18.795 1.00 26.39 O
ATOM 5 O5' G A 4 -10.615 -4.353 20.454 1.00 21.48 O
ATOM 6 C5' G A 4 -11.171 -4.546 21.748 1.00 17.73 C
ATOM 7 C4' G A 4 -12.431 -5.369 21.649 1.00 23.62 C
ATOM 8 O4' G A 4 -13.403 -4.658 20.839 1.00 25.69 O
ATOM 9 C3' G A 4 -12.260 -6.719 20.967 1.00 24.85 C
ATOM 10 O3' G A 4 -11.846 -7.677 21.935 1.00 24.99 O
ATOM 11 C2' G A 4 -13.657 -6.986 20.416 1.00 26.16 C
ATOM 12 O2' G A 4 -14.554 -7.507 21.375 1.00 27.82 O
ATOM 13 C1' G A 4 -14.103 -5.576 20.015 1.00 25.58 C
ATOM 14 N9 G A 4 -13.810 -5.241 18.627 1.00 18.67 N
ATOM 15 C8 G A 4 -12.658 -4.664 18.143 1.00 27.67 C
ATOM 16 N7 G A 4 -12.679 -4.479 16.852 1.00 15.34 N
ATOM 17 C5 G A 4 -13.919 -4.962 16.460 1.00 24.64 C
ATOM 18 C6 G A 4 -14.504 -5.041 15.177 1.00 27.35 C
ATOM 19 O6 G A 4 -14.030 -4.683 14.098 1.00 18.21 O
ATOM 20 N1 G A 4 -15.772 -5.617 15.226 1.00 31.42 N
ATOM 21 C2 G A 4 -16.396 -6.057 16.368 1.00 24.66 C
ATOM 22 N2 G A 4 -17.619 -6.583 16.214 1.00 24.15 N
ATOM 23 N3 G A 4 -15.861 -5.985 17.573 1.00 29.19 N
ATOM 24 C4 G A 4 -14.628 -5.435 17.546 1.00 19.81 C
ATOM 25 P U A 5 -11.258 -9.102 21.474 1.00 26.53 P
ATOM 26 OP1 U A 5 -10.085 -9.408 22.326 1.00 19.81 O
ATOM 27 OP2 U A 5 -11.127 -9.142 19.995 1.00 22.10 O
ATOM 28 O5' U A 5 -12.406 -10.114 21.896 1.00 32.05 O
TER
ATOM 1 O3' G B 4 -11.846 -7.677 21.935 1.00 24.99 O
ATOM 2 P U B 5 -11.258 -9.102 21.474 1.00 26.53 P
ATOM 3 OP1 U B 5 -10.085 -9.408 22.326 1.00 19.81 O
ATOM 4 OP2 U B 5 -11.127 -9.142 19.995 1.00 22.10 O
ATOM 5 O5' U B 5 -12.406 -10.114 21.896 1.00 32.05 O
ATOM 6 C5' U B 5 -12.828 -10.191 23.248 1.00 21.50 C
ATOM 7 C4' U B 5 -14.101 -10.987 23.349 1.00 25.30 C
ATOM 8 O4' U B 5 -15.203 -10.257 22.750 1.00 25.16 O
ATOM 9 C3' U B 5 -14.089 -12.305 22.601 1.00 17.02 C
ATOM 10 O3' U B 5 -13.440 -13.298 23.374 1.00 28.43 O
ATOM 11 C2' U B 5 -15.573 -12.586 22.451 1.00 26.56 C
ATOM 12 O2' U B 5 -16.113 -13.081 23.656 1.00 26.10 O
ATOM 13 C1' U B 5 -16.120 -11.179 22.183 1.00 29.41 C
ATOM 14 N1 U B 5 -16.263 -10.870 20.753 1.00 26.94 N
ATOM 15 C2 U B 5 -17.445 -11.228 20.146 1.00 25.36 C
ATOM 16 O2 U B 5 -18.340 -11.800 20.740 1.00 21.71 O
ATOM 17 N3 U B 5 -17.542 -10.891 18.819 1.00 24.05 N
ATOM 18 C4 U B 5 -16.590 -10.250 18.054 1.00 27.96 C
ATOM 19 O4 U B 5 -16.831 -9.997 16.874 1.00 26.00 O
ATOM 20 C5 U B 5 -15.385 -9.924 18.754 1.00 23.93 C
ATOM 21 C6 U B 5 -15.265 -10.238 20.048 1.00 24.95 C
ATOM 22 P U B 6 -12.550 -14.413 22.643 1.00 26.79 P
ATOM 23 OP1 U B 6 -11.745 -15.109 23.679 1.00 31.12 O
ATOM 24 OP2 U B 6 -11.865 -13.756 21.500 1.00 24.64 O
ATOM 25 O5' U B 6 -13.636 -15.434 22.090 1.00 29.92 O
TER
ATOM 2 P G A 4 -9.247 -3.568 20.257 1.00 24.25 P
ATOM 3 OP1 G A 4 -8.203 -4.232 21.073 1.00 27.41 O
ATOM 4 OP2 G A 4 -9.043 -3.411 18.795 1.00 26.39 O
ATOM 5 O5' G A 4 -10.615 -4.353 20.454 1.00 21.48 O
ATOM 6 C5' G A 4 -11.171 -4.546 21.748 1.00 17.73 C
ATOM 7 C4' G A 4 -12.431 -5.369 21.649 1.00 23.62 C
ATOM 8 O4' G A 4 -13.403 -4.658 20.839 1.00 25.69 O
ATOM 9 C3' G A 4 -12.260 -6.719 20.967 1.00 24.85 C
ATOM 10 O3' G A 4 -11.846 -7.677 21.935 1.00 24.99 O
ATOM 11 C2' G A 4 -13.657 -6.986 20.416 1.00 26.16 C
ATOM 12 O2' G A 4 -14.554 -7.507 21.375 1.00 27.82 O
ATOM 13 C1' G A 4 -14.103 -5.576 20.015 1.00 25.58 C
ATOM 14 N9 G A 4 -13.810 -5.241 18.627 1.00 18.67 N
ATOM 15 C8 G A 4 -12.658 -4.664 18.143 1.00 27.67 C
ATOM 16 N7 G A 4 -12.679 -4.479 16.852 1.00 15.34 N
ATOM 17 C5 G A 4 -13.919 -4.962 16.460 1.00 24.64 C
ATOM 18 C6 G A 4 -14.504 -5.041 15.177 1.00 27.35 C
ATOM 19 O6 G A 4 -14.030 -4.683 14.098 1.00 18.21 O
ATOM 20 N1 G A 4 -15.772 -5.617 15.226 1.00 31.42 N
ATOM 21 C2 G A 4 -16.396 -6.057 16.368 1.00 24.66 C
ATOM 22 N2 G A 4 -17.619 -6.583 16.214 1.00 24.15 N
ATOM 23 N3 G A 4 -15.861 -5.985 17.573 1.00 29.19 N
ATOM 24 C4 G A 4 -14.628 -5.435 17.546 1.00 19.81 C
ATOM 25 P U A 5 -11.258 -9.102 21.474 1.00 26.53 P
ATOM 26 OP1 U A 5 -10.085 -9.408 22.326 1.00 19.81 O
ATOM 27 OP2 U A 5 -11.127 -9.142 19.995 1.00 22.10 O
ATOM 28 O5' U A 5 -12.406 -10.114 21.896 1.00 32.05 O
TER
ATOM 1 O3' G B 4 -11.846 -7.677 21.935 1.00 24.99 O
ATOM 2 P U B 5 -11.258 -9.102 21.474 1.00 26.53 P
ATOM 3 OP1 U B 5 -10.085 -9.408 22.326 1.00 19.81 O
ATOM 4 OP2 U B 5 -11.127 -9.142 19.995 1.00 22.10 O
ATOM 5 O5' U B 5 -12.406 -10.114 21.896 1.00 32.05 O
ATOM 6 C5' U B 5 -12.828 -10.191 23.248 1.00 21.50 C
ATOM 7 C4' U B 5 -14.101 -10.987 23.349 1.00 25.30 C
ATOM 8 O4' U B 5 -15.203 -10.257 22.750 1.00 25.16 O
ATOM 9 C3' U B 5 -14.089 -12.305 22.601 1.00 17.02 C
ATOM 10 O3' U B 5 -13.440 -13.298 23.374 1.00 28.43 O
ATOM 11 C2' U B 5 -15.573 -12.586 22.451 1.00 26.56 C
ATOM 12 O2' U B 5 -16.113 -13.081 23.656 1.00 26.10 O
ATOM 13 C1' U B 5 -16.120 -11.179 22.183 1.00 29.41 C
ATOM 14 N1 U B 5 -16.263 -10.870 20.753 1.00 26.94 N
ATOM 15 C2 U B 5 -17.445 -11.228 20.146 1.00 25.36 C
ATOM 16 O2 U B 5 -18.340 -11.800 20.740 1.00 21.71 O
ATOM 17 N3 U B 5 -17.542 -10.891 18.819 1.00 24.05 N
ATOM 18 C4 U B 5 -16.590 -10.250 18.054 1.00 27.96 C
ATOM 19 O4 U B 5 -16.831 -9.997 16.874 1.00 26.00 O
ATOM 20 C5 U B 5 -15.385 -9.924 18.754 1.00 23.93 C
ATOM 21 C6 U B 5 -15.265 -10.238 20.048 1.00 24.95 C
ATOM 22 P U B 6 -12.550 -14.413 22.643 1.00 26.79 P
ATOM 23 OP1 U B 6 -11.745 -15.109 23.679 1.00 31.12 O
ATOM 24 OP2 U B 6 -11.865 -13.756 21.500 1.00 24.64 O
ATOM 25 O5' U B 6 -13.636 -15.434 22.090 1.00 29.92 O
TER
Atoms:
OP1: (-8.203,-4.232,21.073)
OP2: (-9.043,-3.411,18.795)
C3': (-12.260,-6.719,20.967)
C1': (-14.103,-5.576,20.015)
C5': (-11.171,-4.546,21.748)
O6: (-14.030,-4.683,14.098)
O4': (-13.403,-4.658,20.839)
C8: (-12.658,-4.664,18.143)
C2: (-16.396,-6.057,16.368)
C6: (-14.504,-5.041,15.177)
C5: (-13.919,-4.962,16.460)
C4: (-14.628,-5.435,17.546)
P: (-9.247,-3.568,20.257)
C4': (-12.431,-5.369,21.649)
C2': (-13.657,-6.986,20.416)
O2': (-14.554,-7.507,21.375)
N1: (-15.772,-5.617,15.226)
N2: (-17.619,-6.583,16.214)
N3: (-15.861,-5.985,17.573)
N7: (-12.679,-4.479,16.852)
N9: (-13.810,-5.241,18.627)
O5': (-10.615,-4.353,20.454)
O3': (-11.846,-7.677,21.935)
OP2: (-9.043,-3.411,18.795)
C3': (-12.260,-6.719,20.967)
C1': (-14.103,-5.576,20.015)
C5': (-11.171,-4.546,21.748)
O6: (-14.030,-4.683,14.098)
O4': (-13.403,-4.658,20.839)
C8: (-12.658,-4.664,18.143)
C2: (-16.396,-6.057,16.368)
C6: (-14.504,-5.041,15.177)
C5: (-13.919,-4.962,16.460)
C4: (-14.628,-5.435,17.546)
P: (-9.247,-3.568,20.257)
C4': (-12.431,-5.369,21.649)
C2': (-13.657,-6.986,20.416)
O2': (-14.554,-7.507,21.375)
N1: (-15.772,-5.617,15.226)
N2: (-17.619,-6.583,16.214)
N3: (-15.861,-5.985,17.573)
N7: (-12.679,-4.479,16.852)
N9: (-13.810,-5.241,18.627)
O5': (-10.615,-4.353,20.454)
O3': (-11.846,-7.677,21.935)
C4: (-16.590,-10.250,18.054)
N3: (-17.542,-10.891,18.819)
OP1: (-10.085,-9.408,22.326)
OP2: (-11.127,-9.142,19.995)
C2: (-17.445,-11.228,20.146)
C1': (-16.120,-11.179,22.183)
C3': (-14.089,-12.305,22.601)
O5': (-12.406,-10.114,21.896)
O4': (-15.203,-10.257,22.750)
C5': (-12.828,-10.191,23.248)
P: (-11.258,-9.102,21.474)
C4': (-14.101,-10.987,23.349)
C2': (-15.573,-12.586,22.451)
O2': (-16.113,-13.081,23.656)
N1: (-16.263,-10.870,20.753)
O4: (-16.831,-9.997,16.874)
O2: (-18.340,-11.800,20.740)
C6: (-15.265,-10.238,20.048)
C5: (-15.385,-9.924,18.754)
O3': (-13.440,-13.298,23.374)
N3: (-17.542,-10.891,18.819)
OP1: (-10.085,-9.408,22.326)
OP2: (-11.127,-9.142,19.995)
C2: (-17.445,-11.228,20.146)
C1': (-16.120,-11.179,22.183)
C3': (-14.089,-12.305,22.601)
O5': (-12.406,-10.114,21.896)
O4': (-15.203,-10.257,22.750)
C5': (-12.828,-10.191,23.248)
P: (-11.258,-9.102,21.474)
C4': (-14.101,-10.987,23.349)
C2': (-15.573,-12.586,22.451)
O2': (-16.113,-13.081,23.656)
N1: (-16.263,-10.870,20.753)
O4: (-16.831,-9.997,16.874)
O2: (-18.340,-11.800,20.740)
C6: (-15.265,-10.238,20.048)
C5: (-15.385,-9.924,18.754)
O3': (-13.440,-13.298,23.374)
Image (generated by PyMOL):