ClaRNA

Doublet info:

Details

Nucleotide types: AU
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 3IVN:A53:A54

Extra

PDB:
ATOM 1 O3' A A 52 12.331 13.505 21.421 1.00 46.75 O
ATOM 2 P A A 53 11.638 12.331 22.271 1.00 48.92 P
ATOM 3 OP1 A A 53 12.582 11.995 23.368 1.00 46.01 O
ATOM 4 OP2 A A 53 11.222 11.274 21.313 1.00 45.69 O
ATOM 5 O5' A A 53 10.366 13.087 22.855 1.00 46.20 O
ATOM 6 C5' A A 53 10.548 14.242 23.673 1.00 44.08 C
ATOM 7 C4' A A 53 9.220 14.866 24.002 1.00 43.98 C
ATOM 8 O4' A A 53 8.558 15.304 22.788 1.00 43.66 O
ATOM 9 C3' A A 53 8.212 13.952 24.678 1.00 42.48 C
ATOM 10 O3' A A 53 8.461 13.829 26.067 1.00 42.56 O
ATOM 11 C2' A A 53 6.886 14.630 24.334 1.00 41.35 C
ATOM 12 O2' A A 53 6.688 15.763 25.171 1.00 40.84 O
ATOM 13 C1' A A 53 7.161 15.139 22.919 1.00 41.70 C
ATOM 14 N9 A A 53 6.683 14.215 21.870 1.00 41.48 N
ATOM 15 C8 A A 53 7.421 13.361 21.086 1.00 42.31 C
ATOM 16 N7 A A 53 6.699 12.673 20.233 1.00 41.39 N
ATOM 17 C5 A A 53 5.400 13.107 20.471 1.00 40.60 C
ATOM 18 C6 A A 53 4.163 12.762 19.897 1.00 39.87 C
ATOM 19 N6 A A 53 4.027 11.862 18.921 1.00 39.74 N
ATOM 20 N1 A A 53 3.054 13.380 20.363 1.00 38.22 N
ATOM 21 C2 A A 53 3.191 14.284 21.342 1.00 37.85 C
ATOM 22 N3 A A 53 4.297 14.693 21.962 1.00 38.77 N
ATOM 23 C4 A A 53 5.378 14.059 21.474 1.00 40.32 C
ATOM 24 P U A 54 8.122 12.478 26.873 1.00 43.25 P
ATOM 25 OP1 U A 54 9.403 11.997 27.452 1.00 42.50 O
ATOM 26 OP2 U A 54 7.354 11.598 25.955 1.00 40.57 O
ATOM 27 O5' U A 54 7.168 13.059 28.009 1.00 40.81 O
TER

ATOM 1 O3' A B 53 8.461 13.829 26.067 1.00 42.56 O
ATOM 2 P U B 54 8.122 12.478 26.873 1.00 43.25 P
ATOM 3 OP1 U B 54 9.403 11.997 27.452 1.00 42.50 O
ATOM 4 OP2 U B 54 7.354 11.598 25.955 1.00 40.57 O
ATOM 5 O5' U B 54 7.168 13.059 28.009 1.00 40.81 O
ATOM 6 C5' U B 54 6.305 14.110 27.592 1.00 38.82 C
ATOM 7 C4' U B 54 5.299 14.614 28.586 1.00 36.95 C
ATOM 8 O4' U B 54 4.443 15.473 27.797 1.00 35.64 O
ATOM 9 C3' U B 54 4.346 13.590 29.189 1.00 33.90 C
ATOM 10 O3' U B 54 4.845 12.947 30.351 1.00 33.72 O
ATOM 11 C2' U B 54 3.081 14.416 29.403 1.00 33.11 C
ATOM 12 O2' U B 54 3.246 15.256 30.539 1.00 31.93 O
ATOM 13 C1' U B 54 3.098 15.309 28.169 1.00 33.17 C
ATOM 14 N1 U B 54 2.472 14.619 27.021 1.00 31.65 N
ATOM 15 C2 U B 54 1.112 14.751 26.833 1.00 30.33 C
ATOM 16 O2 U B 54 0.401 15.410 27.574 1.00 31.00 O
ATOM 17 N3 U B 54 0.616 14.078 25.745 1.00 29.36 N
ATOM 18 C4 U B 54 1.325 13.307 24.846 1.00 30.61 C
ATOM 19 O4 U B 54 0.734 12.763 23.913 1.00 30.44 O
ATOM 20 C5 U B 54 2.728 13.221 25.106 1.00 32.02 C
ATOM 21 C6 U B 54 3.235 13.865 26.158 1.00 32.57 C
ATOM 22 P C B 55 4.140 11.631 30.968 1.00 37.48 P
ATOM 23 OP1 C B 55 4.821 11.417 32.270 1.00 35.95 O
ATOM 24 OP2 C B 55 4.209 10.571 29.930 1.00 33.98 O
ATOM 25 O5' C B 55 2.617 12.044 31.214 1.00 33.04 O
TER

Atoms:
OP1: (12.582,11.995,23.368)
OP2: (11.222,11.274,21.313)
C3': (8.212,13.952,24.678)
C1': (7.161,15.139,22.919)
C5': (10.548,14.242,23.673)
O4': (8.558,15.304,22.788)
C8: (7.421,13.361,21.086)
O2': (6.688,15.763,25.171)
C6: (4.163,12.762,19.897)
C5: (5.400,13.107,20.471)
C4: (5.378,14.059,21.474)
P: (11.638,12.331,22.271)
C4': (9.220,14.866,24.002)
C2': (6.886,14.630,24.334)
C2: (3.191,14.284,21.342)
N1: (3.054,13.380,20.363)
N3: (4.297,14.693,21.962)
N6: (4.027,11.862,18.921)
N7: (6.699,12.673,20.233)
N9: (6.683,14.215,21.870)
O5': (10.366,13.087,22.855)
O3': (8.461,13.829,26.067)
C4: (1.325,13.307,24.846)
N3: (0.616,14.078,25.745)
OP1: (9.403,11.997,27.452)
OP2: (7.354,11.598,25.955)
C2: (1.112,14.751,26.833)
C1': (3.098,15.309,28.169)
C3': (4.346,13.590,29.189)
O5': (7.168,13.059,28.009)
O4': (4.443,15.473,27.797)
C5': (6.305,14.110,27.592)
P: (8.122,12.478,26.873)
C4': (5.299,14.614,28.586)
C2': (3.081,14.416,29.403)
O2': (3.246,15.256,30.539)
N1: (2.472,14.619,27.021)
O4: (0.734,12.763,23.913)
O2: (0.401,15.410,27.574)
C6: (3.235,13.865,26.158)
C5: (2.728,13.221,25.106)
O3': (4.845,12.947,30.351)
Image (generated by PyMOL):
PyMOL image
show in jmol