Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:01898:01900
Extra
PDB:
ATOM 1 O3' U A1897 120.340 112.105 81.022 1.00 41.73 O
ATOM 2 P C A1898 119.988 112.097 82.582 1.00 42.87 P
ATOM 3 OP1 C A1898 120.481 113.367 83.179 1.00 44.35 O
ATOM 4 OP2 C A1898 120.421 110.797 83.154 1.00 42.65 O
ATOM 5 O5' C A1898 118.399 112.135 82.611 1.00 44.86 O
ATOM 6 C5' C A1898 117.668 113.275 82.118 1.00 44.41 C
ATOM 7 C4' C A1898 116.513 113.572 83.040 1.00 44.66 C
ATOM 8 O4' C A1898 115.706 112.376 83.167 1.00 45.84 O
ATOM 9 C3' C A1898 116.917 113.934 84.461 1.00 44.07 C
ATOM 10 O3' C A1898 117.102 115.345 84.527 1.00 45.12 O
ATOM 11 C2' C A1898 115.720 113.472 85.284 1.00 43.24 C
ATOM 12 O2' C A1898 114.673 114.408 85.267 1.00 42.44 O
ATOM 13 C1' C A1898 115.258 112.240 84.500 1.00 45.04 C
ATOM 14 N1 C A1898 115.686 110.917 84.984 1.00 46.13 N
ATOM 15 C2 C A1898 114.750 109.883 84.993 1.00 48.48 C
ATOM 16 O2 C A1898 113.584 110.124 84.643 1.00 50.08 O
ATOM 17 N3 C A1898 115.132 108.646 85.387 1.00 49.06 N
ATOM 18 C4 C A1898 116.389 108.428 85.772 1.00 47.66 C
ATOM 19 N4 C A1898 116.718 107.194 86.141 1.00 48.84 N
ATOM 20 C5 C A1898 117.360 109.468 85.793 1.00 47.67 C
ATOM 21 C6 C A1898 116.970 110.687 85.396 1.00 47.75 C
ATOM 22 P A A1899 117.911 116.004 85.747 1.00 46.10 P
ATOM 23 OP1 A A1899 119.311 116.196 85.281 1.00 49.07 O
ATOM 24 OP2 A A1899 117.649 115.251 87.001 1.00 45.69 O
ATOM 25 O5' A A1899 117.240 117.438 85.895 1.00 44.94 O
TER
ATOM 1 O3' A B1899 114.435 118.845 83.032 1.00 46.41 O
ATOM 2 P A B1900 114.369 118.407 81.492 1.00 44.90 P
ATOM 3 OP1 A B1900 115.712 118.254 80.894 1.00 45.61 O
ATOM 4 OP2 A B1900 113.396 119.335 80.865 1.00 46.01 O
ATOM 5 O5' A B1900 113.687 116.971 81.480 1.00 48.28 O
ATOM 6 C5' A B1900 113.051 116.575 80.267 1.00 51.63 C
ATOM 7 C4' A B1900 112.159 115.372 80.423 1.00 48.74 C
ATOM 8 O4' A B1900 112.803 114.155 80.035 1.00 48.55 O
ATOM 9 C3' A B1900 111.369 114.937 81.641 1.00 46.46 C
ATOM 10 O3' A B1900 110.338 115.859 81.997 1.00 46.06 O
ATOM 11 C2' A B1900 110.709 113.696 81.034 1.00 48.39 C
ATOM 12 O2' A B1900 109.681 114.087 80.139 1.00 45.19 O
ATOM 13 C1' A B1900 111.833 113.144 80.140 1.00 49.34 C
ATOM 14 N9 A B1900 112.466 111.890 80.540 1.00 50.01 N
ATOM 15 C8 A B1900 113.723 111.657 81.036 1.00 49.73 C
ATOM 16 N7 A B1900 113.986 110.389 81.228 1.00 51.13 N
ATOM 17 C5 A B1900 112.818 109.745 80.845 1.00 51.10 C
ATOM 18 C6 A B1900 112.453 108.392 80.799 1.00 51.47 C
ATOM 19 N6 A B1900 113.257 107.392 81.158 1.00 51.35 N
ATOM 20 N1 A B1900 111.211 108.094 80.364 1.00 52.71 N
ATOM 21 C2 A B1900 110.398 109.092 80.007 1.00 52.01 C
ATOM 22 N3 A B1900 110.624 110.397 80.006 1.00 50.85 N
ATOM 23 C4 A B1900 111.869 110.660 80.437 1.00 51.00 C
ATOM 24 P C B1901 109.433 115.605 83.318 1.00 43.49 P
ATOM 25 OP1 C B1901 108.553 116.792 83.462 1.00 42.51 O
ATOM 26 OP2 C B1901 110.288 115.193 84.454 1.00 43.63 O
ATOM 27 O5' C B1901 108.519 114.357 82.945 1.00 43.71 O
TER
ATOM 2 P C A1898 119.988 112.097 82.582 1.00 42.87 P
ATOM 3 OP1 C A1898 120.481 113.367 83.179 1.00 44.35 O
ATOM 4 OP2 C A1898 120.421 110.797 83.154 1.00 42.65 O
ATOM 5 O5' C A1898 118.399 112.135 82.611 1.00 44.86 O
ATOM 6 C5' C A1898 117.668 113.275 82.118 1.00 44.41 C
ATOM 7 C4' C A1898 116.513 113.572 83.040 1.00 44.66 C
ATOM 8 O4' C A1898 115.706 112.376 83.167 1.00 45.84 O
ATOM 9 C3' C A1898 116.917 113.934 84.461 1.00 44.07 C
ATOM 10 O3' C A1898 117.102 115.345 84.527 1.00 45.12 O
ATOM 11 C2' C A1898 115.720 113.472 85.284 1.00 43.24 C
ATOM 12 O2' C A1898 114.673 114.408 85.267 1.00 42.44 O
ATOM 13 C1' C A1898 115.258 112.240 84.500 1.00 45.04 C
ATOM 14 N1 C A1898 115.686 110.917 84.984 1.00 46.13 N
ATOM 15 C2 C A1898 114.750 109.883 84.993 1.00 48.48 C
ATOM 16 O2 C A1898 113.584 110.124 84.643 1.00 50.08 O
ATOM 17 N3 C A1898 115.132 108.646 85.387 1.00 49.06 N
ATOM 18 C4 C A1898 116.389 108.428 85.772 1.00 47.66 C
ATOM 19 N4 C A1898 116.718 107.194 86.141 1.00 48.84 N
ATOM 20 C5 C A1898 117.360 109.468 85.793 1.00 47.67 C
ATOM 21 C6 C A1898 116.970 110.687 85.396 1.00 47.75 C
ATOM 22 P A A1899 117.911 116.004 85.747 1.00 46.10 P
ATOM 23 OP1 A A1899 119.311 116.196 85.281 1.00 49.07 O
ATOM 24 OP2 A A1899 117.649 115.251 87.001 1.00 45.69 O
ATOM 25 O5' A A1899 117.240 117.438 85.895 1.00 44.94 O
TER
ATOM 1 O3' A B1899 114.435 118.845 83.032 1.00 46.41 O
ATOM 2 P A B1900 114.369 118.407 81.492 1.00 44.90 P
ATOM 3 OP1 A B1900 115.712 118.254 80.894 1.00 45.61 O
ATOM 4 OP2 A B1900 113.396 119.335 80.865 1.00 46.01 O
ATOM 5 O5' A B1900 113.687 116.971 81.480 1.00 48.28 O
ATOM 6 C5' A B1900 113.051 116.575 80.267 1.00 51.63 C
ATOM 7 C4' A B1900 112.159 115.372 80.423 1.00 48.74 C
ATOM 8 O4' A B1900 112.803 114.155 80.035 1.00 48.55 O
ATOM 9 C3' A B1900 111.369 114.937 81.641 1.00 46.46 C
ATOM 10 O3' A B1900 110.338 115.859 81.997 1.00 46.06 O
ATOM 11 C2' A B1900 110.709 113.696 81.034 1.00 48.39 C
ATOM 12 O2' A B1900 109.681 114.087 80.139 1.00 45.19 O
ATOM 13 C1' A B1900 111.833 113.144 80.140 1.00 49.34 C
ATOM 14 N9 A B1900 112.466 111.890 80.540 1.00 50.01 N
ATOM 15 C8 A B1900 113.723 111.657 81.036 1.00 49.73 C
ATOM 16 N7 A B1900 113.986 110.389 81.228 1.00 51.13 N
ATOM 17 C5 A B1900 112.818 109.745 80.845 1.00 51.10 C
ATOM 18 C6 A B1900 112.453 108.392 80.799 1.00 51.47 C
ATOM 19 N6 A B1900 113.257 107.392 81.158 1.00 51.35 N
ATOM 20 N1 A B1900 111.211 108.094 80.364 1.00 52.71 N
ATOM 21 C2 A B1900 110.398 109.092 80.007 1.00 52.01 C
ATOM 22 N3 A B1900 110.624 110.397 80.006 1.00 50.85 N
ATOM 23 C4 A B1900 111.869 110.660 80.437 1.00 51.00 C
ATOM 24 P C B1901 109.433 115.605 83.318 1.00 43.49 P
ATOM 25 OP1 C B1901 108.553 116.792 83.462 1.00 42.51 O
ATOM 26 OP2 C B1901 110.288 115.193 84.454 1.00 43.63 O
ATOM 27 O5' C B1901 108.519 114.357 82.945 1.00 43.71 O
TER
Atoms:
C2: (114.750,109.883,84.993)
OP1: (120.481,113.367,83.179)
OP2: (120.421,110.797,83.154)
C4: (116.389,108.428,85.772)
O5': (118.399,112.135,82.611)
C3': (116.917,113.934,84.461)
C1': (115.258,112.240,84.500)
O4': (115.706,112.376,83.167)
C5': (117.668,113.275,82.118)
P: (119.988,112.097,82.582)
O2: (113.584,110.124,84.643)
C4': (116.513,113.572,83.040)
C2': (115.720,113.472,85.284)
O2': (114.673,114.408,85.267)
N1: (115.686,110.917,84.984)
N3: (115.132,108.646,85.387)
N4: (116.718,107.194,86.141)
C6: (116.970,110.687,85.396)
C5: (117.360,109.468,85.793)
O3': (117.102,115.345,84.527)
OP1: (120.481,113.367,83.179)
OP2: (120.421,110.797,83.154)
C4: (116.389,108.428,85.772)
O5': (118.399,112.135,82.611)
C3': (116.917,113.934,84.461)
C1': (115.258,112.240,84.500)
O4': (115.706,112.376,83.167)
C5': (117.668,113.275,82.118)
P: (119.988,112.097,82.582)
O2: (113.584,110.124,84.643)
C4': (116.513,113.572,83.040)
C2': (115.720,113.472,85.284)
O2': (114.673,114.408,85.267)
N1: (115.686,110.917,84.984)
N3: (115.132,108.646,85.387)
N4: (116.718,107.194,86.141)
C6: (116.970,110.687,85.396)
C5: (117.360,109.468,85.793)
O3': (117.102,115.345,84.527)
OP1: (115.712,118.254,80.894)
OP2: (113.396,119.335,80.865)
C3': (111.369,114.937,81.641)
C1': (111.833,113.144,80.140)
C5': (113.051,116.575,80.267)
O4': (112.803,114.155,80.035)
C8: (113.723,111.657,81.036)
O2': (109.681,114.087,80.139)
C6: (112.453,108.392,80.799)
C5: (112.818,109.745,80.845)
C4: (111.869,110.660,80.437)
P: (114.369,118.407,81.492)
C4': (112.159,115.372,80.423)
C2': (110.709,113.696,81.034)
C2: (110.398,109.092,80.007)
N1: (111.211,108.094,80.364)
N3: (110.624,110.397,80.006)
N6: (113.257,107.392,81.158)
N7: (113.986,110.389,81.228)
N9: (112.466,111.890,80.540)
O5': (113.687,116.971,81.480)
O3': (110.338,115.859,81.997)
OP2: (113.396,119.335,80.865)
C3': (111.369,114.937,81.641)
C1': (111.833,113.144,80.140)
C5': (113.051,116.575,80.267)
O4': (112.803,114.155,80.035)
C8: (113.723,111.657,81.036)
O2': (109.681,114.087,80.139)
C6: (112.453,108.392,80.799)
C5: (112.818,109.745,80.845)
C4: (111.869,110.660,80.437)
P: (114.369,118.407,81.492)
C4': (112.159,115.372,80.423)
C2': (110.709,113.696,81.034)
C2: (110.398,109.092,80.007)
N1: (111.211,108.094,80.364)
N3: (110.624,110.397,80.006)
N6: (113.257,107.392,81.158)
N7: (113.986,110.389,81.228)
N9: (112.466,111.890,80.540)
O5': (113.687,116.971,81.480)
O3': (110.338,115.859,81.997)
Image (generated by PyMOL):