Doublet info:
Details
Nucleotide types:
GG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1DK1:B17:B53
Extra
PDB:
ATOM 1 O3' A A 16 -12.649 52.330 18.779 1.00 70.02 O
ATOM 2 P G A 17 -11.282 52.822 19.453 1.00 60.49 P
ATOM 3 OP1 G A 17 -11.622 53.870 20.444 1.00 72.42 O
ATOM 4 OP2 G A 17 -10.327 53.124 18.350 1.00 50.66 O
ATOM 5 O5' G A 17 -10.783 51.553 20.261 1.00 39.95 O
ATOM 6 C5' G A 17 -11.427 51.191 21.470 1.00 43.44 C
ATOM 7 C4' G A 17 -10.928 49.857 21.925 1.00 48.89 C
ATOM 8 O4' G A 17 -11.299 48.852 20.949 1.00 56.17 O
ATOM 9 C3' G A 17 -9.420 49.757 21.991 1.00 52.41 C
ATOM 10 O3' G A 17 -8.973 50.299 23.225 1.00 57.22 O
ATOM 11 C2' G A 17 -9.205 48.250 21.905 1.00 52.69 C
ATOM 12 O2' G A 17 -9.411 47.630 23.161 1.00 38.45 O
ATOM 13 C1' G A 17 -10.307 47.841 20.915 1.00 41.06 C
ATOM 14 N9 G A 17 -9.848 47.719 19.538 1.00 29.02 N
ATOM 15 C8 G A 17 -10.108 48.583 18.508 1.00 19.09 C
ATOM 16 N7 G A 17 -9.507 48.250 17.394 1.00 26.10 N
ATOM 17 C5 G A 17 -8.823 47.082 17.715 1.00 19.76 C
ATOM 18 C6 G A 17 -7.970 46.278 16.927 1.00 35.63 C
ATOM 19 O6 G A 17 -7.616 46.442 15.746 1.00 47.62 O
ATOM 20 N1 G A 17 -7.490 45.193 17.646 1.00 30.96 N
ATOM 21 C2 G A 17 -7.778 44.925 18.953 1.00 36.56 C
ATOM 22 N2 G A 17 -7.203 43.823 19.462 1.00 31.16 N
ATOM 23 N3 G A 17 -8.563 45.677 19.705 1.00 23.94 N
ATOM 24 C4 G A 17 -9.044 46.731 19.026 1.00 23.95 C
ATOM 25 P A A 18 -7.448 50.765 23.400 1.00 49.69 P
ATOM 26 OP1 A A 18 -7.257 50.918 24.864 1.00 51.71 O
ATOM 27 OP2 A A 18 -7.169 51.900 22.505 1.00 32.80 O
ATOM 28 O5' A A 18 -6.593 49.518 22.888 1.00 54.66 O
TER
ATOM 1 O3' C B 52 -2.366 39.954 20.452 1.00 39.73 O
ATOM 2 P G B 53 -1.987 40.811 21.754 1.00 56.48 P
ATOM 3 OP1 G B 53 -1.168 41.969 21.302 1.00 64.10 O
ATOM 4 OP2 G B 53 -1.450 39.868 22.772 1.00 46.43 O
ATOM 5 O5' G B 53 -3.371 41.344 22.331 1.00 57.20 O
ATOM 6 C5' G B 53 -3.743 42.722 22.195 1.00 54.96 C
ATOM 7 C4' G B 53 -5.023 42.994 22.948 1.00 59.21 C
ATOM 8 O4' G B 53 -6.074 42.129 22.444 1.00 58.45 O
ATOM 9 C3' G B 53 -4.974 42.715 24.437 1.00 58.45 C
ATOM 10 O3' G B 53 -4.435 43.864 25.091 1.00 58.79 O
ATOM 11 C2' G B 53 -6.447 42.476 24.763 1.00 53.28 C
ATOM 12 O2' G B 53 -7.176 43.685 24.865 1.00 53.34 O
ATOM 13 C1' G B 53 -6.921 41.742 23.504 1.00 49.46 C
ATOM 14 N9 G B 53 -6.867 40.290 23.598 1.00 48.95 N
ATOM 15 C8 G B 53 -6.047 39.444 22.888 1.00 46.83 C
ATOM 16 N7 G B 53 -6.206 38.187 23.212 1.00 51.48 N
ATOM 17 C5 G B 53 -7.203 38.206 24.181 1.00 49.57 C
ATOM 18 C6 G B 53 -7.806 37.144 24.905 1.00 52.93 C
ATOM 19 O6 G B 53 -7.586 35.925 24.822 1.00 67.30 O
ATOM 20 N1 G B 53 -8.749 37.614 25.803 1.00 45.21 N
ATOM 21 C2 G B 53 -9.075 38.937 25.983 1.00 48.38 C
ATOM 22 N2 G B 53 -9.964 39.198 26.944 1.00 43.63 N
ATOM 23 N3 G B 53 -8.554 39.929 25.290 1.00 38.71 N
ATOM 24 C4 G B 53 -7.624 39.498 24.423 1.00 45.83 C
ATOM 25 P C B 54 -3.663 43.717 26.497 1.00 48.91 P
ATOM 26 OP1 C B 54 -3.070 45.053 26.740 1.00 50.88 O
ATOM 27 OP2 C B 54 -2.797 42.509 26.504 1.00 42.43 O
ATOM 28 O5' C B 54 -4.805 43.433 27.572 1.00 42.07 O
TER
ATOM 2 P G A 17 -11.282 52.822 19.453 1.00 60.49 P
ATOM 3 OP1 G A 17 -11.622 53.870 20.444 1.00 72.42 O
ATOM 4 OP2 G A 17 -10.327 53.124 18.350 1.00 50.66 O
ATOM 5 O5' G A 17 -10.783 51.553 20.261 1.00 39.95 O
ATOM 6 C5' G A 17 -11.427 51.191 21.470 1.00 43.44 C
ATOM 7 C4' G A 17 -10.928 49.857 21.925 1.00 48.89 C
ATOM 8 O4' G A 17 -11.299 48.852 20.949 1.00 56.17 O
ATOM 9 C3' G A 17 -9.420 49.757 21.991 1.00 52.41 C
ATOM 10 O3' G A 17 -8.973 50.299 23.225 1.00 57.22 O
ATOM 11 C2' G A 17 -9.205 48.250 21.905 1.00 52.69 C
ATOM 12 O2' G A 17 -9.411 47.630 23.161 1.00 38.45 O
ATOM 13 C1' G A 17 -10.307 47.841 20.915 1.00 41.06 C
ATOM 14 N9 G A 17 -9.848 47.719 19.538 1.00 29.02 N
ATOM 15 C8 G A 17 -10.108 48.583 18.508 1.00 19.09 C
ATOM 16 N7 G A 17 -9.507 48.250 17.394 1.00 26.10 N
ATOM 17 C5 G A 17 -8.823 47.082 17.715 1.00 19.76 C
ATOM 18 C6 G A 17 -7.970 46.278 16.927 1.00 35.63 C
ATOM 19 O6 G A 17 -7.616 46.442 15.746 1.00 47.62 O
ATOM 20 N1 G A 17 -7.490 45.193 17.646 1.00 30.96 N
ATOM 21 C2 G A 17 -7.778 44.925 18.953 1.00 36.56 C
ATOM 22 N2 G A 17 -7.203 43.823 19.462 1.00 31.16 N
ATOM 23 N3 G A 17 -8.563 45.677 19.705 1.00 23.94 N
ATOM 24 C4 G A 17 -9.044 46.731 19.026 1.00 23.95 C
ATOM 25 P A A 18 -7.448 50.765 23.400 1.00 49.69 P
ATOM 26 OP1 A A 18 -7.257 50.918 24.864 1.00 51.71 O
ATOM 27 OP2 A A 18 -7.169 51.900 22.505 1.00 32.80 O
ATOM 28 O5' A A 18 -6.593 49.518 22.888 1.00 54.66 O
TER
ATOM 1 O3' C B 52 -2.366 39.954 20.452 1.00 39.73 O
ATOM 2 P G B 53 -1.987 40.811 21.754 1.00 56.48 P
ATOM 3 OP1 G B 53 -1.168 41.969 21.302 1.00 64.10 O
ATOM 4 OP2 G B 53 -1.450 39.868 22.772 1.00 46.43 O
ATOM 5 O5' G B 53 -3.371 41.344 22.331 1.00 57.20 O
ATOM 6 C5' G B 53 -3.743 42.722 22.195 1.00 54.96 C
ATOM 7 C4' G B 53 -5.023 42.994 22.948 1.00 59.21 C
ATOM 8 O4' G B 53 -6.074 42.129 22.444 1.00 58.45 O
ATOM 9 C3' G B 53 -4.974 42.715 24.437 1.00 58.45 C
ATOM 10 O3' G B 53 -4.435 43.864 25.091 1.00 58.79 O
ATOM 11 C2' G B 53 -6.447 42.476 24.763 1.00 53.28 C
ATOM 12 O2' G B 53 -7.176 43.685 24.865 1.00 53.34 O
ATOM 13 C1' G B 53 -6.921 41.742 23.504 1.00 49.46 C
ATOM 14 N9 G B 53 -6.867 40.290 23.598 1.00 48.95 N
ATOM 15 C8 G B 53 -6.047 39.444 22.888 1.00 46.83 C
ATOM 16 N7 G B 53 -6.206 38.187 23.212 1.00 51.48 N
ATOM 17 C5 G B 53 -7.203 38.206 24.181 1.00 49.57 C
ATOM 18 C6 G B 53 -7.806 37.144 24.905 1.00 52.93 C
ATOM 19 O6 G B 53 -7.586 35.925 24.822 1.00 67.30 O
ATOM 20 N1 G B 53 -8.749 37.614 25.803 1.00 45.21 N
ATOM 21 C2 G B 53 -9.075 38.937 25.983 1.00 48.38 C
ATOM 22 N2 G B 53 -9.964 39.198 26.944 1.00 43.63 N
ATOM 23 N3 G B 53 -8.554 39.929 25.290 1.00 38.71 N
ATOM 24 C4 G B 53 -7.624 39.498 24.423 1.00 45.83 C
ATOM 25 P C B 54 -3.663 43.717 26.497 1.00 48.91 P
ATOM 26 OP1 C B 54 -3.070 45.053 26.740 1.00 50.88 O
ATOM 27 OP2 C B 54 -2.797 42.509 26.504 1.00 42.43 O
ATOM 28 O5' C B 54 -4.805 43.433 27.572 1.00 42.07 O
TER
Atoms:
OP1: (-11.622,53.870,20.444)
OP2: (-10.327,53.124,18.350)
C3': (-9.420,49.757,21.991)
C1': (-10.307,47.841,20.915)
C5': (-11.427,51.191,21.470)
O6: (-7.616,46.442,15.746)
O4': (-11.299,48.852,20.949)
C8: (-10.108,48.583,18.508)
C2: (-7.778,44.925,18.953)
C6: (-7.970,46.278,16.927)
C5: (-8.823,47.082,17.715)
C4: (-9.044,46.731,19.026)
P: (-11.282,52.822,19.453)
C4': (-10.928,49.857,21.925)
C2': (-9.205,48.250,21.905)
O2': (-9.411,47.630,23.161)
N1: (-7.490,45.193,17.646)
N2: (-7.203,43.823,19.462)
N3: (-8.563,45.677,19.705)
N7: (-9.507,48.250,17.394)
N9: (-9.848,47.719,19.538)
O5': (-10.783,51.553,20.261)
O3': (-8.973,50.299,23.225)
OP2: (-10.327,53.124,18.350)
C3': (-9.420,49.757,21.991)
C1': (-10.307,47.841,20.915)
C5': (-11.427,51.191,21.470)
O6: (-7.616,46.442,15.746)
O4': (-11.299,48.852,20.949)
C8: (-10.108,48.583,18.508)
C2: (-7.778,44.925,18.953)
C6: (-7.970,46.278,16.927)
C5: (-8.823,47.082,17.715)
C4: (-9.044,46.731,19.026)
P: (-11.282,52.822,19.453)
C4': (-10.928,49.857,21.925)
C2': (-9.205,48.250,21.905)
O2': (-9.411,47.630,23.161)
N1: (-7.490,45.193,17.646)
N2: (-7.203,43.823,19.462)
N3: (-8.563,45.677,19.705)
N7: (-9.507,48.250,17.394)
N9: (-9.848,47.719,19.538)
O5': (-10.783,51.553,20.261)
O3': (-8.973,50.299,23.225)
OP1: (-1.168,41.969,21.302)
OP2: (-1.450,39.868,22.772)
C3': (-4.974,42.715,24.437)
C1': (-6.921,41.742,23.504)
C5': (-3.743,42.722,22.195)
O6: (-7.586,35.925,24.822)
O4': (-6.074,42.129,22.444)
C8: (-6.047,39.444,22.888)
C2: (-9.075,38.937,25.983)
C6: (-7.806,37.144,24.905)
C5: (-7.203,38.206,24.181)
C4: (-7.624,39.498,24.423)
P: (-1.987,40.811,21.754)
C4': (-5.023,42.994,22.948)
C2': (-6.447,42.476,24.763)
O2': (-7.176,43.685,24.865)
N1: (-8.749,37.614,25.803)
N2: (-9.964,39.198,26.944)
N3: (-8.554,39.929,25.290)
N7: (-6.206,38.187,23.212)
N9: (-6.867,40.290,23.598)
O5': (-3.371,41.344,22.331)
O3': (-4.435,43.864,25.091)
OP2: (-1.450,39.868,22.772)
C3': (-4.974,42.715,24.437)
C1': (-6.921,41.742,23.504)
C5': (-3.743,42.722,22.195)
O6: (-7.586,35.925,24.822)
O4': (-6.074,42.129,22.444)
C8: (-6.047,39.444,22.888)
C2: (-9.075,38.937,25.983)
C6: (-7.806,37.144,24.905)
C5: (-7.203,38.206,24.181)
C4: (-7.624,39.498,24.423)
P: (-1.987,40.811,21.754)
C4': (-5.023,42.994,22.948)
C2': (-6.447,42.476,24.763)
O2': (-7.176,43.685,24.865)
N1: (-8.749,37.614,25.803)
N2: (-9.964,39.198,26.944)
N3: (-8.554,39.929,25.290)
N7: (-6.206,38.187,23.212)
N9: (-6.867,40.290,23.598)
O5': (-3.371,41.344,22.331)
O3': (-4.435,43.864,25.091)
Image (generated by PyMOL):