Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3R8S:A1905:A1910
Extra
PDB:
ATOM 1 O3' U A1904 -105.202 -0.108 -8.848 1.00 41.32 O
ATOM 2 P A A1905 -104.946 -0.526 -10.364 1.00 28.49 P
ATOM 3 OP1 A A1905 -105.973 0.165 -11.203 1.00 28.49 O
ATOM 4 OP2 A A1905 -104.874 -2.011 -10.392 1.00 28.49 O
ATOM 5 O5' A A1905 -103.508 0.089 -10.651 1.00 28.49 O
ATOM 6 C5' A A1905 -103.253 1.459 -10.428 1.00 28.49 C
ATOM 7 C4' A A1905 -102.201 1.975 -11.359 1.00 28.49 C
ATOM 8 O4' A A1905 -100.904 1.750 -10.791 1.00 28.49 O
ATOM 9 C3' A A1905 -102.121 1.313 -12.720 1.00 28.49 C
ATOM 10 O3' A A1905 -103.097 1.813 -13.629 1.00 28.49 O
ATOM 11 C2' A A1905 -100.675 1.588 -13.151 1.00 28.49 C
ATOM 12 O2' A A1905 -100.578 2.803 -13.874 1.00 28.49 O
ATOM 13 C1' A A1905 -99.950 1.760 -11.812 1.00 28.49 C
ATOM 14 N9 A A1905 -98.962 0.708 -11.550 1.00 27.91 N
ATOM 15 C8 A A1905 -98.969 -0.642 -11.765 1.00 27.91 C
ATOM 16 N7 A A1905 -97.855 -1.213 -11.374 1.00 27.91 N
ATOM 17 C5 A A1905 -97.081 -0.176 -10.869 1.00 27.91 C
ATOM 18 C6 A A1905 -95.802 -0.104 -10.297 1.00 27.91 C
ATOM 19 N6 A A1905 -94.984 -1.143 -10.104 1.00 27.91 N
ATOM 20 N1 A A1905 -95.362 1.109 -9.925 1.00 27.91 N
ATOM 21 C2 A A1905 -96.144 2.168 -10.106 1.00 27.91 C
ATOM 22 N3 A A1905 -97.354 2.223 -10.628 1.00 27.91 N
ATOM 23 C4 A A1905 -97.760 1.006 -10.986 1.00 27.91 C
ATOM 24 P A A1906 -103.317 1.105 -15.057 1.00 66.34 P
ATOM 25 OP1 A A1906 -104.778 0.948 -15.242 1.00 66.34 O
ATOM 26 OP2 A A1906 -102.463 -0.102 -15.082 1.00 66.34 O
ATOM 27 O5' A A1906 -102.752 2.179 -16.079 1.00 66.34 O
TER
ATOM 1 O3' A B1909 -98.121 -11.031 -12.884 1.00 36.99 O
ATOM 2 P U B1910 -98.719 -10.782 -11.417 1.00 30.02 P
ATOM 3 OP1 U B1910 -98.859 -12.125 -10.763 1.00 30.02 O
ATOM 4 OP2 U B1910 -99.937 -9.918 -11.580 1.00 30.02 O
ATOM 5 O5' U B1910 -97.558 -9.957 -10.706 1.00 30.02 O
ATOM 6 C5' U B1910 -96.215 -10.394 -10.778 1.00 30.02 C
ATOM 7 C4' U B1910 -95.278 -9.239 -10.936 1.00 30.02 C
ATOM 8 O4' U B1910 -95.691 -8.425 -12.060 1.00 30.02 O
ATOM 9 C3' U B1910 -95.233 -8.266 -9.783 1.00 30.02 C
ATOM 10 O3' U B1910 -94.438 -8.723 -8.718 1.00 30.02 O
ATOM 11 C2' U B1910 -94.687 -7.026 -10.442 1.00 30.02 C
ATOM 12 O2' U B1910 -93.298 -7.156 -10.649 1.00 30.02 O
ATOM 13 C1' U B1910 -95.382 -7.076 -11.800 1.00 30.02 C
ATOM 14 N1 U B1910 -96.642 -6.277 -11.816 1.00 30.05 N
ATOM 15 C2 U B1910 -96.542 -4.920 -11.520 1.00 30.05 C
ATOM 16 O2 U B1910 -95.484 -4.363 -11.260 1.00 30.05 O
ATOM 17 N3 U B1910 -97.723 -4.228 -11.530 1.00 30.05 N
ATOM 18 C4 U B1910 -98.963 -4.721 -11.815 1.00 30.05 C
ATOM 19 O4 U B1910 -99.905 -3.945 -11.790 1.00 30.05 O
ATOM 20 C5 U B1910 -99.017 -6.114 -12.114 1.00 30.05 C
ATOM 21 C6 U B1910 -97.881 -6.825 -12.105 1.00 30.05 C
ATOM 22 P A B1911 -94.870 -8.410 -7.211 1.00 31.13 P
ATOM 23 OP1 A B1911 -93.796 -8.908 -6.325 1.00 31.14 O
ATOM 24 OP2 A B1911 -96.242 -8.926 -7.041 1.00 31.14 O
ATOM 25 O5' A B1911 -94.897 -6.831 -7.176 1.00 31.13 O
TER
ATOM 2 P A A1905 -104.946 -0.526 -10.364 1.00 28.49 P
ATOM 3 OP1 A A1905 -105.973 0.165 -11.203 1.00 28.49 O
ATOM 4 OP2 A A1905 -104.874 -2.011 -10.392 1.00 28.49 O
ATOM 5 O5' A A1905 -103.508 0.089 -10.651 1.00 28.49 O
ATOM 6 C5' A A1905 -103.253 1.459 -10.428 1.00 28.49 C
ATOM 7 C4' A A1905 -102.201 1.975 -11.359 1.00 28.49 C
ATOM 8 O4' A A1905 -100.904 1.750 -10.791 1.00 28.49 O
ATOM 9 C3' A A1905 -102.121 1.313 -12.720 1.00 28.49 C
ATOM 10 O3' A A1905 -103.097 1.813 -13.629 1.00 28.49 O
ATOM 11 C2' A A1905 -100.675 1.588 -13.151 1.00 28.49 C
ATOM 12 O2' A A1905 -100.578 2.803 -13.874 1.00 28.49 O
ATOM 13 C1' A A1905 -99.950 1.760 -11.812 1.00 28.49 C
ATOM 14 N9 A A1905 -98.962 0.708 -11.550 1.00 27.91 N
ATOM 15 C8 A A1905 -98.969 -0.642 -11.765 1.00 27.91 C
ATOM 16 N7 A A1905 -97.855 -1.213 -11.374 1.00 27.91 N
ATOM 17 C5 A A1905 -97.081 -0.176 -10.869 1.00 27.91 C
ATOM 18 C6 A A1905 -95.802 -0.104 -10.297 1.00 27.91 C
ATOM 19 N6 A A1905 -94.984 -1.143 -10.104 1.00 27.91 N
ATOM 20 N1 A A1905 -95.362 1.109 -9.925 1.00 27.91 N
ATOM 21 C2 A A1905 -96.144 2.168 -10.106 1.00 27.91 C
ATOM 22 N3 A A1905 -97.354 2.223 -10.628 1.00 27.91 N
ATOM 23 C4 A A1905 -97.760 1.006 -10.986 1.00 27.91 C
ATOM 24 P A A1906 -103.317 1.105 -15.057 1.00 66.34 P
ATOM 25 OP1 A A1906 -104.778 0.948 -15.242 1.00 66.34 O
ATOM 26 OP2 A A1906 -102.463 -0.102 -15.082 1.00 66.34 O
ATOM 27 O5' A A1906 -102.752 2.179 -16.079 1.00 66.34 O
TER
ATOM 1 O3' A B1909 -98.121 -11.031 -12.884 1.00 36.99 O
ATOM 2 P U B1910 -98.719 -10.782 -11.417 1.00 30.02 P
ATOM 3 OP1 U B1910 -98.859 -12.125 -10.763 1.00 30.02 O
ATOM 4 OP2 U B1910 -99.937 -9.918 -11.580 1.00 30.02 O
ATOM 5 O5' U B1910 -97.558 -9.957 -10.706 1.00 30.02 O
ATOM 6 C5' U B1910 -96.215 -10.394 -10.778 1.00 30.02 C
ATOM 7 C4' U B1910 -95.278 -9.239 -10.936 1.00 30.02 C
ATOM 8 O4' U B1910 -95.691 -8.425 -12.060 1.00 30.02 O
ATOM 9 C3' U B1910 -95.233 -8.266 -9.783 1.00 30.02 C
ATOM 10 O3' U B1910 -94.438 -8.723 -8.718 1.00 30.02 O
ATOM 11 C2' U B1910 -94.687 -7.026 -10.442 1.00 30.02 C
ATOM 12 O2' U B1910 -93.298 -7.156 -10.649 1.00 30.02 O
ATOM 13 C1' U B1910 -95.382 -7.076 -11.800 1.00 30.02 C
ATOM 14 N1 U B1910 -96.642 -6.277 -11.816 1.00 30.05 N
ATOM 15 C2 U B1910 -96.542 -4.920 -11.520 1.00 30.05 C
ATOM 16 O2 U B1910 -95.484 -4.363 -11.260 1.00 30.05 O
ATOM 17 N3 U B1910 -97.723 -4.228 -11.530 1.00 30.05 N
ATOM 18 C4 U B1910 -98.963 -4.721 -11.815 1.00 30.05 C
ATOM 19 O4 U B1910 -99.905 -3.945 -11.790 1.00 30.05 O
ATOM 20 C5 U B1910 -99.017 -6.114 -12.114 1.00 30.05 C
ATOM 21 C6 U B1910 -97.881 -6.825 -12.105 1.00 30.05 C
ATOM 22 P A B1911 -94.870 -8.410 -7.211 1.00 31.13 P
ATOM 23 OP1 A B1911 -93.796 -8.908 -6.325 1.00 31.14 O
ATOM 24 OP2 A B1911 -96.242 -8.926 -7.041 1.00 31.14 O
ATOM 25 O5' A B1911 -94.897 -6.831 -7.176 1.00 31.13 O
TER
Atoms:
OP1: (-105.973,0.165,-11.203)
OP2: (-104.874,-2.011,-10.392)
C3': (-102.121,1.313,-12.720)
C1': (-99.950,1.760,-11.812)
C5': (-103.253,1.459,-10.428)
O4': (-100.904,1.750,-10.791)
C8: (-98.969,-0.642,-11.765)
O2': (-100.578,2.803,-13.874)
C6: (-95.802,-0.104,-10.297)
C5: (-97.081,-0.176,-10.869)
C4: (-97.760,1.006,-10.986)
P: (-104.946,-0.526,-10.364)
C4': (-102.201,1.975,-11.359)
C2': (-100.675,1.588,-13.151)
C2: (-96.144,2.168,-10.106)
N1: (-95.362,1.109,-9.925)
N3: (-97.354,2.223,-10.628)
N6: (-94.984,-1.143,-10.104)
N7: (-97.855,-1.213,-11.374)
N9: (-98.962,0.708,-11.550)
O5': (-103.508,0.089,-10.651)
O3': (-103.097,1.813,-13.629)
OP2: (-104.874,-2.011,-10.392)
C3': (-102.121,1.313,-12.720)
C1': (-99.950,1.760,-11.812)
C5': (-103.253,1.459,-10.428)
O4': (-100.904,1.750,-10.791)
C8: (-98.969,-0.642,-11.765)
O2': (-100.578,2.803,-13.874)
C6: (-95.802,-0.104,-10.297)
C5: (-97.081,-0.176,-10.869)
C4: (-97.760,1.006,-10.986)
P: (-104.946,-0.526,-10.364)
C4': (-102.201,1.975,-11.359)
C2': (-100.675,1.588,-13.151)
C2: (-96.144,2.168,-10.106)
N1: (-95.362,1.109,-9.925)
N3: (-97.354,2.223,-10.628)
N6: (-94.984,-1.143,-10.104)
N7: (-97.855,-1.213,-11.374)
N9: (-98.962,0.708,-11.550)
O5': (-103.508,0.089,-10.651)
O3': (-103.097,1.813,-13.629)
C4: (-98.963,-4.721,-11.815)
N3: (-97.723,-4.228,-11.530)
OP1: (-98.859,-12.125,-10.763)
OP2: (-99.937,-9.918,-11.580)
C2: (-96.542,-4.920,-11.520)
C1': (-95.382,-7.076,-11.800)
C3': (-95.233,-8.266,-9.783)
O5': (-97.558,-9.957,-10.706)
O4': (-95.691,-8.425,-12.060)
C5': (-96.215,-10.394,-10.778)
P: (-98.719,-10.782,-11.417)
C4': (-95.278,-9.239,-10.936)
C2': (-94.687,-7.026,-10.442)
O2': (-93.298,-7.156,-10.649)
N1: (-96.642,-6.277,-11.816)
O4: (-99.905,-3.945,-11.790)
O2: (-95.484,-4.363,-11.260)
C6: (-97.881,-6.825,-12.105)
C5: (-99.017,-6.114,-12.114)
O3': (-94.438,-8.723,-8.718)
N3: (-97.723,-4.228,-11.530)
OP1: (-98.859,-12.125,-10.763)
OP2: (-99.937,-9.918,-11.580)
C2: (-96.542,-4.920,-11.520)
C1': (-95.382,-7.076,-11.800)
C3': (-95.233,-8.266,-9.783)
O5': (-97.558,-9.957,-10.706)
O4': (-95.691,-8.425,-12.060)
C5': (-96.215,-10.394,-10.778)
P: (-98.719,-10.782,-11.417)
C4': (-95.278,-9.239,-10.936)
C2': (-94.687,-7.026,-10.442)
O2': (-93.298,-7.156,-10.649)
N1: (-96.642,-6.277,-11.816)
O4: (-99.905,-3.945,-11.790)
O2: (-95.484,-4.363,-11.260)
C6: (-97.881,-6.825,-12.105)
C5: (-99.017,-6.114,-12.114)
O3': (-94.438,-8.723,-8.718)
Image (generated by PyMOL):