Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:1280:1282
Extra
PDB:
ATOM 1 O3' G A 279 41.713 -44.569 102.658 1.00 40.14 O
ATOM 2 P G A 280 40.336 -45.391 102.850 1.00 42.49 P
ATOM 3 OP1 G A 280 39.288 -44.407 102.905 1.00 42.27 O
ATOM 4 OP2 G A 280 40.496 -46.280 103.989 1.00 42.95 O
ATOM 5 O5' G A 280 40.220 -46.238 101.507 1.00 42.38 O
ATOM 6 C5' G A 280 39.587 -47.516 101.508 1.00 42.66 C
ATOM 7 C4' G A 280 39.487 -48.130 100.123 1.00 42.51 C
ATOM 8 O4' G A 280 40.743 -48.037 99.424 1.00 42.38 O
ATOM 9 C3' G A 280 39.100 -49.587 100.115 1.00 42.84 C
ATOM 10 O3' G A 280 37.760 -49.741 99.770 1.00 42.78 O
ATOM 11 C2' G A 280 40.028 -50.270 99.133 1.00 42.84 C
ATOM 12 O2' G A 280 39.373 -50.424 97.888 1.00 42.62 O
ATOM 13 C1' G A 280 41.176 -49.291 98.979 1.00 42.60 C
ATOM 14 N9 G A 280 42.332 -49.611 99.802 1.00 42.89 N
ATOM 15 C8 G A 280 43.560 -49.067 99.502 1.00 42.75 C
ATOM 16 N7 G A 280 44.457 -49.292 100.408 1.00 43.03 N
ATOM 17 C5 G A 280 43.749 -49.958 101.392 1.00 43.37 C
ATOM 18 C6 G A 280 44.203 -50.432 102.633 1.00 43.78 C
ATOM 19 O6 G A 280 45.356 -50.339 103.067 1.00 43.91 O
ATOM 20 N1 G A 280 43.195 -51.073 103.374 1.00 44.05 N
ATOM 21 C2 G A 280 41.889 -51.196 102.953 1.00 43.94 C
ATOM 22 N2 G A 280 41.042 -51.834 103.796 1.00 44.26 N
ATOM 23 N3 G A 280 41.447 -50.728 101.783 1.00 43.55 N
ATOM 24 C4 G A 280 42.423 -50.146 101.057 1.00 43.28 C
ATOM 25 P A A 281 36.950 -51.019 100.231 1.00 46.28 P
ATOM 26 OP1 A A 281 37.796 -52.204 99.989 1.00 46.55 O
ATOM 27 OP2 A A 281 35.614 -50.934 99.557 1.00 46.11 O
ATOM 28 O5' A A 281 36.771 -50.763 101.776 1.00 46.53 O
TER
ATOM 1 O3' A B 281 35.775 -51.096 105.235 1.00 47.37 O
ATOM 2 P A B 282 36.874 -51.671 106.257 1.00 46.83 P
ATOM 3 OP1 A B 282 37.557 -52.787 105.602 1.00 46.98 O
ATOM 4 OP2 A B 282 36.180 -51.923 107.535 1.00 47.19 O
ATOM 5 O5' A B 282 37.893 -50.473 106.420 1.00 46.59 O
ATOM 6 C5' A B 282 38.663 -50.006 105.329 1.00 46.24 C
ATOM 7 C4' A B 282 38.583 -48.513 105.248 1.00 45.86 C
ATOM 8 O4' A B 282 37.275 -48.137 104.737 1.00 45.62 O
ATOM 9 C3' A B 282 38.722 -47.803 106.578 1.00 46.02 C
ATOM 10 O3' A B 282 40.017 -47.296 106.766 1.00 45.98 O
ATOM 11 C2' A B 282 37.656 -46.706 106.536 1.00 45.73 C
ATOM 12 O2' A B 282 38.154 -45.562 105.902 1.00 45.34 O
ATOM 13 C1' A B 282 36.623 -47.283 105.621 1.00 45.62 C
ATOM 14 N9 A B 282 35.617 -48.062 106.342 1.00 45.96 N
ATOM 15 C8 A B 282 35.717 -48.634 107.571 1.00 46.39 C
ATOM 16 N7 A B 282 34.653 -49.288 107.924 1.00 46.62 N
ATOM 17 C5 A B 282 33.805 -49.091 106.851 1.00 46.31 C
ATOM 18 C6 A B 282 32.509 -49.541 106.626 1.00 46.36 C
ATOM 19 N6 A B 282 31.919 -50.295 107.563 1.00 46.77 N
ATOM 20 N1 A B 282 31.911 -49.228 105.445 1.00 46.01 N
ATOM 21 C2 A B 282 32.592 -48.497 104.570 1.00 45.63 C
ATOM 22 N3 A B 282 33.828 -48.018 104.676 1.00 45.55 N
ATOM 23 C4 A B 282 34.381 -48.368 105.855 1.00 45.90 C
ATOM 24 P U B 283 41.255 -48.243 107.131 1.00 46.78 P
ATOM 25 OP1 U B 283 41.767 -48.821 105.872 1.00 46.63 O
ATOM 26 OP2 U B 283 40.811 -49.147 108.202 1.00 47.25 O
ATOM 27 O5' U B 283 42.302 -47.197 107.732 1.00 46.74 O
TER
ATOM 2 P G A 280 40.336 -45.391 102.850 1.00 42.49 P
ATOM 3 OP1 G A 280 39.288 -44.407 102.905 1.00 42.27 O
ATOM 4 OP2 G A 280 40.496 -46.280 103.989 1.00 42.95 O
ATOM 5 O5' G A 280 40.220 -46.238 101.507 1.00 42.38 O
ATOM 6 C5' G A 280 39.587 -47.516 101.508 1.00 42.66 C
ATOM 7 C4' G A 280 39.487 -48.130 100.123 1.00 42.51 C
ATOM 8 O4' G A 280 40.743 -48.037 99.424 1.00 42.38 O
ATOM 9 C3' G A 280 39.100 -49.587 100.115 1.00 42.84 C
ATOM 10 O3' G A 280 37.760 -49.741 99.770 1.00 42.78 O
ATOM 11 C2' G A 280 40.028 -50.270 99.133 1.00 42.84 C
ATOM 12 O2' G A 280 39.373 -50.424 97.888 1.00 42.62 O
ATOM 13 C1' G A 280 41.176 -49.291 98.979 1.00 42.60 C
ATOM 14 N9 G A 280 42.332 -49.611 99.802 1.00 42.89 N
ATOM 15 C8 G A 280 43.560 -49.067 99.502 1.00 42.75 C
ATOM 16 N7 G A 280 44.457 -49.292 100.408 1.00 43.03 N
ATOM 17 C5 G A 280 43.749 -49.958 101.392 1.00 43.37 C
ATOM 18 C6 G A 280 44.203 -50.432 102.633 1.00 43.78 C
ATOM 19 O6 G A 280 45.356 -50.339 103.067 1.00 43.91 O
ATOM 20 N1 G A 280 43.195 -51.073 103.374 1.00 44.05 N
ATOM 21 C2 G A 280 41.889 -51.196 102.953 1.00 43.94 C
ATOM 22 N2 G A 280 41.042 -51.834 103.796 1.00 44.26 N
ATOM 23 N3 G A 280 41.447 -50.728 101.783 1.00 43.55 N
ATOM 24 C4 G A 280 42.423 -50.146 101.057 1.00 43.28 C
ATOM 25 P A A 281 36.950 -51.019 100.231 1.00 46.28 P
ATOM 26 OP1 A A 281 37.796 -52.204 99.989 1.00 46.55 O
ATOM 27 OP2 A A 281 35.614 -50.934 99.557 1.00 46.11 O
ATOM 28 O5' A A 281 36.771 -50.763 101.776 1.00 46.53 O
TER
ATOM 1 O3' A B 281 35.775 -51.096 105.235 1.00 47.37 O
ATOM 2 P A B 282 36.874 -51.671 106.257 1.00 46.83 P
ATOM 3 OP1 A B 282 37.557 -52.787 105.602 1.00 46.98 O
ATOM 4 OP2 A B 282 36.180 -51.923 107.535 1.00 47.19 O
ATOM 5 O5' A B 282 37.893 -50.473 106.420 1.00 46.59 O
ATOM 6 C5' A B 282 38.663 -50.006 105.329 1.00 46.24 C
ATOM 7 C4' A B 282 38.583 -48.513 105.248 1.00 45.86 C
ATOM 8 O4' A B 282 37.275 -48.137 104.737 1.00 45.62 O
ATOM 9 C3' A B 282 38.722 -47.803 106.578 1.00 46.02 C
ATOM 10 O3' A B 282 40.017 -47.296 106.766 1.00 45.98 O
ATOM 11 C2' A B 282 37.656 -46.706 106.536 1.00 45.73 C
ATOM 12 O2' A B 282 38.154 -45.562 105.902 1.00 45.34 O
ATOM 13 C1' A B 282 36.623 -47.283 105.621 1.00 45.62 C
ATOM 14 N9 A B 282 35.617 -48.062 106.342 1.00 45.96 N
ATOM 15 C8 A B 282 35.717 -48.634 107.571 1.00 46.39 C
ATOM 16 N7 A B 282 34.653 -49.288 107.924 1.00 46.62 N
ATOM 17 C5 A B 282 33.805 -49.091 106.851 1.00 46.31 C
ATOM 18 C6 A B 282 32.509 -49.541 106.626 1.00 46.36 C
ATOM 19 N6 A B 282 31.919 -50.295 107.563 1.00 46.77 N
ATOM 20 N1 A B 282 31.911 -49.228 105.445 1.00 46.01 N
ATOM 21 C2 A B 282 32.592 -48.497 104.570 1.00 45.63 C
ATOM 22 N3 A B 282 33.828 -48.018 104.676 1.00 45.55 N
ATOM 23 C4 A B 282 34.381 -48.368 105.855 1.00 45.90 C
ATOM 24 P U B 283 41.255 -48.243 107.131 1.00 46.78 P
ATOM 25 OP1 U B 283 41.767 -48.821 105.872 1.00 46.63 O
ATOM 26 OP2 U B 283 40.811 -49.147 108.202 1.00 47.25 O
ATOM 27 O5' U B 283 42.302 -47.197 107.732 1.00 46.74 O
TER
Atoms:
OP1: (39.288,-44.407,102.905)
OP2: (40.496,-46.280,103.989)
C3': (39.100,-49.587,100.115)
C1': (41.176,-49.291,98.979)
C5': (39.587,-47.516,101.508)
O6: (45.356,-50.339,103.067)
O4': (40.743,-48.037,99.424)
C8: (43.560,-49.067,99.502)
C2: (41.889,-51.196,102.953)
C6: (44.203,-50.432,102.633)
C5: (43.749,-49.958,101.392)
C4: (42.423,-50.146,101.057)
P: (40.336,-45.391,102.850)
C4': (39.487,-48.130,100.123)
C2': (40.028,-50.270,99.133)
O2': (39.373,-50.424,97.888)
N1: (43.195,-51.073,103.374)
N2: (41.042,-51.834,103.796)
N3: (41.447,-50.728,101.783)
N7: (44.457,-49.292,100.408)
N9: (42.332,-49.611,99.802)
O5': (40.220,-46.238,101.507)
O3': (37.760,-49.741,99.770)
OP2: (40.496,-46.280,103.989)
C3': (39.100,-49.587,100.115)
C1': (41.176,-49.291,98.979)
C5': (39.587,-47.516,101.508)
O6: (45.356,-50.339,103.067)
O4': (40.743,-48.037,99.424)
C8: (43.560,-49.067,99.502)
C2: (41.889,-51.196,102.953)
C6: (44.203,-50.432,102.633)
C5: (43.749,-49.958,101.392)
C4: (42.423,-50.146,101.057)
P: (40.336,-45.391,102.850)
C4': (39.487,-48.130,100.123)
C2': (40.028,-50.270,99.133)
O2': (39.373,-50.424,97.888)
N1: (43.195,-51.073,103.374)
N2: (41.042,-51.834,103.796)
N3: (41.447,-50.728,101.783)
N7: (44.457,-49.292,100.408)
N9: (42.332,-49.611,99.802)
O5': (40.220,-46.238,101.507)
O3': (37.760,-49.741,99.770)
OP1: (37.557,-52.787,105.602)
OP2: (36.180,-51.923,107.535)
C3': (38.722,-47.803,106.578)
C1': (36.623,-47.283,105.621)
C5': (38.663,-50.006,105.329)
O4': (37.275,-48.137,104.737)
C8: (35.717,-48.634,107.571)
O2': (38.154,-45.562,105.902)
C6: (32.509,-49.541,106.626)
C5: (33.805,-49.091,106.851)
C4: (34.381,-48.368,105.855)
P: (36.874,-51.671,106.257)
C4': (38.583,-48.513,105.248)
C2': (37.656,-46.706,106.536)
C2: (32.592,-48.497,104.570)
N1: (31.911,-49.228,105.445)
N3: (33.828,-48.018,104.676)
N6: (31.919,-50.295,107.563)
N7: (34.653,-49.288,107.924)
N9: (35.617,-48.062,106.342)
O5': (37.893,-50.473,106.420)
O3': (40.017,-47.296,106.766)
OP2: (36.180,-51.923,107.535)
C3': (38.722,-47.803,106.578)
C1': (36.623,-47.283,105.621)
C5': (38.663,-50.006,105.329)
O4': (37.275,-48.137,104.737)
C8: (35.717,-48.634,107.571)
O2': (38.154,-45.562,105.902)
C6: (32.509,-49.541,106.626)
C5: (33.805,-49.091,106.851)
C4: (34.381,-48.368,105.855)
P: (36.874,-51.671,106.257)
C4': (38.583,-48.513,105.248)
C2': (37.656,-46.706,106.536)
C2: (32.592,-48.497,104.570)
N1: (31.911,-49.228,105.445)
N3: (33.828,-48.018,104.676)
N6: (31.919,-50.295,107.563)
N7: (34.653,-49.288,107.924)
N9: (35.617,-48.062,106.342)
O5': (37.893,-50.473,106.420)
O3': (40.017,-47.296,106.766)
Image (generated by PyMOL):