ClaRNA

Doublet info:

Details

Nucleotide types: AU
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 2VQE:A107:A277

Extra

PDB:
ATOM 1 O3' U A 106 138.730 69.845 -17.549 1.00 26.89 O
ATOM 2 P A A 107 139.543 70.953 -18.384 1.00 27.74 P
ATOM 3 OP1 A A 107 139.126 70.800 -19.821 1.00 26.16 O
ATOM 4 OP2 A A 107 140.970 70.824 -18.024 1.00 25.92 O
ATOM 5 O5' A A 107 139.003 72.354 -17.809 1.00 26.75 O
ATOM 6 C5' A A 107 137.793 72.963 -18.310 1.00 29.03 C
ATOM 7 C4' A A 107 138.060 74.394 -18.725 1.00 30.55 C
ATOM 8 O4' A A 107 138.612 75.089 -17.589 1.00 31.39 O
ATOM 9 C3' A A 107 139.118 74.550 -19.803 1.00 32.00 C
ATOM 10 O3' A A 107 138.624 74.323 -21.163 1.00 35.13 O
ATOM 11 C2' A A 107 139.854 75.857 -19.490 1.00 32.29 C
ATOM 12 O2' A A 107 139.567 76.979 -20.301 1.00 36.40 O
ATOM 13 C1' A A 107 139.447 76.126 -18.038 1.00 31.30 C
ATOM 14 N9 A A 107 140.514 76.327 -17.061 1.00 29.11 N
ATOM 15 C8 A A 107 141.595 75.539 -16.766 1.00 29.06 C
ATOM 16 N7 A A 107 142.358 76.025 -15.814 1.00 28.67 N
ATOM 17 C5 A A 107 141.736 77.217 -15.460 1.00 27.14 C
ATOM 18 C6 A A 107 142.053 78.217 -14.514 1.00 25.92 C
ATOM 19 N6 A A 107 143.120 78.177 -13.711 1.00 26.10 N
ATOM 20 N1 A A 107 141.225 79.276 -14.422 1.00 24.64 N
ATOM 21 C2 A A 107 140.159 79.327 -15.224 1.00 25.10 C
ATOM 22 N3 A A 107 139.756 78.460 -16.149 1.00 27.39 N
ATOM 23 C4 A A 107 140.600 77.413 -16.219 1.00 28.52 C
ATOM 24 P A A 108 137.311 75.088 -21.738 1.00 33.55 P
ATOM 25 OP1 A A 108 137.274 74.740 -23.195 1.00 35.15 O
ATOM 26 OP2 A A 108 137.293 76.502 -21.325 1.00 34.10 O
ATOM 27 O5' A A 108 136.087 74.331 -21.076 1.00 33.96 O
TER

ATOM 1 O3' G B 276 151.875 72.302 -15.864 1.00 30.48 O
ATOM 2 P U B 277 151.041 71.468 -14.768 1.00 32.38 P
ATOM 3 OP1 U B 277 151.977 70.865 -13.764 1.00 34.39 O
ATOM 4 OP2 U B 277 150.081 70.600 -15.495 1.00 30.98 O
ATOM 5 O5' U B 277 150.247 72.586 -13.995 1.00 31.35 O
ATOM 6 C5' U B 277 150.940 73.638 -13.321 1.00 28.90 C
ATOM 7 C4' U B 277 149.966 74.709 -12.913 1.00 28.46 C
ATOM 8 O4' U B 277 149.397 75.320 -14.097 1.00 28.27 O
ATOM 9 C3' U B 277 148.755 74.228 -12.139 1.00 28.76 C
ATOM 10 O3' U B 277 149.002 74.080 -10.773 1.00 30.25 O
ATOM 11 C2' U B 277 147.742 75.327 -12.391 1.00 29.18 C
ATOM 12 O2' U B 277 147.943 76.437 -11.542 1.00 29.05 O
ATOM 13 C1' U B 277 148.062 75.711 -13.833 1.00 29.59 C
ATOM 14 N1 U B 277 147.152 75.034 -14.770 1.00 29.64 N
ATOM 15 C2 U B 277 145.872 75.540 -14.871 1.00 29.56 C
ATOM 16 O2 U B 277 145.505 76.529 -14.254 1.00 29.61 O
ATOM 17 N3 U B 277 145.040 74.855 -15.719 1.00 29.52 N
ATOM 18 C4 U B 277 145.356 73.746 -16.473 1.00 31.28 C
ATOM 19 O4 U B 277 144.496 73.244 -17.211 1.00 34.85 O
ATOM 20 C5 U B 277 146.705 73.297 -16.329 1.00 30.42 C
ATOM 21 C6 U B 277 147.536 73.940 -15.503 1.00 29.82 C
ATOM 22 P A B 278 148.092 73.067 -9.922 1.00 31.50 P
ATOM 23 OP1 A B 278 148.619 72.995 -8.508 1.00 31.37 O
ATOM 24 OP2 A B 278 147.925 71.839 -10.743 1.00 31.14 O
ATOM 25 O5' A B 278 146.696 73.776 -9.875 1.00 31.30 O
TER

Atoms:
OP1: (139.126,70.800,-19.821)
OP2: (140.970,70.824,-18.024)
C3': (139.118,74.550,-19.803)
C1': (139.447,76.126,-18.038)
C5': (137.793,72.963,-18.310)
O4': (138.612,75.089,-17.589)
C8: (141.595,75.539,-16.766)
O2': (139.567,76.979,-20.301)
C6: (142.053,78.217,-14.514)
C5: (141.736,77.217,-15.460)
C4: (140.600,77.413,-16.219)
P: (139.543,70.953,-18.384)
C4': (138.060,74.394,-18.725)
C2': (139.854,75.857,-19.490)
C2: (140.159,79.327,-15.224)
N1: (141.225,79.276,-14.422)
N3: (139.756,78.460,-16.149)
N6: (143.120,78.177,-13.711)
N7: (142.358,76.025,-15.814)
N9: (140.514,76.327,-17.061)
O5': (139.003,72.354,-17.809)
O3': (138.624,74.323,-21.163)
C4: (145.356,73.746,-16.473)
N3: (145.040,74.855,-15.719)
OP1: (151.977,70.865,-13.764)
OP2: (150.081,70.600,-15.495)
C2: (145.872,75.540,-14.871)
C1': (148.062,75.711,-13.833)
C3': (148.755,74.228,-12.139)
O5': (150.247,72.586,-13.995)
O4': (149.397,75.320,-14.097)
C5': (150.940,73.638,-13.321)
P: (151.041,71.468,-14.768)
C4': (149.966,74.709,-12.913)
C2': (147.742,75.327,-12.391)
O2': (147.943,76.437,-11.542)
N1: (147.152,75.034,-14.770)
O4: (144.496,73.244,-17.211)
O2: (145.505,76.529,-14.254)
C6: (147.536,73.940,-15.503)
C5: (146.705,73.297,-16.329)
O3': (149.002,74.080,-10.773)
Image (generated by PyMOL):
PyMOL image
show in jmol