Doublet info:
Details
Nucleotide types:
CC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:0546:0545
Extra
PDB:
ATOM 1 O3' C A 545 -4.707 118.983 98.734 1.00 74.50 O
ATOM 2 P C A 546 -5.225 117.543 99.225 1.00 78.16 P
ATOM 3 OP1 C A 546 -4.294 117.085 100.287 1.00 78.73 O
ATOM 4 OP2 C A 546 -5.469 116.673 98.041 1.00 77.40 O
ATOM 5 O5' C A 546 -6.626 117.870 99.907 1.00 79.84 O
ATOM 6 C5' C A 546 -6.712 118.785 101.014 1.00 81.25 C
ATOM 7 C4' C A 546 -8.155 119.119 101.306 1.00 83.14 C
ATOM 8 O4' C A 546 -8.733 119.815 100.170 1.00 82.84 O
ATOM 9 C3' C A 546 -9.086 117.935 101.522 1.00 84.11 C
ATOM 10 O3' C A 546 -8.988 117.409 102.848 1.00 84.89 O
ATOM 11 C2' C A 546 -10.448 118.549 101.225 1.00 83.85 C
ATOM 12 O2' C A 546 -10.955 119.313 102.300 1.00 84.69 O
ATOM 13 C1' C A 546 -10.109 119.483 100.062 1.00 83.55 C
ATOM 14 N1 C A 546 -10.355 118.877 98.740 1.00 83.42 N
ATOM 15 C2 C A 546 -11.628 119.015 98.160 1.00 83.48 C
ATOM 16 O2 C A 546 -12.514 119.623 98.784 1.00 83.82 O
ATOM 17 N3 C A 546 -11.860 118.480 96.939 1.00 82.77 N
ATOM 18 C4 C A 546 -10.888 117.824 96.303 1.00 82.90 C
ATOM 19 N4 C A 546 -11.162 117.317 95.099 1.00 82.06 N
ATOM 20 C5 C A 546 -9.591 117.659 96.872 1.00 83.84 C
ATOM 21 C6 C A 546 -9.370 118.195 98.080 1.00 83.55 C
ATOM 22 P U A 547 -9.327 115.857 103.126 1.00 86.63 P
ATOM 23 OP1 U A 547 -8.487 115.414 104.266 1.00 85.88 O
ATOM 24 OP2 U A 547 -9.270 115.112 101.842 1.00 84.90 O
ATOM 25 O5' U A 547 -10.849 115.871 103.602 1.00 86.70 O
TER
ATOM 1 O3' C B 544 -2.346 118.911 93.117 1.00 58.35 O
ATOM 2 P C B 545 -3.096 117.912 94.129 1.00 61.12 P
ATOM 3 OP1 C B 545 -2.036 117.281 94.961 1.00 60.36 O
ATOM 4 OP2 C B 545 -4.042 117.045 93.367 1.00 58.18 O
ATOM 5 O5' C B 545 -3.924 118.897 95.066 1.00 60.70 O
ATOM 6 C5' C B 545 -3.245 119.772 95.985 1.00 64.24 C
ATOM 7 C4' C B 545 -4.241 120.474 96.874 1.00 67.73 C
ATOM 8 O4' C B 545 -5.050 121.381 96.081 1.00 68.50 O
ATOM 9 C3' C B 545 -5.247 119.561 97.554 1.00 70.13 C
ATOM 10 O3' C B 545 -4.707 118.983 98.734 1.00 74.50 O
ATOM 11 C2' C B 545 -6.410 120.505 97.817 1.00 69.11 C
ATOM 12 O2' C B 545 -6.186 121.347 98.932 1.00 68.19 O
ATOM 13 C1' C B 545 -6.393 121.348 96.539 1.00 68.15 C
ATOM 14 N1 C B 545 -7.226 120.789 95.457 1.00 67.11 N
ATOM 15 C2 C B 545 -8.595 121.076 95.432 1.00 66.32 C
ATOM 16 O2 C B 545 -9.081 121.782 96.332 1.00 66.93 O
ATOM 17 N3 C B 545 -9.355 120.577 94.430 1.00 65.43 N
ATOM 18 C4 C B 545 -8.798 119.819 93.483 1.00 65.18 C
ATOM 19 N4 C B 545 -9.581 119.354 92.509 1.00 64.53 N
ATOM 20 C5 C B 545 -7.412 119.504 93.489 1.00 66.09 C
ATOM 21 C6 C B 545 -6.670 120.002 94.484 1.00 66.65 C
ATOM 22 P C B 546 -5.225 117.543 99.225 1.00 78.16 P
ATOM 23 OP1 C B 546 -4.294 117.085 100.287 1.00 78.73 O
ATOM 24 OP2 C B 546 -5.469 116.673 98.041 1.00 77.40 O
ATOM 25 O5' C B 546 -6.626 117.870 99.907 1.00 79.84 O
TER
ATOM 2 P C A 546 -5.225 117.543 99.225 1.00 78.16 P
ATOM 3 OP1 C A 546 -4.294 117.085 100.287 1.00 78.73 O
ATOM 4 OP2 C A 546 -5.469 116.673 98.041 1.00 77.40 O
ATOM 5 O5' C A 546 -6.626 117.870 99.907 1.00 79.84 O
ATOM 6 C5' C A 546 -6.712 118.785 101.014 1.00 81.25 C
ATOM 7 C4' C A 546 -8.155 119.119 101.306 1.00 83.14 C
ATOM 8 O4' C A 546 -8.733 119.815 100.170 1.00 82.84 O
ATOM 9 C3' C A 546 -9.086 117.935 101.522 1.00 84.11 C
ATOM 10 O3' C A 546 -8.988 117.409 102.848 1.00 84.89 O
ATOM 11 C2' C A 546 -10.448 118.549 101.225 1.00 83.85 C
ATOM 12 O2' C A 546 -10.955 119.313 102.300 1.00 84.69 O
ATOM 13 C1' C A 546 -10.109 119.483 100.062 1.00 83.55 C
ATOM 14 N1 C A 546 -10.355 118.877 98.740 1.00 83.42 N
ATOM 15 C2 C A 546 -11.628 119.015 98.160 1.00 83.48 C
ATOM 16 O2 C A 546 -12.514 119.623 98.784 1.00 83.82 O
ATOM 17 N3 C A 546 -11.860 118.480 96.939 1.00 82.77 N
ATOM 18 C4 C A 546 -10.888 117.824 96.303 1.00 82.90 C
ATOM 19 N4 C A 546 -11.162 117.317 95.099 1.00 82.06 N
ATOM 20 C5 C A 546 -9.591 117.659 96.872 1.00 83.84 C
ATOM 21 C6 C A 546 -9.370 118.195 98.080 1.00 83.55 C
ATOM 22 P U A 547 -9.327 115.857 103.126 1.00 86.63 P
ATOM 23 OP1 U A 547 -8.487 115.414 104.266 1.00 85.88 O
ATOM 24 OP2 U A 547 -9.270 115.112 101.842 1.00 84.90 O
ATOM 25 O5' U A 547 -10.849 115.871 103.602 1.00 86.70 O
TER
ATOM 1 O3' C B 544 -2.346 118.911 93.117 1.00 58.35 O
ATOM 2 P C B 545 -3.096 117.912 94.129 1.00 61.12 P
ATOM 3 OP1 C B 545 -2.036 117.281 94.961 1.00 60.36 O
ATOM 4 OP2 C B 545 -4.042 117.045 93.367 1.00 58.18 O
ATOM 5 O5' C B 545 -3.924 118.897 95.066 1.00 60.70 O
ATOM 6 C5' C B 545 -3.245 119.772 95.985 1.00 64.24 C
ATOM 7 C4' C B 545 -4.241 120.474 96.874 1.00 67.73 C
ATOM 8 O4' C B 545 -5.050 121.381 96.081 1.00 68.50 O
ATOM 9 C3' C B 545 -5.247 119.561 97.554 1.00 70.13 C
ATOM 10 O3' C B 545 -4.707 118.983 98.734 1.00 74.50 O
ATOM 11 C2' C B 545 -6.410 120.505 97.817 1.00 69.11 C
ATOM 12 O2' C B 545 -6.186 121.347 98.932 1.00 68.19 O
ATOM 13 C1' C B 545 -6.393 121.348 96.539 1.00 68.15 C
ATOM 14 N1 C B 545 -7.226 120.789 95.457 1.00 67.11 N
ATOM 15 C2 C B 545 -8.595 121.076 95.432 1.00 66.32 C
ATOM 16 O2 C B 545 -9.081 121.782 96.332 1.00 66.93 O
ATOM 17 N3 C B 545 -9.355 120.577 94.430 1.00 65.43 N
ATOM 18 C4 C B 545 -8.798 119.819 93.483 1.00 65.18 C
ATOM 19 N4 C B 545 -9.581 119.354 92.509 1.00 64.53 N
ATOM 20 C5 C B 545 -7.412 119.504 93.489 1.00 66.09 C
ATOM 21 C6 C B 545 -6.670 120.002 94.484 1.00 66.65 C
ATOM 22 P C B 546 -5.225 117.543 99.225 1.00 78.16 P
ATOM 23 OP1 C B 546 -4.294 117.085 100.287 1.00 78.73 O
ATOM 24 OP2 C B 546 -5.469 116.673 98.041 1.00 77.40 O
ATOM 25 O5' C B 546 -6.626 117.870 99.907 1.00 79.84 O
TER
Atoms:
C2: (-11.628,119.015,98.160)
OP1: (-4.294,117.085,100.287)
OP2: (-5.469,116.673,98.041)
C4: (-10.888,117.824,96.303)
O5': (-6.626,117.870,99.907)
C3': (-9.086,117.935,101.522)
C1': (-10.109,119.483,100.062)
O4': (-8.733,119.815,100.170)
C5': (-6.712,118.785,101.014)
P: (-5.225,117.543,99.225)
O2: (-12.514,119.623,98.784)
C4': (-8.155,119.119,101.306)
C2': (-10.448,118.549,101.225)
O2': (-10.955,119.313,102.300)
N1: (-10.355,118.877,98.740)
N3: (-11.860,118.480,96.939)
N4: (-11.162,117.317,95.099)
C6: (-9.370,118.195,98.080)
C5: (-9.591,117.659,96.872)
O3': (-8.988,117.409,102.848)
OP1: (-4.294,117.085,100.287)
OP2: (-5.469,116.673,98.041)
C4: (-10.888,117.824,96.303)
O5': (-6.626,117.870,99.907)
C3': (-9.086,117.935,101.522)
C1': (-10.109,119.483,100.062)
O4': (-8.733,119.815,100.170)
C5': (-6.712,118.785,101.014)
P: (-5.225,117.543,99.225)
O2: (-12.514,119.623,98.784)
C4': (-8.155,119.119,101.306)
C2': (-10.448,118.549,101.225)
O2': (-10.955,119.313,102.300)
N1: (-10.355,118.877,98.740)
N3: (-11.860,118.480,96.939)
N4: (-11.162,117.317,95.099)
C6: (-9.370,118.195,98.080)
C5: (-9.591,117.659,96.872)
O3': (-8.988,117.409,102.848)
C2: (-8.595,121.076,95.432)
OP1: (-2.036,117.281,94.961)
OP2: (-4.042,117.045,93.367)
C4: (-8.798,119.819,93.483)
O5': (-3.924,118.897,95.066)
C3': (-5.247,119.561,97.554)
C1': (-6.393,121.348,96.539)
O4': (-5.050,121.381,96.081)
C5': (-3.245,119.772,95.985)
P: (-3.096,117.912,94.129)
O2: (-9.081,121.782,96.332)
C4': (-4.241,120.474,96.874)
C2': (-6.410,120.505,97.817)
O2': (-6.186,121.347,98.932)
N1: (-7.226,120.789,95.457)
N3: (-9.355,120.577,94.430)
N4: (-9.581,119.354,92.509)
C6: (-6.670,120.002,94.484)
C5: (-7.412,119.504,93.489)
O3': (-4.707,118.983,98.734)
OP1: (-2.036,117.281,94.961)
OP2: (-4.042,117.045,93.367)
C4: (-8.798,119.819,93.483)
O5': (-3.924,118.897,95.066)
C3': (-5.247,119.561,97.554)
C1': (-6.393,121.348,96.539)
O4': (-5.050,121.381,96.081)
C5': (-3.245,119.772,95.985)
P: (-3.096,117.912,94.129)
O2: (-9.081,121.782,96.332)
C4': (-4.241,120.474,96.874)
C2': (-6.410,120.505,97.817)
O2': (-6.186,121.347,98.932)
N1: (-7.226,120.789,95.457)
N3: (-9.355,120.577,94.430)
N4: (-9.581,119.354,92.509)
C6: (-6.670,120.002,94.484)
C5: (-7.412,119.504,93.489)
O3': (-4.707,118.983,98.734)
Image (generated by PyMOL):