Doublet info:
Details
Nucleotide types:
CC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2GDI:X39:X38
Extra
PDB:
ATOM 1 O3' C A 38 -10.935 -8.028 -11.403 1.00 34.08 O
ATOM 2 P C A 39 -11.893 -8.020 -12.683 1.00 33.89 P
ATOM 3 OP1 C A 39 -11.578 -9.227 -13.477 1.00 35.09 O
ATOM 4 OP2 C A 39 -11.795 -6.683 -13.307 1.00 35.19 O
ATOM 5 O5' C A 39 -13.361 -8.174 -12.068 1.00 34.06 O
ATOM 6 C5' C A 39 -13.679 -9.287 -11.240 1.00 33.67 C
ATOM 7 C4' C A 39 -14.922 -9.004 -10.420 1.00 33.71 C
ATOM 8 O4' C A 39 -14.658 -7.908 -9.508 1.00 34.27 O
ATOM 9 C3' C A 39 -16.116 -8.499 -11.215 1.00 33.54 C
ATOM 10 O3' C A 39 -16.775 -9.555 -11.908 1.00 33.48 O
ATOM 11 C2' C A 39 -16.950 -7.884 -10.095 1.00 32.66 C
ATOM 12 O2' C A 39 -17.606 -8.841 -9.284 1.00 32.47 O
ATOM 13 C1' C A 39 -15.858 -7.184 -9.291 1.00 32.72 C
ATOM 14 N1 C A 39 -15.659 -5.766 -9.709 1.00 32.60 N
ATOM 15 C2 C A 39 -16.540 -4.793 -9.226 1.00 32.30 C
ATOM 16 O2 C A 39 -17.449 -5.136 -8.467 1.00 33.05 O
ATOM 17 N3 C A 39 -16.376 -3.504 -9.606 1.00 31.68 N
ATOM 18 C4 C A 39 -15.384 -3.175 -10.431 1.00 31.78 C
ATOM 19 N4 C A 39 -15.268 -1.886 -10.772 1.00 31.35 N
ATOM 20 C5 C A 39 -14.470 -4.151 -10.936 1.00 32.19 C
ATOM 21 C6 C A 39 -14.647 -5.423 -10.557 1.00 31.46 C
ATOM 22 P C A 40 -17.365 -9.281 -13.372 1.00 34.15 P
ATOM 23 OP1 C A 40 -17.748 -10.582 -13.957 1.00 34.08 O
ATOM 24 OP2 C A 40 -16.426 -8.391 -14.087 1.00 33.88 O
ATOM 25 O5' C A 40 -18.692 -8.440 -13.070 1.00 34.63 O
TER
ATOM 1 O3' A B 37 -6.999 -3.283 -11.414 1.00 34.43 O
ATOM 2 P C B 38 -8.147 -3.759 -12.422 1.00 34.64 P
ATOM 3 OP1 C B 38 -7.506 -4.509 -13.525 1.00 34.45 O
ATOM 4 OP2 C B 38 -9.001 -2.587 -12.716 1.00 34.77 O
ATOM 5 O5' C B 38 -9.017 -4.776 -11.540 1.00 34.15 O
ATOM 6 C5' C B 38 -8.457 -6.002 -11.078 1.00 33.60 C
ATOM 7 C4' C B 38 -9.397 -6.692 -10.103 1.00 33.23 C
ATOM 8 O4' C B 38 -9.538 -5.894 -8.899 1.00 32.95 O
ATOM 9 C3' C B 38 -10.827 -6.872 -10.586 1.00 32.89 C
ATOM 10 O3' C B 38 -10.935 -8.028 -11.403 1.00 34.08 O
ATOM 11 C2' C B 38 -11.549 -7.052 -9.259 1.00 32.41 C
ATOM 12 O2' C B 38 -11.330 -8.334 -8.697 1.00 31.15 O
ATOM 13 C1' C B 38 -10.865 -5.986 -8.410 1.00 31.82 C
ATOM 14 N1 C B 38 -11.506 -4.625 -8.463 1.00 31.79 N
ATOM 15 C2 C B 38 -12.579 -4.321 -7.615 1.00 31.75 C
ATOM 16 O2 C B 38 -13.002 -5.183 -6.832 1.00 31.28 O
ATOM 17 N3 C B 38 -13.133 -3.082 -7.673 1.00 31.38 N
ATOM 18 C4 C B 38 -12.659 -2.168 -8.523 1.00 32.25 C
ATOM 19 N4 C B 38 -13.245 -0.964 -8.536 1.00 31.99 N
ATOM 20 C5 C B 38 -11.567 -2.454 -9.396 1.00 31.34 C
ATOM 21 C6 C B 38 -11.028 -3.678 -9.329 1.00 31.37 C
ATOM 22 P C B 39 -11.893 -8.020 -12.683 1.00 33.89 P
ATOM 23 OP1 C B 39 -11.578 -9.227 -13.477 1.00 35.09 O
ATOM 24 OP2 C B 39 -11.795 -6.683 -13.307 1.00 35.19 O
ATOM 25 O5' C B 39 -13.361 -8.174 -12.068 1.00 34.06 O
TER
ATOM 2 P C A 39 -11.893 -8.020 -12.683 1.00 33.89 P
ATOM 3 OP1 C A 39 -11.578 -9.227 -13.477 1.00 35.09 O
ATOM 4 OP2 C A 39 -11.795 -6.683 -13.307 1.00 35.19 O
ATOM 5 O5' C A 39 -13.361 -8.174 -12.068 1.00 34.06 O
ATOM 6 C5' C A 39 -13.679 -9.287 -11.240 1.00 33.67 C
ATOM 7 C4' C A 39 -14.922 -9.004 -10.420 1.00 33.71 C
ATOM 8 O4' C A 39 -14.658 -7.908 -9.508 1.00 34.27 O
ATOM 9 C3' C A 39 -16.116 -8.499 -11.215 1.00 33.54 C
ATOM 10 O3' C A 39 -16.775 -9.555 -11.908 1.00 33.48 O
ATOM 11 C2' C A 39 -16.950 -7.884 -10.095 1.00 32.66 C
ATOM 12 O2' C A 39 -17.606 -8.841 -9.284 1.00 32.47 O
ATOM 13 C1' C A 39 -15.858 -7.184 -9.291 1.00 32.72 C
ATOM 14 N1 C A 39 -15.659 -5.766 -9.709 1.00 32.60 N
ATOM 15 C2 C A 39 -16.540 -4.793 -9.226 1.00 32.30 C
ATOM 16 O2 C A 39 -17.449 -5.136 -8.467 1.00 33.05 O
ATOM 17 N3 C A 39 -16.376 -3.504 -9.606 1.00 31.68 N
ATOM 18 C4 C A 39 -15.384 -3.175 -10.431 1.00 31.78 C
ATOM 19 N4 C A 39 -15.268 -1.886 -10.772 1.00 31.35 N
ATOM 20 C5 C A 39 -14.470 -4.151 -10.936 1.00 32.19 C
ATOM 21 C6 C A 39 -14.647 -5.423 -10.557 1.00 31.46 C
ATOM 22 P C A 40 -17.365 -9.281 -13.372 1.00 34.15 P
ATOM 23 OP1 C A 40 -17.748 -10.582 -13.957 1.00 34.08 O
ATOM 24 OP2 C A 40 -16.426 -8.391 -14.087 1.00 33.88 O
ATOM 25 O5' C A 40 -18.692 -8.440 -13.070 1.00 34.63 O
TER
ATOM 1 O3' A B 37 -6.999 -3.283 -11.414 1.00 34.43 O
ATOM 2 P C B 38 -8.147 -3.759 -12.422 1.00 34.64 P
ATOM 3 OP1 C B 38 -7.506 -4.509 -13.525 1.00 34.45 O
ATOM 4 OP2 C B 38 -9.001 -2.587 -12.716 1.00 34.77 O
ATOM 5 O5' C B 38 -9.017 -4.776 -11.540 1.00 34.15 O
ATOM 6 C5' C B 38 -8.457 -6.002 -11.078 1.00 33.60 C
ATOM 7 C4' C B 38 -9.397 -6.692 -10.103 1.00 33.23 C
ATOM 8 O4' C B 38 -9.538 -5.894 -8.899 1.00 32.95 O
ATOM 9 C3' C B 38 -10.827 -6.872 -10.586 1.00 32.89 C
ATOM 10 O3' C B 38 -10.935 -8.028 -11.403 1.00 34.08 O
ATOM 11 C2' C B 38 -11.549 -7.052 -9.259 1.00 32.41 C
ATOM 12 O2' C B 38 -11.330 -8.334 -8.697 1.00 31.15 O
ATOM 13 C1' C B 38 -10.865 -5.986 -8.410 1.00 31.82 C
ATOM 14 N1 C B 38 -11.506 -4.625 -8.463 1.00 31.79 N
ATOM 15 C2 C B 38 -12.579 -4.321 -7.615 1.00 31.75 C
ATOM 16 O2 C B 38 -13.002 -5.183 -6.832 1.00 31.28 O
ATOM 17 N3 C B 38 -13.133 -3.082 -7.673 1.00 31.38 N
ATOM 18 C4 C B 38 -12.659 -2.168 -8.523 1.00 32.25 C
ATOM 19 N4 C B 38 -13.245 -0.964 -8.536 1.00 31.99 N
ATOM 20 C5 C B 38 -11.567 -2.454 -9.396 1.00 31.34 C
ATOM 21 C6 C B 38 -11.028 -3.678 -9.329 1.00 31.37 C
ATOM 22 P C B 39 -11.893 -8.020 -12.683 1.00 33.89 P
ATOM 23 OP1 C B 39 -11.578 -9.227 -13.477 1.00 35.09 O
ATOM 24 OP2 C B 39 -11.795 -6.683 -13.307 1.00 35.19 O
ATOM 25 O5' C B 39 -13.361 -8.174 -12.068 1.00 34.06 O
TER
Atoms:
C2: (-16.540,-4.793,-9.226)
OP1: (-11.578,-9.227,-13.477)
OP2: (-11.795,-6.683,-13.307)
C4: (-15.384,-3.175,-10.431)
O5': (-13.361,-8.174,-12.068)
C3': (-16.116,-8.499,-11.215)
C1': (-15.858,-7.184,-9.291)
O4': (-14.658,-7.908,-9.508)
C5': (-13.679,-9.287,-11.240)
P: (-11.893,-8.020,-12.683)
O2: (-17.449,-5.136,-8.467)
C4': (-14.922,-9.004,-10.420)
C2': (-16.950,-7.884,-10.095)
O2': (-17.606,-8.841,-9.284)
N1: (-15.659,-5.766,-9.709)
N3: (-16.376,-3.504,-9.606)
N4: (-15.268,-1.886,-10.772)
C6: (-14.647,-5.423,-10.557)
C5: (-14.470,-4.151,-10.936)
O3': (-16.775,-9.555,-11.908)
OP1: (-11.578,-9.227,-13.477)
OP2: (-11.795,-6.683,-13.307)
C4: (-15.384,-3.175,-10.431)
O5': (-13.361,-8.174,-12.068)
C3': (-16.116,-8.499,-11.215)
C1': (-15.858,-7.184,-9.291)
O4': (-14.658,-7.908,-9.508)
C5': (-13.679,-9.287,-11.240)
P: (-11.893,-8.020,-12.683)
O2: (-17.449,-5.136,-8.467)
C4': (-14.922,-9.004,-10.420)
C2': (-16.950,-7.884,-10.095)
O2': (-17.606,-8.841,-9.284)
N1: (-15.659,-5.766,-9.709)
N3: (-16.376,-3.504,-9.606)
N4: (-15.268,-1.886,-10.772)
C6: (-14.647,-5.423,-10.557)
C5: (-14.470,-4.151,-10.936)
O3': (-16.775,-9.555,-11.908)
C2: (-12.579,-4.321,-7.615)
OP1: (-7.506,-4.509,-13.525)
OP2: (-9.001,-2.587,-12.716)
C4: (-12.659,-2.168,-8.523)
O5': (-9.017,-4.776,-11.540)
C3': (-10.827,-6.872,-10.586)
C1': (-10.865,-5.986,-8.410)
O4': (-9.538,-5.894,-8.899)
C5': (-8.457,-6.002,-11.078)
P: (-8.147,-3.759,-12.422)
O2: (-13.002,-5.183,-6.832)
C4': (-9.397,-6.692,-10.103)
C2': (-11.549,-7.052,-9.259)
O2': (-11.330,-8.334,-8.697)
N1: (-11.506,-4.625,-8.463)
N3: (-13.133,-3.082,-7.673)
N4: (-13.245,-0.964,-8.536)
C6: (-11.028,-3.678,-9.329)
C5: (-11.567,-2.454,-9.396)
O3': (-10.935,-8.028,-11.403)
OP1: (-7.506,-4.509,-13.525)
OP2: (-9.001,-2.587,-12.716)
C4: (-12.659,-2.168,-8.523)
O5': (-9.017,-4.776,-11.540)
C3': (-10.827,-6.872,-10.586)
C1': (-10.865,-5.986,-8.410)
O4': (-9.538,-5.894,-8.899)
C5': (-8.457,-6.002,-11.078)
P: (-8.147,-3.759,-12.422)
O2: (-13.002,-5.183,-6.832)
C4': (-9.397,-6.692,-10.103)
C2': (-11.549,-7.052,-9.259)
O2': (-11.330,-8.334,-8.697)
N1: (-11.506,-4.625,-8.463)
N3: (-13.133,-3.082,-7.673)
N4: (-13.245,-0.964,-8.536)
C6: (-11.028,-3.678,-9.329)
C5: (-11.567,-2.454,-9.396)
O3': (-10.935,-8.028,-11.403)
Image (generated by PyMOL):