Doublet info:
Details
Nucleotide types:
CC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1KD1:A240:A239
Extra
PDB:
ATOM 1 O3' C A 239 81.196 133.389 4.483 1.00 63.19 O
ATOM 2 P C A 240 80.396 134.576 3.790 1.00 65.38 P
ATOM 3 OP1 C A 240 79.235 134.825 4.682 1.00 64.95 O
ATOM 4 OP2 C A 240 80.171 134.182 2.370 1.00 64.39 O
ATOM 5 O5' C A 240 81.426 135.801 3.808 1.00 66.14 O
ATOM 6 C5' C A 240 81.833 136.412 5.057 1.00 69.78 C
ATOM 7 C4' C A 240 82.691 137.639 4.816 1.00 71.85 C
ATOM 8 O4' C A 240 83.983 137.258 4.283 1.00 73.28 O
ATOM 9 C3' C A 240 82.158 138.654 3.823 1.00 73.07 C
ATOM 10 O3' C A 240 81.220 139.538 4.427 1.00 74.66 O
ATOM 11 C2' C A 240 83.420 139.401 3.423 1.00 73.56 C
ATOM 12 O2' C A 240 83.824 140.331 4.400 1.00 74.52 O
ATOM 13 C1' C A 240 84.446 138.269 3.402 1.00 74.63 C
ATOM 14 N1 C A 240 84.603 137.686 2.061 1.00 76.90 N
ATOM 15 C2 C A 240 85.434 138.329 1.136 1.00 77.79 C
ATOM 16 O2 C A 240 86.013 139.374 1.468 1.00 78.12 O
ATOM 17 N3 C A 240 85.582 137.798 -0.093 1.00 78.40 N
ATOM 18 C4 C A 240 84.949 136.670 -0.412 1.00 78.48 C
ATOM 19 N4 C A 240 85.138 136.181 -1.631 1.00 78.96 N
ATOM 20 C5 C A 240 84.097 135.994 0.507 1.00 78.42 C
ATOM 21 C6 C A 240 83.951 136.533 1.719 1.00 77.62 C
ATOM 22 P U A 241 79.948 140.041 3.585 1.00 76.94 P
ATOM 23 OP1 U A 241 79.066 140.887 4.431 1.00 76.49 O
ATOM 24 OP2 U A 241 79.408 138.808 2.970 1.00 76.54 O
ATOM 25 O5' U A 241 80.583 140.983 2.467 1.00 79.04 O
TER
ATOM 1 O3' C B 238 81.648 128.159 1.470 1.00 63.92 O
ATOM 2 P C B 239 80.940 129.606 1.358 1.00 63.74 P
ATOM 3 OP1 C B 239 79.591 129.481 1.971 1.00 61.86 O
ATOM 4 OP2 C B 239 81.059 130.137 -0.025 1.00 63.86 O
ATOM 5 O5' C B 239 81.850 130.545 2.275 1.00 63.73 O
ATOM 6 C5' C B 239 81.914 130.368 3.708 1.00 62.75 C
ATOM 7 C4' C B 239 82.693 131.497 4.344 1.00 62.34 C
ATOM 8 O4' C B 239 84.101 131.385 4.024 1.00 63.95 O
ATOM 9 C3' C B 239 82.317 132.870 3.836 1.00 62.80 C
ATOM 10 O3' C B 239 81.196 133.389 4.483 1.00 63.19 O
ATOM 11 C2' C B 239 83.550 133.706 4.114 1.00 63.15 C
ATOM 12 O2' C B 239 83.611 134.246 5.415 1.00 61.67 O
ATOM 13 C1' C B 239 84.655 132.688 3.846 1.00 64.86 C
ATOM 14 N1 C B 239 85.136 132.807 2.462 1.00 67.06 N
ATOM 15 C2 C B 239 86.186 133.693 2.185 1.00 68.15 C
ATOM 16 O2 C B 239 86.648 134.397 3.101 1.00 68.23 O
ATOM 17 N3 C B 239 86.668 133.764 0.924 1.00 70.07 N
ATOM 18 C4 C B 239 86.140 133.001 -0.038 1.00 70.41 C
ATOM 19 N4 C B 239 86.683 133.059 -1.253 1.00 70.91 N
ATOM 20 C5 C B 239 85.043 132.130 0.209 1.00 69.65 C
ATOM 21 C6 C B 239 84.579 132.061 1.458 1.00 68.09 C
ATOM 22 P C B 240 80.396 134.576 3.790 1.00 65.38 P
ATOM 23 OP1 C B 240 79.235 134.825 4.682 1.00 64.95 O
ATOM 24 OP2 C B 240 80.171 134.182 2.370 1.00 64.39 O
ATOM 25 O5' C B 240 81.426 135.801 3.808 1.00 66.14 O
TER
ATOM 2 P C A 240 80.396 134.576 3.790 1.00 65.38 P
ATOM 3 OP1 C A 240 79.235 134.825 4.682 1.00 64.95 O
ATOM 4 OP2 C A 240 80.171 134.182 2.370 1.00 64.39 O
ATOM 5 O5' C A 240 81.426 135.801 3.808 1.00 66.14 O
ATOM 6 C5' C A 240 81.833 136.412 5.057 1.00 69.78 C
ATOM 7 C4' C A 240 82.691 137.639 4.816 1.00 71.85 C
ATOM 8 O4' C A 240 83.983 137.258 4.283 1.00 73.28 O
ATOM 9 C3' C A 240 82.158 138.654 3.823 1.00 73.07 C
ATOM 10 O3' C A 240 81.220 139.538 4.427 1.00 74.66 O
ATOM 11 C2' C A 240 83.420 139.401 3.423 1.00 73.56 C
ATOM 12 O2' C A 240 83.824 140.331 4.400 1.00 74.52 O
ATOM 13 C1' C A 240 84.446 138.269 3.402 1.00 74.63 C
ATOM 14 N1 C A 240 84.603 137.686 2.061 1.00 76.90 N
ATOM 15 C2 C A 240 85.434 138.329 1.136 1.00 77.79 C
ATOM 16 O2 C A 240 86.013 139.374 1.468 1.00 78.12 O
ATOM 17 N3 C A 240 85.582 137.798 -0.093 1.00 78.40 N
ATOM 18 C4 C A 240 84.949 136.670 -0.412 1.00 78.48 C
ATOM 19 N4 C A 240 85.138 136.181 -1.631 1.00 78.96 N
ATOM 20 C5 C A 240 84.097 135.994 0.507 1.00 78.42 C
ATOM 21 C6 C A 240 83.951 136.533 1.719 1.00 77.62 C
ATOM 22 P U A 241 79.948 140.041 3.585 1.00 76.94 P
ATOM 23 OP1 U A 241 79.066 140.887 4.431 1.00 76.49 O
ATOM 24 OP2 U A 241 79.408 138.808 2.970 1.00 76.54 O
ATOM 25 O5' U A 241 80.583 140.983 2.467 1.00 79.04 O
TER
ATOM 1 O3' C B 238 81.648 128.159 1.470 1.00 63.92 O
ATOM 2 P C B 239 80.940 129.606 1.358 1.00 63.74 P
ATOM 3 OP1 C B 239 79.591 129.481 1.971 1.00 61.86 O
ATOM 4 OP2 C B 239 81.059 130.137 -0.025 1.00 63.86 O
ATOM 5 O5' C B 239 81.850 130.545 2.275 1.00 63.73 O
ATOM 6 C5' C B 239 81.914 130.368 3.708 1.00 62.75 C
ATOM 7 C4' C B 239 82.693 131.497 4.344 1.00 62.34 C
ATOM 8 O4' C B 239 84.101 131.385 4.024 1.00 63.95 O
ATOM 9 C3' C B 239 82.317 132.870 3.836 1.00 62.80 C
ATOM 10 O3' C B 239 81.196 133.389 4.483 1.00 63.19 O
ATOM 11 C2' C B 239 83.550 133.706 4.114 1.00 63.15 C
ATOM 12 O2' C B 239 83.611 134.246 5.415 1.00 61.67 O
ATOM 13 C1' C B 239 84.655 132.688 3.846 1.00 64.86 C
ATOM 14 N1 C B 239 85.136 132.807 2.462 1.00 67.06 N
ATOM 15 C2 C B 239 86.186 133.693 2.185 1.00 68.15 C
ATOM 16 O2 C B 239 86.648 134.397 3.101 1.00 68.23 O
ATOM 17 N3 C B 239 86.668 133.764 0.924 1.00 70.07 N
ATOM 18 C4 C B 239 86.140 133.001 -0.038 1.00 70.41 C
ATOM 19 N4 C B 239 86.683 133.059 -1.253 1.00 70.91 N
ATOM 20 C5 C B 239 85.043 132.130 0.209 1.00 69.65 C
ATOM 21 C6 C B 239 84.579 132.061 1.458 1.00 68.09 C
ATOM 22 P C B 240 80.396 134.576 3.790 1.00 65.38 P
ATOM 23 OP1 C B 240 79.235 134.825 4.682 1.00 64.95 O
ATOM 24 OP2 C B 240 80.171 134.182 2.370 1.00 64.39 O
ATOM 25 O5' C B 240 81.426 135.801 3.808 1.00 66.14 O
TER
Atoms:
C2: (85.434,138.329,1.136)
OP1: (79.235,134.825,4.682)
OP2: (80.171,134.182,2.370)
C4: (84.949,136.670,-0.412)
O5': (81.426,135.801,3.808)
C3': (82.158,138.654,3.823)
C1': (84.446,138.269,3.402)
O4': (83.983,137.258,4.283)
C5': (81.833,136.412,5.057)
P: (80.396,134.576,3.790)
O2: (86.013,139.374,1.468)
C4': (82.691,137.639,4.816)
C2': (83.420,139.401,3.423)
O2': (83.824,140.331,4.400)
N1: (84.603,137.686,2.061)
N3: (85.582,137.798,-0.093)
N4: (85.138,136.181,-1.631)
C6: (83.951,136.533,1.719)
C5: (84.097,135.994,0.507)
O3': (81.220,139.538,4.427)
OP1: (79.235,134.825,4.682)
OP2: (80.171,134.182,2.370)
C4: (84.949,136.670,-0.412)
O5': (81.426,135.801,3.808)
C3': (82.158,138.654,3.823)
C1': (84.446,138.269,3.402)
O4': (83.983,137.258,4.283)
C5': (81.833,136.412,5.057)
P: (80.396,134.576,3.790)
O2: (86.013,139.374,1.468)
C4': (82.691,137.639,4.816)
C2': (83.420,139.401,3.423)
O2': (83.824,140.331,4.400)
N1: (84.603,137.686,2.061)
N3: (85.582,137.798,-0.093)
N4: (85.138,136.181,-1.631)
C6: (83.951,136.533,1.719)
C5: (84.097,135.994,0.507)
O3': (81.220,139.538,4.427)
C2: (86.186,133.693,2.185)
OP1: (79.591,129.481,1.971)
OP2: (81.059,130.137,-0.025)
C4: (86.140,133.001,-0.038)
O5': (81.850,130.545,2.275)
C3': (82.317,132.870,3.836)
C1': (84.655,132.688,3.846)
O4': (84.101,131.385,4.024)
C5': (81.914,130.368,3.708)
P: (80.940,129.606,1.358)
O2: (86.648,134.397,3.101)
C4': (82.693,131.497,4.344)
C2': (83.550,133.706,4.114)
O2': (83.611,134.246,5.415)
N1: (85.136,132.807,2.462)
N3: (86.668,133.764,0.924)
N4: (86.683,133.059,-1.253)
C6: (84.579,132.061,1.458)
C5: (85.043,132.130,0.209)
O3': (81.196,133.389,4.483)
OP1: (79.591,129.481,1.971)
OP2: (81.059,130.137,-0.025)
C4: (86.140,133.001,-0.038)
O5': (81.850,130.545,2.275)
C3': (82.317,132.870,3.836)
C1': (84.655,132.688,3.846)
O4': (84.101,131.385,4.024)
C5': (81.914,130.368,3.708)
P: (80.940,129.606,1.358)
O2: (86.648,134.397,3.101)
C4': (82.693,131.497,4.344)
C2': (83.550,133.706,4.114)
O2': (83.611,134.246,5.415)
N1: (85.136,132.807,2.462)
N3: (86.668,133.764,0.924)
N4: (86.683,133.059,-1.253)
C6: (84.579,132.061,1.458)
C5: (85.043,132.130,0.209)
O3': (81.196,133.389,4.483)
Image (generated by PyMOL):