Doublet info:
Details
Nucleotide types:
CC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12463:12462
Extra
PDB:
ATOM 1 O3' C A2462 9.749 -82.613 54.215 1.00 64.21 O
ATOM 2 P C A2463 9.824 -82.063 55.710 1.00 65.49 P
ATOM 3 OP1 C A2463 9.094 -83.026 56.564 1.00 65.94 O
ATOM 4 OP2 C A2463 9.386 -80.619 55.679 1.00 64.91 O
ATOM 5 O5' C A2463 11.374 -82.135 56.042 1.00 65.29 O
ATOM 6 C5' C A2463 12.113 -83.320 55.838 1.00 65.77 C
ATOM 7 C4' C A2463 13.590 -83.050 55.906 1.00 65.46 C
ATOM 8 O4' C A2463 14.009 -82.259 54.760 1.00 65.18 O
ATOM 9 C3' C A2463 14.060 -82.229 57.080 1.00 64.91 C
ATOM 10 O3' C A2463 14.133 -82.973 58.278 1.00 65.13 O
ATOM 11 C2' C A2463 15.403 -81.762 56.575 1.00 64.61 C
ATOM 12 O2' C A2463 16.291 -82.868 56.517 1.00 65.03 O
ATOM 13 C1' C A2463 15.042 -81.390 55.145 1.00 64.63 C
ATOM 14 N1 C A2463 14.549 -79.988 55.035 1.00 64.07 N
ATOM 15 C2 C A2463 15.462 -78.897 54.940 1.00 63.51 C
ATOM 16 O2 C A2463 16.676 -79.122 54.962 1.00 63.48 O
ATOM 17 N3 C A2463 15.002 -77.619 54.844 1.00 63.02 N
ATOM 18 C4 C A2463 13.670 -77.408 54.823 1.00 63.08 C
ATOM 19 N4 C A2463 13.201 -76.158 54.723 1.00 62.62 N
ATOM 20 C5 C A2463 12.727 -78.483 54.913 1.00 63.64 C
ATOM 21 C6 C A2463 13.199 -79.731 55.018 1.00 64.11 C
ATOM 22 P U A2464 14.233 -82.217 59.698 1.00 66.36 P
ATOM 23 OP1 U A2464 14.042 -83.251 60.748 1.00 66.77 O
ATOM 24 OP2 U A2464 13.297 -81.035 59.653 1.00 65.93 O
ATOM 25 O5' U A2464 15.755 -81.706 59.701 1.00 65.97 O
TER
ATOM 1 O3' C B2461 5.828 -79.132 50.869 1.00 63.41 O
ATOM 2 P C B2462 6.394 -79.271 52.371 1.00 63.43 P
ATOM 3 OP1 C B2462 5.452 -80.133 53.123 1.00 63.85 O
ATOM 4 OP2 C B2462 6.648 -77.906 52.874 1.00 62.73 O
ATOM 5 O5' C B2462 7.766 -80.043 52.149 1.00 63.59 O
ATOM 6 C5' C B2462 7.770 -81.440 51.906 1.00 64.24 C
ATOM 7 C4' C B2462 9.169 -82.008 51.912 1.00 64.30 C
ATOM 8 O4' C B2462 9.939 -81.420 50.832 1.00 64.08 O
ATOM 9 C3' C B2462 10.010 -81.736 53.156 1.00 63.91 C
ATOM 10 O3' C B2462 9.749 -82.613 54.215 1.00 64.21 O
ATOM 11 C2' C B2462 11.419 -81.856 52.634 1.00 63.84 C
ATOM 12 O2' C B2462 11.782 -83.220 52.494 1.00 64.44 O
ATOM 13 C1' C B2462 11.274 -81.227 51.248 1.00 63.76 C
ATOM 14 N1 C B2462 11.537 -79.774 51.283 1.00 63.08 N
ATOM 15 C2 C B2462 12.874 -79.374 51.308 1.00 62.74 C
ATOM 16 O2 C B2462 13.727 -80.275 51.283 1.00 63.03 O
ATOM 17 N3 C B2462 13.184 -78.053 51.346 1.00 62.12 N
ATOM 18 C4 C B2462 12.179 -77.197 51.369 1.00 61.88 C
ATOM 19 N4 C B2462 12.499 -75.927 51.400 1.00 61.30 N
ATOM 20 C5 C B2462 10.815 -77.558 51.362 1.00 62.20 C
ATOM 21 C6 C B2462 10.529 -78.852 51.318 1.00 62.80 C
ATOM 22 P C B2463 9.824 -82.063 55.710 1.00 65.49 P
ATOM 23 OP1 C B2463 9.094 -83.026 56.564 1.00 65.94 O
ATOM 24 OP2 C B2463 9.386 -80.619 55.679 1.00 64.91 O
ATOM 25 O5' C B2463 11.374 -82.135 56.042 1.00 65.29 O
TER
ATOM 2 P C A2463 9.824 -82.063 55.710 1.00 65.49 P
ATOM 3 OP1 C A2463 9.094 -83.026 56.564 1.00 65.94 O
ATOM 4 OP2 C A2463 9.386 -80.619 55.679 1.00 64.91 O
ATOM 5 O5' C A2463 11.374 -82.135 56.042 1.00 65.29 O
ATOM 6 C5' C A2463 12.113 -83.320 55.838 1.00 65.77 C
ATOM 7 C4' C A2463 13.590 -83.050 55.906 1.00 65.46 C
ATOM 8 O4' C A2463 14.009 -82.259 54.760 1.00 65.18 O
ATOM 9 C3' C A2463 14.060 -82.229 57.080 1.00 64.91 C
ATOM 10 O3' C A2463 14.133 -82.973 58.278 1.00 65.13 O
ATOM 11 C2' C A2463 15.403 -81.762 56.575 1.00 64.61 C
ATOM 12 O2' C A2463 16.291 -82.868 56.517 1.00 65.03 O
ATOM 13 C1' C A2463 15.042 -81.390 55.145 1.00 64.63 C
ATOM 14 N1 C A2463 14.549 -79.988 55.035 1.00 64.07 N
ATOM 15 C2 C A2463 15.462 -78.897 54.940 1.00 63.51 C
ATOM 16 O2 C A2463 16.676 -79.122 54.962 1.00 63.48 O
ATOM 17 N3 C A2463 15.002 -77.619 54.844 1.00 63.02 N
ATOM 18 C4 C A2463 13.670 -77.408 54.823 1.00 63.08 C
ATOM 19 N4 C A2463 13.201 -76.158 54.723 1.00 62.62 N
ATOM 20 C5 C A2463 12.727 -78.483 54.913 1.00 63.64 C
ATOM 21 C6 C A2463 13.199 -79.731 55.018 1.00 64.11 C
ATOM 22 P U A2464 14.233 -82.217 59.698 1.00 66.36 P
ATOM 23 OP1 U A2464 14.042 -83.251 60.748 1.00 66.77 O
ATOM 24 OP2 U A2464 13.297 -81.035 59.653 1.00 65.93 O
ATOM 25 O5' U A2464 15.755 -81.706 59.701 1.00 65.97 O
TER
ATOM 1 O3' C B2461 5.828 -79.132 50.869 1.00 63.41 O
ATOM 2 P C B2462 6.394 -79.271 52.371 1.00 63.43 P
ATOM 3 OP1 C B2462 5.452 -80.133 53.123 1.00 63.85 O
ATOM 4 OP2 C B2462 6.648 -77.906 52.874 1.00 62.73 O
ATOM 5 O5' C B2462 7.766 -80.043 52.149 1.00 63.59 O
ATOM 6 C5' C B2462 7.770 -81.440 51.906 1.00 64.24 C
ATOM 7 C4' C B2462 9.169 -82.008 51.912 1.00 64.30 C
ATOM 8 O4' C B2462 9.939 -81.420 50.832 1.00 64.08 O
ATOM 9 C3' C B2462 10.010 -81.736 53.156 1.00 63.91 C
ATOM 10 O3' C B2462 9.749 -82.613 54.215 1.00 64.21 O
ATOM 11 C2' C B2462 11.419 -81.856 52.634 1.00 63.84 C
ATOM 12 O2' C B2462 11.782 -83.220 52.494 1.00 64.44 O
ATOM 13 C1' C B2462 11.274 -81.227 51.248 1.00 63.76 C
ATOM 14 N1 C B2462 11.537 -79.774 51.283 1.00 63.08 N
ATOM 15 C2 C B2462 12.874 -79.374 51.308 1.00 62.74 C
ATOM 16 O2 C B2462 13.727 -80.275 51.283 1.00 63.03 O
ATOM 17 N3 C B2462 13.184 -78.053 51.346 1.00 62.12 N
ATOM 18 C4 C B2462 12.179 -77.197 51.369 1.00 61.88 C
ATOM 19 N4 C B2462 12.499 -75.927 51.400 1.00 61.30 N
ATOM 20 C5 C B2462 10.815 -77.558 51.362 1.00 62.20 C
ATOM 21 C6 C B2462 10.529 -78.852 51.318 1.00 62.80 C
ATOM 22 P C B2463 9.824 -82.063 55.710 1.00 65.49 P
ATOM 23 OP1 C B2463 9.094 -83.026 56.564 1.00 65.94 O
ATOM 24 OP2 C B2463 9.386 -80.619 55.679 1.00 64.91 O
ATOM 25 O5' C B2463 11.374 -82.135 56.042 1.00 65.29 O
TER
Atoms:
C2: (15.462,-78.897,54.940)
OP1: (9.094,-83.026,56.564)
OP2: (9.386,-80.619,55.679)
C4: (13.670,-77.408,54.823)
O5': (11.374,-82.135,56.042)
C3': (14.060,-82.229,57.080)
C1': (15.042,-81.390,55.145)
O4': (14.009,-82.259,54.760)
C5': (12.113,-83.320,55.838)
P: (9.824,-82.063,55.710)
O2: (16.676,-79.122,54.962)
C4': (13.590,-83.050,55.906)
C2': (15.403,-81.762,56.575)
O2': (16.291,-82.868,56.517)
N1: (14.549,-79.988,55.035)
N3: (15.002,-77.619,54.844)
N4: (13.201,-76.158,54.723)
C6: (13.199,-79.731,55.018)
C5: (12.727,-78.483,54.913)
O3': (14.133,-82.973,58.278)
OP1: (9.094,-83.026,56.564)
OP2: (9.386,-80.619,55.679)
C4: (13.670,-77.408,54.823)
O5': (11.374,-82.135,56.042)
C3': (14.060,-82.229,57.080)
C1': (15.042,-81.390,55.145)
O4': (14.009,-82.259,54.760)
C5': (12.113,-83.320,55.838)
P: (9.824,-82.063,55.710)
O2: (16.676,-79.122,54.962)
C4': (13.590,-83.050,55.906)
C2': (15.403,-81.762,56.575)
O2': (16.291,-82.868,56.517)
N1: (14.549,-79.988,55.035)
N3: (15.002,-77.619,54.844)
N4: (13.201,-76.158,54.723)
C6: (13.199,-79.731,55.018)
C5: (12.727,-78.483,54.913)
O3': (14.133,-82.973,58.278)
C2: (12.874,-79.374,51.308)
OP1: (5.452,-80.133,53.123)
OP2: (6.648,-77.906,52.874)
C4: (12.179,-77.197,51.369)
O5': (7.766,-80.043,52.149)
C3': (10.010,-81.736,53.156)
C1': (11.274,-81.227,51.248)
O4': (9.939,-81.420,50.832)
C5': (7.770,-81.440,51.906)
P: (6.394,-79.271,52.371)
O2: (13.727,-80.275,51.283)
C4': (9.169,-82.008,51.912)
C2': (11.419,-81.856,52.634)
O2': (11.782,-83.220,52.494)
N1: (11.537,-79.774,51.283)
N3: (13.184,-78.053,51.346)
N4: (12.499,-75.927,51.400)
C6: (10.529,-78.852,51.318)
C5: (10.815,-77.558,51.362)
O3': (9.749,-82.613,54.215)
OP1: (5.452,-80.133,53.123)
OP2: (6.648,-77.906,52.874)
C4: (12.179,-77.197,51.369)
O5': (7.766,-80.043,52.149)
C3': (10.010,-81.736,53.156)
C1': (11.274,-81.227,51.248)
O4': (9.939,-81.420,50.832)
C5': (7.770,-81.440,51.906)
P: (6.394,-79.271,52.371)
O2: (13.727,-80.275,51.283)
C4': (9.169,-82.008,51.912)
C2': (11.419,-81.856,52.634)
O2': (11.782,-83.220,52.494)
N1: (11.537,-79.774,51.283)
N3: (13.184,-78.053,51.346)
N4: (12.499,-75.927,51.400)
C6: (10.529,-78.852,51.318)
C5: (10.815,-77.558,51.362)
O3': (9.749,-82.613,54.215)
Image (generated by PyMOL):