Doublet info:
Details
Nucleotide types:
UG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:0253:0234
Extra
PDB:
ATOM 1 O3' G A 252 91.447 119.844 3.430 1.00 49.35 O
ATOM 2 P U A 253 90.134 119.608 4.318 1.00 48.29 P
ATOM 3 OP1 U A 253 90.447 120.145 5.662 1.00 49.65 O
ATOM 4 OP2 U A 253 89.725 118.190 4.174 1.00 47.68 O
ATOM 5 O5' U A 253 89.028 120.531 3.638 1.00 47.80 O
ATOM 6 C5' U A 253 88.862 121.909 4.030 1.00 47.84 C
ATOM 7 C4' U A 253 88.451 122.739 2.839 1.00 48.93 C
ATOM 8 O4' U A 253 89.578 122.914 1.937 1.00 48.92 O
ATOM 9 C3' U A 253 87.379 122.093 1.983 1.00 49.06 C
ATOM 10 O3' U A 253 86.085 122.324 2.515 1.00 49.29 O
ATOM 11 C2' U A 253 87.599 122.747 0.626 1.00 48.38 C
ATOM 12 O2' U A 253 87.014 124.033 0.531 1.00 48.43 O
ATOM 13 C1' U A 253 89.128 122.854 0.593 1.00 47.35 C
ATOM 14 N1 U A 253 89.777 121.704 -0.055 1.00 47.48 N
ATOM 15 C2 U A 253 89.588 121.533 -1.419 1.00 47.53 C
ATOM 16 O2 U A 253 88.927 122.300 -2.104 1.00 50.16 O
ATOM 17 N3 U A 253 90.201 120.429 -1.953 1.00 46.20 N
ATOM 18 C4 U A 253 90.964 119.498 -1.287 1.00 47.54 C
ATOM 19 O4 U A 253 91.378 118.512 -1.898 1.00 48.23 O
ATOM 20 C5 U A 253 91.129 119.751 0.114 1.00 47.37 C
ATOM 21 C6 U A 253 90.546 120.816 0.667 1.00 46.14 C
ATOM 22 P G A 254 85.009 121.139 2.514 1.00 49.99 P
ATOM 23 OP1 G A 254 83.710 121.733 2.925 1.00 49.11 O
ATOM 24 OP2 G A 254 85.579 119.990 3.275 1.00 48.44 O
ATOM 25 O5' G A 254 84.894 120.711 0.983 1.00 51.32 O
TER
ATOM 1 O3' C B 233 92.669 112.126 -9.539 1.00 60.74 O
ATOM 2 P G B 234 94.151 112.746 -9.561 1.00 62.42 P
ATOM 3 OP1 G B 234 94.476 113.130 -10.965 1.00 64.66 O
ATOM 4 OP2 G B 234 95.046 111.805 -8.830 1.00 59.26 O
ATOM 5 O5' G B 234 93.972 114.077 -8.714 1.00 59.27 O
ATOM 6 C5' G B 234 92.805 114.899 -8.900 1.00 59.95 C
ATOM 7 C4' G B 234 92.855 116.077 -7.970 1.00 60.78 C
ATOM 8 O4' G B 234 92.644 115.613 -6.606 1.00 61.70 O
ATOM 9 C3' G B 234 94.194 116.800 -7.977 1.00 60.35 C
ATOM 10 O3' G B 234 94.001 118.193 -7.803 1.00 61.34 O
ATOM 11 C2' G B 234 94.918 116.173 -6.792 1.00 60.00 C
ATOM 12 O2' G B 234 95.926 116.989 -6.235 1.00 58.16 O
ATOM 13 C1' G B 234 93.766 115.945 -5.815 1.00 61.18 C
ATOM 14 N9 G B 234 94.023 114.849 -4.884 1.00 62.43 N
ATOM 15 C8 G B 234 94.601 113.633 -5.172 1.00 62.57 C
ATOM 16 N7 G B 234 94.793 112.894 -4.114 1.00 63.92 N
ATOM 17 C5 G B 234 94.295 113.658 -3.066 1.00 64.17 C
ATOM 18 C6 G B 234 94.257 113.391 -1.671 1.00 64.34 C
ATOM 19 O6 G B 234 94.690 112.406 -1.062 1.00 63.34 O
ATOM 20 N1 G B 234 93.649 114.428 -0.970 1.00 64.46 N
ATOM 21 C2 G B 234 93.151 115.577 -1.533 1.00 63.72 C
ATOM 22 N2 G B 234 92.585 116.449 -0.688 1.00 63.48 N
ATOM 23 N3 G B 234 93.200 115.848 -2.827 1.00 62.97 N
ATOM 24 C4 G B 234 93.784 114.853 -3.529 1.00 62.94 C
ATOM 25 P A B 235 94.568 119.207 -8.909 1.00 60.10 P
ATOM 26 OP1 A B 235 94.128 118.691 -10.230 1.00 61.24 O
ATOM 27 OP2 A B 235 96.020 119.406 -8.643 1.00 58.40 O
ATOM 28 O5' A B 235 93.781 120.558 -8.621 1.00 58.09 O
TER
ATOM 2 P U A 253 90.134 119.608 4.318 1.00 48.29 P
ATOM 3 OP1 U A 253 90.447 120.145 5.662 1.00 49.65 O
ATOM 4 OP2 U A 253 89.725 118.190 4.174 1.00 47.68 O
ATOM 5 O5' U A 253 89.028 120.531 3.638 1.00 47.80 O
ATOM 6 C5' U A 253 88.862 121.909 4.030 1.00 47.84 C
ATOM 7 C4' U A 253 88.451 122.739 2.839 1.00 48.93 C
ATOM 8 O4' U A 253 89.578 122.914 1.937 1.00 48.92 O
ATOM 9 C3' U A 253 87.379 122.093 1.983 1.00 49.06 C
ATOM 10 O3' U A 253 86.085 122.324 2.515 1.00 49.29 O
ATOM 11 C2' U A 253 87.599 122.747 0.626 1.00 48.38 C
ATOM 12 O2' U A 253 87.014 124.033 0.531 1.00 48.43 O
ATOM 13 C1' U A 253 89.128 122.854 0.593 1.00 47.35 C
ATOM 14 N1 U A 253 89.777 121.704 -0.055 1.00 47.48 N
ATOM 15 C2 U A 253 89.588 121.533 -1.419 1.00 47.53 C
ATOM 16 O2 U A 253 88.927 122.300 -2.104 1.00 50.16 O
ATOM 17 N3 U A 253 90.201 120.429 -1.953 1.00 46.20 N
ATOM 18 C4 U A 253 90.964 119.498 -1.287 1.00 47.54 C
ATOM 19 O4 U A 253 91.378 118.512 -1.898 1.00 48.23 O
ATOM 20 C5 U A 253 91.129 119.751 0.114 1.00 47.37 C
ATOM 21 C6 U A 253 90.546 120.816 0.667 1.00 46.14 C
ATOM 22 P G A 254 85.009 121.139 2.514 1.00 49.99 P
ATOM 23 OP1 G A 254 83.710 121.733 2.925 1.00 49.11 O
ATOM 24 OP2 G A 254 85.579 119.990 3.275 1.00 48.44 O
ATOM 25 O5' G A 254 84.894 120.711 0.983 1.00 51.32 O
TER
ATOM 1 O3' C B 233 92.669 112.126 -9.539 1.00 60.74 O
ATOM 2 P G B 234 94.151 112.746 -9.561 1.00 62.42 P
ATOM 3 OP1 G B 234 94.476 113.130 -10.965 1.00 64.66 O
ATOM 4 OP2 G B 234 95.046 111.805 -8.830 1.00 59.26 O
ATOM 5 O5' G B 234 93.972 114.077 -8.714 1.00 59.27 O
ATOM 6 C5' G B 234 92.805 114.899 -8.900 1.00 59.95 C
ATOM 7 C4' G B 234 92.855 116.077 -7.970 1.00 60.78 C
ATOM 8 O4' G B 234 92.644 115.613 -6.606 1.00 61.70 O
ATOM 9 C3' G B 234 94.194 116.800 -7.977 1.00 60.35 C
ATOM 10 O3' G B 234 94.001 118.193 -7.803 1.00 61.34 O
ATOM 11 C2' G B 234 94.918 116.173 -6.792 1.00 60.00 C
ATOM 12 O2' G B 234 95.926 116.989 -6.235 1.00 58.16 O
ATOM 13 C1' G B 234 93.766 115.945 -5.815 1.00 61.18 C
ATOM 14 N9 G B 234 94.023 114.849 -4.884 1.00 62.43 N
ATOM 15 C8 G B 234 94.601 113.633 -5.172 1.00 62.57 C
ATOM 16 N7 G B 234 94.793 112.894 -4.114 1.00 63.92 N
ATOM 17 C5 G B 234 94.295 113.658 -3.066 1.00 64.17 C
ATOM 18 C6 G B 234 94.257 113.391 -1.671 1.00 64.34 C
ATOM 19 O6 G B 234 94.690 112.406 -1.062 1.00 63.34 O
ATOM 20 N1 G B 234 93.649 114.428 -0.970 1.00 64.46 N
ATOM 21 C2 G B 234 93.151 115.577 -1.533 1.00 63.72 C
ATOM 22 N2 G B 234 92.585 116.449 -0.688 1.00 63.48 N
ATOM 23 N3 G B 234 93.200 115.848 -2.827 1.00 62.97 N
ATOM 24 C4 G B 234 93.784 114.853 -3.529 1.00 62.94 C
ATOM 25 P A B 235 94.568 119.207 -8.909 1.00 60.10 P
ATOM 26 OP1 A B 235 94.128 118.691 -10.230 1.00 61.24 O
ATOM 27 OP2 A B 235 96.020 119.406 -8.643 1.00 58.40 O
ATOM 28 O5' A B 235 93.781 120.558 -8.621 1.00 58.09 O
TER
Atoms:
C4: (90.964,119.498,-1.287)
N3: (90.201,120.429,-1.953)
OP1: (90.447,120.145,5.662)
OP2: (89.725,118.190,4.174)
C2: (89.588,121.533,-1.419)
C1': (89.128,122.854,0.593)
C3': (87.379,122.093,1.983)
O5': (89.028,120.531,3.638)
O4': (89.578,122.914,1.937)
C5': (88.862,121.909,4.030)
P: (90.134,119.608,4.318)
C4': (88.451,122.739,2.839)
C2': (87.599,122.747,0.626)
O2': (87.014,124.033,0.531)
N1: (89.777,121.704,-0.055)
O4: (91.378,118.512,-1.898)
O2: (88.927,122.300,-2.104)
C6: (90.546,120.816,0.667)
C5: (91.129,119.751,0.114)
O3': (86.085,122.324,2.515)
N3: (90.201,120.429,-1.953)
OP1: (90.447,120.145,5.662)
OP2: (89.725,118.190,4.174)
C2: (89.588,121.533,-1.419)
C1': (89.128,122.854,0.593)
C3': (87.379,122.093,1.983)
O5': (89.028,120.531,3.638)
O4': (89.578,122.914,1.937)
C5': (88.862,121.909,4.030)
P: (90.134,119.608,4.318)
C4': (88.451,122.739,2.839)
C2': (87.599,122.747,0.626)
O2': (87.014,124.033,0.531)
N1: (89.777,121.704,-0.055)
O4: (91.378,118.512,-1.898)
O2: (88.927,122.300,-2.104)
C6: (90.546,120.816,0.667)
C5: (91.129,119.751,0.114)
O3': (86.085,122.324,2.515)
OP1: (94.476,113.130,-10.965)
OP2: (95.046,111.805,-8.830)
C3': (94.194,116.800,-7.977)
C1': (93.766,115.945,-5.815)
C5': (92.805,114.899,-8.900)
O6: (94.690,112.406,-1.062)
O4': (92.644,115.613,-6.606)
C8: (94.601,113.633,-5.172)
C2: (93.151,115.577,-1.533)
C6: (94.257,113.391,-1.671)
C5: (94.295,113.658,-3.066)
C4: (93.784,114.853,-3.529)
P: (94.151,112.746,-9.561)
C4': (92.855,116.077,-7.970)
C2': (94.918,116.173,-6.792)
O2': (95.926,116.989,-6.235)
N1: (93.649,114.428,-0.970)
N2: (92.585,116.449,-0.688)
N3: (93.200,115.848,-2.827)
N7: (94.793,112.894,-4.114)
N9: (94.023,114.849,-4.884)
O5': (93.972,114.077,-8.714)
O3': (94.001,118.193,-7.803)
OP2: (95.046,111.805,-8.830)
C3': (94.194,116.800,-7.977)
C1': (93.766,115.945,-5.815)
C5': (92.805,114.899,-8.900)
O6: (94.690,112.406,-1.062)
O4': (92.644,115.613,-6.606)
C8: (94.601,113.633,-5.172)
C2: (93.151,115.577,-1.533)
C6: (94.257,113.391,-1.671)
C5: (94.295,113.658,-3.066)
C4: (93.784,114.853,-3.529)
P: (94.151,112.746,-9.561)
C4': (92.855,116.077,-7.970)
C2': (94.918,116.173,-6.792)
O2': (95.926,116.989,-6.235)
N1: (93.649,114.428,-0.970)
N2: (92.585,116.449,-0.688)
N3: (93.200,115.848,-2.827)
N7: (94.793,112.894,-4.114)
N9: (94.023,114.849,-4.884)
O5': (93.972,114.077,-8.714)
O3': (94.001,118.193,-7.803)
Image (generated by PyMOL):