Doublet info:
Details
Nucleotide types:
CC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1D4R:C6:C5
Extra
PDB:
ATOM 1 O3' C A 5 -11.160 4.212 18.575 1.00 83.50 O
ATOM 2 P C A 6 -10.912 3.385 19.925 1.00 80.89 P
ATOM 3 OP1 C A 6 -12.153 3.494 20.736 1.00 87.34 O
ATOM 4 OP2 C A 6 -9.617 3.813 20.507 1.00 77.38 O
ATOM 5 O5' C A 6 -10.797 1.885 19.414 1.00 73.90 O
ATOM 6 C5' C A 6 -11.834 1.308 18.630 1.00 65.32 C
ATOM 7 C4' C A 6 -11.318 0.103 17.893 1.00 61.36 C
ATOM 8 O4' C A 6 -10.374 0.530 16.875 1.00 57.28 O
ATOM 9 C3' C A 6 -10.505 -0.887 18.706 1.00 60.34 C
ATOM 10 O3' C A 6 -11.312 -1.739 19.512 1.00 64.20 O
ATOM 11 C2' C A 6 -9.779 -1.638 17.603 1.00 57.42 C
ATOM 12 O2' C A 6 -10.624 -2.527 16.908 1.00 54.48 O
ATOM 13 C1' C A 6 -9.398 -0.484 16.674 1.00 55.54 C
ATOM 14 N1 C A 6 -8.045 0.078 16.919 1.00 52.74 N
ATOM 15 C2 C A 6 -6.936 -0.568 16.359 1.00 51.12 C
ATOM 16 O2 C A 6 -7.117 -1.584 15.673 1.00 53.39 O
ATOM 17 N3 C A 6 -5.693 -0.068 16.580 1.00 47.42 N
ATOM 18 C4 C A 6 -5.538 1.027 17.324 1.00 52.76 C
ATOM 19 N4 C A 6 -4.299 1.483 17.517 1.00 55.84 N
ATOM 20 C5 C A 6 -6.648 1.704 17.905 1.00 54.79 C
ATOM 21 C6 C A 6 -7.870 1.202 17.678 1.00 42.75 C
ATOM 22 P U A 7 -10.739 -2.273 20.919 1.00 63.01 P
ATOM 23 OP1 U A 7 -11.787 -3.093 21.577 1.00 62.20 O
ATOM 24 OP2 U A 7 -10.163 -1.109 21.639 1.00 55.63 O
ATOM 25 O5' U A 7 -9.591 -3.290 20.492 1.00 63.89 O
TER
ATOM 1 O3' A B 4 -7.287 9.925 17.301 1.00 87.54 O
ATOM 2 P C B 5 -7.702 8.841 18.414 1.00 93.14 P
ATOM 3 OP1 C B 5 -8.157 9.608 19.604 1.00 95.86 O
ATOM 4 OP2 C B 5 -6.614 7.840 18.560 1.00 93.12 O
ATOM 5 O5' C B 5 -8.965 8.114 17.770 1.00 89.14 O
ATOM 6 C5' C B 5 -9.567 6.990 18.403 1.00 86.41 C
ATOM 7 C4' C B 5 -10.120 6.034 17.369 1.00 84.71 C
ATOM 8 O4' C B 5 -9.346 6.117 16.141 1.00 82.44 O
ATOM 9 C3' C B 5 -10.053 4.568 17.763 1.00 85.08 C
ATOM 10 O3' C B 5 -11.160 4.212 18.575 1.00 83.50 O
ATOM 11 C2' C B 5 -10.060 3.859 16.414 1.00 84.41 C
ATOM 12 O2' C B 5 -11.350 3.645 15.878 1.00 83.23 O
ATOM 13 C1' C B 5 -9.242 4.827 15.552 1.00 83.82 C
ATOM 14 N1 C B 5 -7.810 4.460 15.438 1.00 80.02 N
ATOM 15 C2 C B 5 -7.457 3.334 14.665 1.00 79.14 C
ATOM 16 O2 C B 5 -8.349 2.687 14.087 1.00 79.86 O
ATOM 17 N3 C B 5 -6.156 2.982 14.571 1.00 74.00 N
ATOM 18 C4 C B 5 -5.223 3.692 15.208 1.00 72.93 C
ATOM 19 N4 C B 5 -3.960 3.290 15.101 1.00 74.42 N
ATOM 20 C5 C B 5 -5.548 4.843 15.986 1.00 75.96 C
ATOM 21 C6 C B 5 -6.840 5.189 16.072 1.00 73.90 C
ATOM 22 P C B 6 -10.912 3.385 19.925 1.00 80.89 P
ATOM 23 OP1 C B 6 -12.153 3.494 20.736 1.00 87.34 O
ATOM 24 OP2 C B 6 -9.617 3.813 20.507 1.00 77.38 O
ATOM 25 O5' C B 6 -10.797 1.885 19.414 1.00 73.90 O
TER
ATOM 2 P C A 6 -10.912 3.385 19.925 1.00 80.89 P
ATOM 3 OP1 C A 6 -12.153 3.494 20.736 1.00 87.34 O
ATOM 4 OP2 C A 6 -9.617 3.813 20.507 1.00 77.38 O
ATOM 5 O5' C A 6 -10.797 1.885 19.414 1.00 73.90 O
ATOM 6 C5' C A 6 -11.834 1.308 18.630 1.00 65.32 C
ATOM 7 C4' C A 6 -11.318 0.103 17.893 1.00 61.36 C
ATOM 8 O4' C A 6 -10.374 0.530 16.875 1.00 57.28 O
ATOM 9 C3' C A 6 -10.505 -0.887 18.706 1.00 60.34 C
ATOM 10 O3' C A 6 -11.312 -1.739 19.512 1.00 64.20 O
ATOM 11 C2' C A 6 -9.779 -1.638 17.603 1.00 57.42 C
ATOM 12 O2' C A 6 -10.624 -2.527 16.908 1.00 54.48 O
ATOM 13 C1' C A 6 -9.398 -0.484 16.674 1.00 55.54 C
ATOM 14 N1 C A 6 -8.045 0.078 16.919 1.00 52.74 N
ATOM 15 C2 C A 6 -6.936 -0.568 16.359 1.00 51.12 C
ATOM 16 O2 C A 6 -7.117 -1.584 15.673 1.00 53.39 O
ATOM 17 N3 C A 6 -5.693 -0.068 16.580 1.00 47.42 N
ATOM 18 C4 C A 6 -5.538 1.027 17.324 1.00 52.76 C
ATOM 19 N4 C A 6 -4.299 1.483 17.517 1.00 55.84 N
ATOM 20 C5 C A 6 -6.648 1.704 17.905 1.00 54.79 C
ATOM 21 C6 C A 6 -7.870 1.202 17.678 1.00 42.75 C
ATOM 22 P U A 7 -10.739 -2.273 20.919 1.00 63.01 P
ATOM 23 OP1 U A 7 -11.787 -3.093 21.577 1.00 62.20 O
ATOM 24 OP2 U A 7 -10.163 -1.109 21.639 1.00 55.63 O
ATOM 25 O5' U A 7 -9.591 -3.290 20.492 1.00 63.89 O
TER
ATOM 1 O3' A B 4 -7.287 9.925 17.301 1.00 87.54 O
ATOM 2 P C B 5 -7.702 8.841 18.414 1.00 93.14 P
ATOM 3 OP1 C B 5 -8.157 9.608 19.604 1.00 95.86 O
ATOM 4 OP2 C B 5 -6.614 7.840 18.560 1.00 93.12 O
ATOM 5 O5' C B 5 -8.965 8.114 17.770 1.00 89.14 O
ATOM 6 C5' C B 5 -9.567 6.990 18.403 1.00 86.41 C
ATOM 7 C4' C B 5 -10.120 6.034 17.369 1.00 84.71 C
ATOM 8 O4' C B 5 -9.346 6.117 16.141 1.00 82.44 O
ATOM 9 C3' C B 5 -10.053 4.568 17.763 1.00 85.08 C
ATOM 10 O3' C B 5 -11.160 4.212 18.575 1.00 83.50 O
ATOM 11 C2' C B 5 -10.060 3.859 16.414 1.00 84.41 C
ATOM 12 O2' C B 5 -11.350 3.645 15.878 1.00 83.23 O
ATOM 13 C1' C B 5 -9.242 4.827 15.552 1.00 83.82 C
ATOM 14 N1 C B 5 -7.810 4.460 15.438 1.00 80.02 N
ATOM 15 C2 C B 5 -7.457 3.334 14.665 1.00 79.14 C
ATOM 16 O2 C B 5 -8.349 2.687 14.087 1.00 79.86 O
ATOM 17 N3 C B 5 -6.156 2.982 14.571 1.00 74.00 N
ATOM 18 C4 C B 5 -5.223 3.692 15.208 1.00 72.93 C
ATOM 19 N4 C B 5 -3.960 3.290 15.101 1.00 74.42 N
ATOM 20 C5 C B 5 -5.548 4.843 15.986 1.00 75.96 C
ATOM 21 C6 C B 5 -6.840 5.189 16.072 1.00 73.90 C
ATOM 22 P C B 6 -10.912 3.385 19.925 1.00 80.89 P
ATOM 23 OP1 C B 6 -12.153 3.494 20.736 1.00 87.34 O
ATOM 24 OP2 C B 6 -9.617 3.813 20.507 1.00 77.38 O
ATOM 25 O5' C B 6 -10.797 1.885 19.414 1.00 73.90 O
TER
Atoms:
C2: (-6.936,-0.568,16.359)
OP1: (-12.153,3.494,20.736)
OP2: (-9.617,3.813,20.507)
C4: (-5.538,1.027,17.324)
O5': (-10.797,1.885,19.414)
C3': (-10.505,-0.887,18.706)
C1': (-9.398,-0.484,16.674)
O4': (-10.374,0.530,16.875)
C5': (-11.834,1.308,18.630)
P: (-10.912,3.385,19.925)
O2: (-7.117,-1.584,15.673)
C4': (-11.318,0.103,17.893)
C2': (-9.779,-1.638,17.603)
O2': (-10.624,-2.527,16.908)
N1: (-8.045,0.078,16.919)
N3: (-5.693,-0.068,16.580)
N4: (-4.299,1.483,17.517)
C6: (-7.870,1.202,17.678)
C5: (-6.648,1.704,17.905)
O3': (-11.312,-1.739,19.512)
OP1: (-12.153,3.494,20.736)
OP2: (-9.617,3.813,20.507)
C4: (-5.538,1.027,17.324)
O5': (-10.797,1.885,19.414)
C3': (-10.505,-0.887,18.706)
C1': (-9.398,-0.484,16.674)
O4': (-10.374,0.530,16.875)
C5': (-11.834,1.308,18.630)
P: (-10.912,3.385,19.925)
O2: (-7.117,-1.584,15.673)
C4': (-11.318,0.103,17.893)
C2': (-9.779,-1.638,17.603)
O2': (-10.624,-2.527,16.908)
N1: (-8.045,0.078,16.919)
N3: (-5.693,-0.068,16.580)
N4: (-4.299,1.483,17.517)
C6: (-7.870,1.202,17.678)
C5: (-6.648,1.704,17.905)
O3': (-11.312,-1.739,19.512)
C2: (-7.457,3.334,14.665)
OP1: (-8.157,9.608,19.604)
OP2: (-6.614,7.840,18.560)
C4: (-5.223,3.692,15.208)
O5': (-8.965,8.114,17.770)
C3': (-10.053,4.568,17.763)
C1': (-9.242,4.827,15.552)
O4': (-9.346,6.117,16.141)
C5': (-9.567,6.990,18.403)
P: (-7.702,8.841,18.414)
O2: (-8.349,2.687,14.087)
C4': (-10.120,6.034,17.369)
C2': (-10.060,3.859,16.414)
O2': (-11.350,3.645,15.878)
N1: (-7.810,4.460,15.438)
N3: (-6.156,2.982,14.571)
N4: (-3.960,3.290,15.101)
C6: (-6.840,5.189,16.072)
C5: (-5.548,4.843,15.986)
O3': (-11.160,4.212,18.575)
OP1: (-8.157,9.608,19.604)
OP2: (-6.614,7.840,18.560)
C4: (-5.223,3.692,15.208)
O5': (-8.965,8.114,17.770)
C3': (-10.053,4.568,17.763)
C1': (-9.242,4.827,15.552)
O4': (-9.346,6.117,16.141)
C5': (-9.567,6.990,18.403)
P: (-7.702,8.841,18.414)
O2: (-8.349,2.687,14.087)
C4': (-10.120,6.034,17.369)
C2': (-10.060,3.859,16.414)
O2': (-11.350,3.645,15.878)
N1: (-7.810,4.460,15.438)
N3: (-6.156,2.982,14.571)
N4: (-3.960,3.290,15.101)
C6: (-6.840,5.189,16.072)
C5: (-5.548,4.843,15.986)
O3': (-11.160,4.212,18.575)
Image (generated by PyMOL):