Doublet info:
Details
Nucleotide types:
CC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:01222:01221
Extra
PDB:
ATOM 1 O3' C A1221 13.598 88.889 98.883 1.00 38.12 O
ATOM 2 P C A1222 12.815 89.037 97.487 1.00 39.08 P
ATOM 3 OP1 C A1222 12.822 87.714 96.802 1.00 34.80 O
ATOM 4 OP2 C A1222 13.367 90.225 96.782 1.00 39.61 O
ATOM 5 O5' C A1222 11.333 89.411 97.937 1.00 39.04 O
ATOM 6 C5' C A1222 10.633 88.624 98.918 1.00 37.98 C
ATOM 7 C4' C A1222 9.448 89.390 99.453 1.00 39.73 C
ATOM 8 O4' C A1222 9.894 90.529 100.234 1.00 40.51 O
ATOM 9 C3' C A1222 8.550 90.022 98.407 1.00 39.91 C
ATOM 10 O3' C A1222 7.687 89.073 97.808 1.00 40.20 O
ATOM 11 C2' C A1222 7.820 91.087 99.213 1.00 40.51 C
ATOM 12 O2' C A1222 6.775 90.570 100.020 1.00 42.16 O
ATOM 13 C1' C A1222 8.945 91.581 100.123 1.00 38.62 C
ATOM 14 N1 C A1222 9.619 92.786 99.617 1.00 38.58 N
ATOM 15 C2 C A1222 9.073 94.041 99.921 1.00 38.79 C
ATOM 16 O2 C A1222 8.043 94.102 100.599 1.00 39.70 O
ATOM 17 N3 C A1222 9.686 95.157 99.469 1.00 40.16 N
ATOM 18 C4 C A1222 10.801 95.061 98.743 1.00 38.85 C
ATOM 19 N4 C A1222 11.373 96.194 98.332 1.00 38.80 N
ATOM 20 C5 C A1222 11.380 93.799 98.412 1.00 38.01 C
ATOM 21 C6 C A1222 10.761 92.697 98.865 1.00 39.34 C
ATOM 22 P U A1223 7.379 89.180 96.239 1.00 41.80 P
ATOM 23 OP1 U A1223 6.535 88.017 95.853 1.00 40.85 O
ATOM 24 OP2 U A1223 8.668 89.396 95.550 1.00 40.64 O
ATOM 25 O5' U A1223 6.515 90.514 96.139 1.00 38.09 O
TER
ATOM 1 O3' A B1220 18.727 91.991 98.565 1.00 32.57 O
ATOM 2 P C B1221 17.733 91.542 97.390 1.00 32.67 P
ATOM 3 OP1 C B1221 18.415 90.466 96.623 1.00 30.37 O
ATOM 4 OP2 C B1221 17.258 92.748 96.685 1.00 34.45 O
ATOM 5 O5' C B1221 16.491 90.917 98.160 1.00 34.93 O
ATOM 6 C5' C B1221 16.650 89.804 99.064 1.00 34.65 C
ATOM 7 C4' C B1221 15.528 89.800 100.076 1.00 36.15 C
ATOM 8 O4' C B1221 15.695 90.900 101.012 1.00 36.79 O
ATOM 9 C3' C B1221 14.146 90.044 99.496 1.00 37.10 C
ATOM 10 O3' C B1221 13.598 88.889 98.883 1.00 38.12 O
ATOM 11 C2' C B1221 13.378 90.521 100.715 1.00 38.36 C
ATOM 12 O2' C B1221 13.092 89.467 101.611 1.00 38.89 O
ATOM 13 C1' C B1221 14.422 91.422 101.368 1.00 37.62 C
ATOM 14 N1 C B1221 14.343 92.830 100.923 1.00 39.03 N
ATOM 15 C2 C B1221 13.321 93.646 101.434 1.00 39.36 C
ATOM 16 O2 C B1221 12.466 93.149 102.169 1.00 40.94 O
ATOM 17 N3 C B1221 13.289 94.954 101.102 1.00 39.88 N
ATOM 18 C4 C B1221 14.204 95.455 100.271 1.00 39.68 C
ATOM 19 N4 C B1221 14.142 96.760 99.993 1.00 38.90 N
ATOM 20 C5 C B1221 15.225 94.643 99.695 1.00 39.46 C
ATOM 21 C6 C B1221 15.258 93.348 100.046 1.00 39.99 C
ATOM 22 P C B1222 12.815 89.037 97.487 1.00 39.08 P
ATOM 23 OP1 C B1222 12.822 87.714 96.802 1.00 34.80 O
ATOM 24 OP2 C B1222 13.367 90.225 96.782 1.00 39.61 O
ATOM 25 O5' C B1222 11.333 89.411 97.937 1.00 39.04 O
TER
ATOM 2 P C A1222 12.815 89.037 97.487 1.00 39.08 P
ATOM 3 OP1 C A1222 12.822 87.714 96.802 1.00 34.80 O
ATOM 4 OP2 C A1222 13.367 90.225 96.782 1.00 39.61 O
ATOM 5 O5' C A1222 11.333 89.411 97.937 1.00 39.04 O
ATOM 6 C5' C A1222 10.633 88.624 98.918 1.00 37.98 C
ATOM 7 C4' C A1222 9.448 89.390 99.453 1.00 39.73 C
ATOM 8 O4' C A1222 9.894 90.529 100.234 1.00 40.51 O
ATOM 9 C3' C A1222 8.550 90.022 98.407 1.00 39.91 C
ATOM 10 O3' C A1222 7.687 89.073 97.808 1.00 40.20 O
ATOM 11 C2' C A1222 7.820 91.087 99.213 1.00 40.51 C
ATOM 12 O2' C A1222 6.775 90.570 100.020 1.00 42.16 O
ATOM 13 C1' C A1222 8.945 91.581 100.123 1.00 38.62 C
ATOM 14 N1 C A1222 9.619 92.786 99.617 1.00 38.58 N
ATOM 15 C2 C A1222 9.073 94.041 99.921 1.00 38.79 C
ATOM 16 O2 C A1222 8.043 94.102 100.599 1.00 39.70 O
ATOM 17 N3 C A1222 9.686 95.157 99.469 1.00 40.16 N
ATOM 18 C4 C A1222 10.801 95.061 98.743 1.00 38.85 C
ATOM 19 N4 C A1222 11.373 96.194 98.332 1.00 38.80 N
ATOM 20 C5 C A1222 11.380 93.799 98.412 1.00 38.01 C
ATOM 21 C6 C A1222 10.761 92.697 98.865 1.00 39.34 C
ATOM 22 P U A1223 7.379 89.180 96.239 1.00 41.80 P
ATOM 23 OP1 U A1223 6.535 88.017 95.853 1.00 40.85 O
ATOM 24 OP2 U A1223 8.668 89.396 95.550 1.00 40.64 O
ATOM 25 O5' U A1223 6.515 90.514 96.139 1.00 38.09 O
TER
ATOM 1 O3' A B1220 18.727 91.991 98.565 1.00 32.57 O
ATOM 2 P C B1221 17.733 91.542 97.390 1.00 32.67 P
ATOM 3 OP1 C B1221 18.415 90.466 96.623 1.00 30.37 O
ATOM 4 OP2 C B1221 17.258 92.748 96.685 1.00 34.45 O
ATOM 5 O5' C B1221 16.491 90.917 98.160 1.00 34.93 O
ATOM 6 C5' C B1221 16.650 89.804 99.064 1.00 34.65 C
ATOM 7 C4' C B1221 15.528 89.800 100.076 1.00 36.15 C
ATOM 8 O4' C B1221 15.695 90.900 101.012 1.00 36.79 O
ATOM 9 C3' C B1221 14.146 90.044 99.496 1.00 37.10 C
ATOM 10 O3' C B1221 13.598 88.889 98.883 1.00 38.12 O
ATOM 11 C2' C B1221 13.378 90.521 100.715 1.00 38.36 C
ATOM 12 O2' C B1221 13.092 89.467 101.611 1.00 38.89 O
ATOM 13 C1' C B1221 14.422 91.422 101.368 1.00 37.62 C
ATOM 14 N1 C B1221 14.343 92.830 100.923 1.00 39.03 N
ATOM 15 C2 C B1221 13.321 93.646 101.434 1.00 39.36 C
ATOM 16 O2 C B1221 12.466 93.149 102.169 1.00 40.94 O
ATOM 17 N3 C B1221 13.289 94.954 101.102 1.00 39.88 N
ATOM 18 C4 C B1221 14.204 95.455 100.271 1.00 39.68 C
ATOM 19 N4 C B1221 14.142 96.760 99.993 1.00 38.90 N
ATOM 20 C5 C B1221 15.225 94.643 99.695 1.00 39.46 C
ATOM 21 C6 C B1221 15.258 93.348 100.046 1.00 39.99 C
ATOM 22 P C B1222 12.815 89.037 97.487 1.00 39.08 P
ATOM 23 OP1 C B1222 12.822 87.714 96.802 1.00 34.80 O
ATOM 24 OP2 C B1222 13.367 90.225 96.782 1.00 39.61 O
ATOM 25 O5' C B1222 11.333 89.411 97.937 1.00 39.04 O
TER
Atoms:
C2: (9.073,94.041,99.921)
OP1: (12.822,87.714,96.802)
OP2: (13.367,90.225,96.782)
C4: (10.801,95.061,98.743)
O5': (11.333,89.411,97.937)
C3': (8.550,90.022,98.407)
C1': (8.945,91.581,100.123)
O4': (9.894,90.529,100.234)
C5': (10.633,88.624,98.918)
P: (12.815,89.037,97.487)
O2: (8.043,94.102,100.599)
C4': (9.448,89.390,99.453)
C2': (7.820,91.087,99.213)
O2': (6.775,90.570,100.020)
N1: (9.619,92.786,99.617)
N3: (9.686,95.157,99.469)
N4: (11.373,96.194,98.332)
C6: (10.761,92.697,98.865)
C5: (11.380,93.799,98.412)
O3': (7.687,89.073,97.808)
OP1: (12.822,87.714,96.802)
OP2: (13.367,90.225,96.782)
C4: (10.801,95.061,98.743)
O5': (11.333,89.411,97.937)
C3': (8.550,90.022,98.407)
C1': (8.945,91.581,100.123)
O4': (9.894,90.529,100.234)
C5': (10.633,88.624,98.918)
P: (12.815,89.037,97.487)
O2: (8.043,94.102,100.599)
C4': (9.448,89.390,99.453)
C2': (7.820,91.087,99.213)
O2': (6.775,90.570,100.020)
N1: (9.619,92.786,99.617)
N3: (9.686,95.157,99.469)
N4: (11.373,96.194,98.332)
C6: (10.761,92.697,98.865)
C5: (11.380,93.799,98.412)
O3': (7.687,89.073,97.808)
C2: (13.321,93.646,101.434)
OP1: (18.415,90.466,96.623)
OP2: (17.258,92.748,96.685)
C4: (14.204,95.455,100.271)
O5': (16.491,90.917,98.160)
C3': (14.146,90.044,99.496)
C1': (14.422,91.422,101.368)
O4': (15.695,90.900,101.012)
C5': (16.650,89.804,99.064)
P: (17.733,91.542,97.390)
O2: (12.466,93.149,102.169)
C4': (15.528,89.800,100.076)
C2': (13.378,90.521,100.715)
O2': (13.092,89.467,101.611)
N1: (14.343,92.830,100.923)
N3: (13.289,94.954,101.102)
N4: (14.142,96.760,99.993)
C6: (15.258,93.348,100.046)
C5: (15.225,94.643,99.695)
O3': (13.598,88.889,98.883)
OP1: (18.415,90.466,96.623)
OP2: (17.258,92.748,96.685)
C4: (14.204,95.455,100.271)
O5': (16.491,90.917,98.160)
C3': (14.146,90.044,99.496)
C1': (14.422,91.422,101.368)
O4': (15.695,90.900,101.012)
C5': (16.650,89.804,99.064)
P: (17.733,91.542,97.390)
O2: (12.466,93.149,102.169)
C4': (15.528,89.800,100.076)
C2': (13.378,90.521,100.715)
O2': (13.092,89.467,101.611)
N1: (14.343,92.830,100.923)
N3: (13.289,94.954,101.102)
N4: (14.142,96.760,99.993)
C6: (15.258,93.348,100.046)
C5: (15.225,94.643,99.695)
O3': (13.598,88.889,98.883)
Image (generated by PyMOL):