ClaRNA

Doublet info:

Details

Nucleotide types: AG
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1YIJ:059:061

Extra

PDB:
ATOM 1 O3' U A 58 56.112 164.317 26.926 1.00 44.23 O
ATOM 2 P A A 59 55.385 164.672 28.316 1.00 45.73 P
ATOM 3 OP1 A A 59 54.084 165.315 28.020 1.00 48.14 O
ATOM 4 OP2 A A 59 56.365 165.383 29.187 1.00 46.77 O
ATOM 5 O5' A A 59 55.052 163.239 28.931 1.00 45.79 O
ATOM 6 C5' A A 59 56.089 162.281 29.084 1.00 44.37 C
ATOM 7 C4' A A 59 55.705 161.192 30.053 1.00 43.41 C
ATOM 8 O4' A A 59 56.983 160.667 30.505 1.00 44.44 O
ATOM 9 C3' A A 59 54.944 161.574 31.327 1.00 42.28 C
ATOM 10 O3' A A 59 53.551 161.244 31.229 1.00 42.31 O
ATOM 11 C2' A A 59 55.628 160.722 32.386 1.00 43.75 C
ATOM 12 O2' A A 59 55.200 159.381 32.326 1.00 42.12 O
ATOM 13 C1' A A 59 57.073 160.778 31.906 1.00 45.65 C
ATOM 14 N9 A A 59 57.765 162.031 32.236 1.00 47.42 N
ATOM 15 C8 A A 59 57.536 163.293 31.738 1.00 46.26 C
ATOM 16 N7 A A 59 58.308 164.214 32.260 1.00 47.56 N
ATOM 17 C5 A A 59 59.103 163.517 33.160 1.00 47.51 C
ATOM 18 C6 A A 59 60.125 163.924 34.041 1.00 47.48 C
ATOM 19 N6 A A 59 60.533 165.186 34.177 1.00 46.62 N
ATOM 20 N1 A A 59 60.720 162.975 34.792 1.00 48.44 N
ATOM 21 C2 A A 59 60.310 161.712 34.670 1.00 48.09 C
ATOM 22 N3 A A 59 59.363 161.205 33.887 1.00 48.74 N
ATOM 23 C4 A A 59 58.788 162.171 33.148 1.00 48.45 C
ATOM 24 P A A 60 52.551 161.513 32.474 1.00 42.03 P
ATOM 25 OP1 A A 60 51.845 162.804 32.271 1.00 43.71 O
ATOM 26 OP2 A A 60 53.292 161.294 33.731 1.00 44.97 O
ATOM 27 O5' A A 60 51.470 160.346 32.356 1.00 43.18 O
TER

ATOM 1 O3' A B 60 47.053 158.440 32.089 1.00 52.96 O
ATOM 2 P G B 61 46.507 158.655 30.596 1.00 56.50 P
ATOM 3 OP1 G B 61 45.924 160.023 30.487 1.00 55.68 O
ATOM 4 OP2 G B 61 45.673 157.466 30.249 1.00 56.01 O
ATOM 5 O5' G B 61 47.842 158.606 29.737 1.00 54.96 O
ATOM 6 C5' G B 61 47.920 159.212 28.449 1.00 53.12 C
ATOM 7 C4' G B 61 49.129 160.105 28.386 1.00 53.00 C
ATOM 8 O4' G B 61 50.212 159.514 29.153 1.00 50.98 O
ATOM 9 C3' G B 61 49.693 160.322 26.994 1.00 52.61 C
ATOM 10 O3' G B 61 48.989 161.365 26.315 1.00 52.40 O
ATOM 11 C2' G B 61 51.151 160.645 27.301 1.00 51.33 C
ATOM 12 O2' G B 61 51.298 161.960 27.798 1.00 53.17 O
ATOM 13 C1' G B 61 51.432 159.680 28.458 1.00 48.58 C
ATOM 14 N9 G B 61 51.892 158.352 28.063 1.00 45.70 N
ATOM 15 C8 G B 61 51.225 157.163 28.256 1.00 44.93 C
ATOM 16 N7 G B 61 51.882 156.127 27.810 1.00 43.33 N
ATOM 17 C5 G B 61 53.051 156.661 27.284 1.00 43.80 C
ATOM 18 C6 G B 61 54.149 156.022 26.655 1.00 43.89 C
ATOM 19 O6 G B 61 54.311 154.820 26.418 1.00 46.24 O
ATOM 20 N1 G B 61 55.125 156.934 26.286 1.00 43.95 N
ATOM 21 C2 G B 61 55.056 158.287 26.488 1.00 44.15 C
ATOM 22 N2 G B 61 56.107 159.001 26.059 1.00 42.50 N
ATOM 23 N3 G B 61 54.035 158.899 27.065 1.00 44.23 N
ATOM 24 C4 G B 61 53.075 158.032 27.436 1.00 44.01 C
ATOM 25 P C B 62 48.491 161.148 24.795 1.00 53.06 P
ATOM 26 OP1 C B 62 47.628 162.313 24.474 1.00 52.29 O
ATOM 27 OP2 C B 62 47.960 159.773 24.603 1.00 51.85 O
ATOM 28 O5' C B 62 49.827 161.260 23.939 1.00 52.75 O
TER

Atoms:
OP1: (54.084,165.315,28.020)
OP2: (56.365,165.383,29.187)
C3': (54.944,161.574,31.327)
C1': (57.073,160.778,31.906)
C5': (56.089,162.281,29.084)
O4': (56.983,160.667,30.505)
C8: (57.536,163.293,31.738)
O2': (55.200,159.381,32.326)
C6: (60.125,163.924,34.041)
C5: (59.103,163.517,33.160)
C4: (58.788,162.171,33.148)
P: (55.385,164.672,28.316)
C4': (55.705,161.192,30.053)
C2': (55.628,160.722,32.386)
C2: (60.310,161.712,34.670)
N1: (60.720,162.975,34.792)
N3: (59.363,161.205,33.887)
N6: (60.533,165.186,34.177)
N7: (58.308,164.214,32.260)
N9: (57.765,162.031,32.236)
O5': (55.052,163.239,28.931)
O3': (53.551,161.244,31.229)
OP1: (45.924,160.023,30.487)
OP2: (45.673,157.466,30.249)
C3': (49.693,160.322,26.994)
C1': (51.432,159.680,28.458)
C5': (47.920,159.212,28.449)
O6: (54.311,154.820,26.418)
O4': (50.212,159.514,29.153)
C8: (51.225,157.163,28.256)
C2: (55.056,158.287,26.488)
C6: (54.149,156.022,26.655)
C5: (53.051,156.661,27.284)
C4: (53.075,158.032,27.436)
P: (46.507,158.655,30.596)
C4': (49.129,160.105,28.386)
C2': (51.151,160.645,27.301)
O2': (51.298,161.960,27.798)
N1: (55.125,156.934,26.286)
N2: (56.107,159.001,26.059)
N3: (54.035,158.899,27.065)
N7: (51.882,156.127,27.810)
N9: (51.892,158.352,28.063)
O5': (47.842,158.606,29.737)
O3': (48.989,161.365,26.315)
Image (generated by PyMOL):
PyMOL image
show in jmol