ClaRNA

Doublet info:

Details

Nucleotide types: AG
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1YJ9:059:061

Extra

PDB:
ATOM 1 O3' U A 58 56.499 164.419 27.109 1.00 54.49 O
ATOM 2 P A A 59 55.697 164.799 28.443 1.00 55.61 P
ATOM 3 OP1 A A 59 54.407 165.405 28.042 1.00 58.84 O
ATOM 4 OP2 A A 59 56.606 165.561 29.338 1.00 54.06 O
ATOM 5 O5' A A 59 55.345 163.381 29.074 1.00 55.75 O
ATOM 6 C5' A A 59 56.369 162.413 29.258 1.00 55.94 C
ATOM 7 C4' A A 59 55.950 161.347 30.239 1.00 56.20 C
ATOM 8 O4' A A 59 57.203 160.778 30.713 1.00 56.65 O
ATOM 9 C3' A A 59 55.192 161.792 31.499 1.00 55.56 C
ATOM 10 O3' A A 59 53.787 161.491 31.404 1.00 56.45 O
ATOM 11 C2' A A 59 55.851 160.963 32.587 1.00 56.45 C
ATOM 12 O2' A A 59 55.338 159.646 32.562 1.00 56.12 O
ATOM 13 C1' A A 59 57.302 160.958 32.107 1.00 57.57 C
ATOM 14 N9 A A 59 58.035 162.208 32.363 1.00 59.27 N
ATOM 15 C8 A A 59 57.896 163.423 31.731 1.00 57.69 C
ATOM 16 N7 A A 59 58.697 164.354 32.188 1.00 58.57 N
ATOM 17 C5 A A 59 59.414 163.716 33.192 1.00 59.49 C
ATOM 18 C6 A A 59 60.426 164.161 34.066 1.00 58.96 C
ATOM 19 N6 A A 59 60.908 165.403 34.077 1.00 59.01 N
ATOM 20 N1 A A 59 60.932 163.272 34.942 1.00 59.52 N
ATOM 21 C2 A A 59 60.454 162.028 34.940 1.00 59.89 C
ATOM 22 N3 A A 59 59.511 161.489 34.175 1.00 60.66 N
ATOM 23 C4 A A 59 59.022 162.395 33.309 1.00 60.20 C
ATOM 24 P A A 60 52.806 161.685 32.684 1.00 55.16 P
ATOM 25 OP1 A A 60 52.094 162.977 32.559 1.00 55.36 O
ATOM 26 OP2 A A 60 53.549 161.390 33.923 1.00 57.10 O
ATOM 27 O5' A A 60 51.729 160.523 32.518 1.00 55.67 O
TER

ATOM 1 O3' A B 60 47.375 158.532 32.387 1.00 65.42 O
ATOM 2 P G B 61 46.880 158.794 30.878 1.00 67.38 P
ATOM 3 OP1 G B 61 46.258 160.152 30.790 1.00 65.84 O
ATOM 4 OP2 G B 61 46.105 157.594 30.444 1.00 67.24 O
ATOM 5 O5' G B 61 48.244 158.823 30.067 1.00 64.71 O
ATOM 6 C5' G B 61 48.303 159.322 28.738 1.00 62.88 C
ATOM 7 C4' G B 61 49.518 160.189 28.588 1.00 62.50 C
ATOM 8 O4' G B 61 50.624 159.583 29.303 1.00 58.94 O
ATOM 9 C3' G B 61 50.019 160.357 27.166 1.00 64.01 C
ATOM 10 O3' G B 61 49.277 161.361 26.457 1.00 67.20 O
ATOM 11 C2' G B 61 51.492 160.682 27.392 1.00 60.60 C
ATOM 12 O2' G B 61 51.700 162.013 27.816 1.00 62.40 O
ATOM 13 C1' G B 61 51.818 159.765 28.572 1.00 56.47 C
ATOM 14 N9 G B 61 52.300 158.448 28.181 1.00 52.75 N
ATOM 15 C8 G B 61 51.678 157.242 28.390 1.00 51.55 C
ATOM 16 N7 G B 61 52.370 156.228 27.950 1.00 50.74 N
ATOM 17 C5 G B 61 53.516 156.800 27.415 1.00 50.44 C
ATOM 18 C6 G B 61 54.639 156.202 26.793 1.00 49.59 C
ATOM 19 O6 G B 61 54.862 155.006 26.592 1.00 51.45 O
ATOM 20 N1 G B 61 55.563 157.150 26.389 1.00 48.17 N
ATOM 21 C2 G B 61 55.431 158.500 26.558 1.00 50.40 C
ATOM 22 N2 G B 61 56.434 159.261 26.091 1.00 52.07 N
ATOM 23 N3 G B 61 54.395 159.072 27.139 1.00 51.34 N
ATOM 24 C4 G B 61 53.482 158.168 27.542 1.00 51.53 C
ATOM 25 P C B 62 48.874 161.118 24.911 1.00 69.41 P
ATOM 26 OP1 C B 62 47.914 162.193 24.529 1.00 68.35 O
ATOM 27 OP2 C B 62 48.493 159.693 24.713 1.00 67.76 O
ATOM 28 O5' C B 62 50.245 161.338 24.133 1.00 67.86 O
TER

Atoms:
OP1: (54.407,165.405,28.042)
OP2: (56.606,165.561,29.338)
C3': (55.192,161.792,31.499)
C1': (57.302,160.958,32.107)
C5': (56.369,162.413,29.258)
O4': (57.203,160.778,30.713)
C8: (57.896,163.423,31.731)
O2': (55.338,159.646,32.562)
C6: (60.426,164.161,34.066)
C5: (59.414,163.716,33.192)
C4: (59.022,162.395,33.309)
P: (55.697,164.799,28.443)
C4': (55.950,161.347,30.239)
C2': (55.851,160.963,32.587)
C2: (60.454,162.028,34.940)
N1: (60.932,163.272,34.942)
N3: (59.511,161.489,34.175)
N6: (60.908,165.403,34.077)
N7: (58.697,164.354,32.188)
N9: (58.035,162.208,32.363)
O5': (55.345,163.381,29.074)
O3': (53.787,161.491,31.404)
OP1: (46.258,160.152,30.790)
OP2: (46.105,157.594,30.444)
C3': (50.019,160.357,27.166)
C1': (51.818,159.765,28.572)
C5': (48.303,159.322,28.738)
O6: (54.862,155.006,26.592)
O4': (50.624,159.583,29.303)
C8: (51.678,157.242,28.390)
C2: (55.431,158.500,26.558)
C6: (54.639,156.202,26.793)
C5: (53.516,156.800,27.415)
C4: (53.482,158.168,27.542)
P: (46.880,158.794,30.878)
C4': (49.518,160.189,28.588)
C2': (51.492,160.682,27.392)
O2': (51.700,162.013,27.816)
N1: (55.563,157.150,26.389)
N2: (56.434,159.261,26.091)
N3: (54.395,159.072,27.139)
N7: (52.370,156.228,27.950)
N9: (52.300,158.448,28.181)
O5': (48.244,158.823,30.067)
O3': (49.277,161.361,26.457)
Image (generated by PyMOL):
PyMOL image
show in jmol