Doublet info:
Details
Nucleotide types:
UA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:11499:11501
Extra
PDB:
ATOM 1 O3' U A1498 17.671 -5.100 138.378 1.00122.46 O
ATOM 2 P U A1499 16.597 -6.058 137.641 1.00161.82 P
ATOM 3 OP1 U A1499 15.961 -5.263 136.553 1.00161.43 O
ATOM 4 OP2 U A1499 15.725 -6.632 138.706 1.00162.03 O
ATOM 5 O5' U A1499 17.516 -7.211 137.010 1.00161.52 O
ATOM 6 C5' U A1499 17.138 -7.867 135.804 1.00160.88 C
ATOM 7 C4' U A1499 18.254 -8.720 135.226 1.00160.68 C
ATOM 8 O4' U A1499 19.484 -7.975 135.135 1.00160.92 O
ATOM 9 C3' U A1499 18.655 -9.964 136.003 1.00160.84 C
ATOM 10 O3' U A1499 17.735 -11.029 135.828 1.00160.49 O
ATOM 11 C2' U A1499 20.050 -10.272 135.443 1.00160.77 C
ATOM 12 O2' U A1499 19.960 -11.108 134.302 1.00160.17 O
ATOM 13 C1' U A1499 20.547 -8.891 134.997 1.00160.87 C
ATOM 14 N1 U A1499 21.723 -8.434 135.766 1.00161.41 N
ATOM 15 C2 U A1499 22.735 -7.948 134.963 1.00161.31 C
ATOM 16 O2 U A1499 22.618 -7.856 133.757 1.00160.83 O
ATOM 17 N3 U A1499 23.869 -7.532 135.602 1.00161.79 N
ATOM 18 C4 U A1499 24.106 -7.588 136.950 1.00162.35 C
ATOM 19 O4 U A1499 25.191 -7.174 137.366 1.00162.74 O
ATOM 20 C5 U A1499 23.022 -8.142 137.718 1.00162.42 C
ATOM 21 C6 U A1499 21.889 -8.550 137.124 1.00161.96 C
ATOM 22 P C A1500 17.749 -12.313 136.802 1.00137.24 P
ATOM 23 OP1 C A1500 16.937 -13.355 136.140 1.00136.71 O
ATOM 24 OP2 C A1500 17.346 -11.855 138.154 1.00137.79 O
ATOM 25 O5' C A1500 19.281 -12.754 136.810 1.00137.39 O
TER
ATOM 1 O3' C B1500 21.540 -14.222 140.421 1.00138.93 O
ATOM 2 P A B1501 20.879 -13.348 141.627 1.00 87.94 P
ATOM 3 OP1 A B1501 19.778 -14.158 142.248 1.00 87.92 O
ATOM 4 OP2 A B1501 20.571 -11.981 141.095 1.00 87.89 O
ATOM 5 O5' A B1501 22.119 -13.276 142.622 1.00 88.53 O
ATOM 6 C5' A B1501 23.098 -14.324 142.598 1.00 88.50 C
ATOM 7 C4' A B1501 24.399 -13.922 143.239 1.00 89.01 C
ATOM 8 O4' A B1501 25.163 -13.107 142.315 1.00 88.87 O
ATOM 9 C3' A B1501 24.276 -13.109 144.525 1.00 89.64 C
ATOM 10 O3' A B1501 25.361 -13.444 145.400 1.00 90.10 O
ATOM 11 C2' A B1501 24.458 -11.685 144.017 1.00 89.67 C
ATOM 12 O2' A B1501 24.857 -10.760 145.009 1.00 90.28 O
ATOM 13 C1' A B1501 25.538 -11.914 142.961 1.00 89.36 C
ATOM 14 N9 A B1501 25.674 -10.874 141.940 1.00 89.13 N
ATOM 15 C8 A B1501 24.850 -10.565 140.895 1.00 88.63 C
ATOM 16 N7 A B1501 25.310 -9.622 140.106 1.00 88.53 N
ATOM 17 C5 A B1501 26.542 -9.319 140.651 1.00 88.97 C
ATOM 18 C6 A B1501 27.532 -8.402 140.279 1.00 89.11 C
ATOM 19 N6 A B1501 27.437 -7.578 139.231 1.00 88.80 N
ATOM 20 N1 A B1501 28.639 -8.358 141.043 1.00 89.59 N
ATOM 21 C2 A B1501 28.728 -9.177 142.095 1.00 89.90 C
ATOM 22 N3 A B1501 27.867 -10.071 142.544 1.00 89.82 N
ATOM 23 C4 A B1501 26.783 -10.091 141.767 1.00 89.34 C
ATOM 24 P A B1502 25.288 -14.756 146.336 1.00 62.82 P
ATOM 25 OP1 A B1502 26.584 -15.452 146.227 1.00 62.86 O
ATOM 26 OP2 A B1502 24.043 -15.497 145.978 1.00 62.38 O
ATOM 27 O5' A B1502 25.149 -14.142 147.782 1.00 63.49 O
TER
ATOM 2 P U A1499 16.597 -6.058 137.641 1.00161.82 P
ATOM 3 OP1 U A1499 15.961 -5.263 136.553 1.00161.43 O
ATOM 4 OP2 U A1499 15.725 -6.632 138.706 1.00162.03 O
ATOM 5 O5' U A1499 17.516 -7.211 137.010 1.00161.52 O
ATOM 6 C5' U A1499 17.138 -7.867 135.804 1.00160.88 C
ATOM 7 C4' U A1499 18.254 -8.720 135.226 1.00160.68 C
ATOM 8 O4' U A1499 19.484 -7.975 135.135 1.00160.92 O
ATOM 9 C3' U A1499 18.655 -9.964 136.003 1.00160.84 C
ATOM 10 O3' U A1499 17.735 -11.029 135.828 1.00160.49 O
ATOM 11 C2' U A1499 20.050 -10.272 135.443 1.00160.77 C
ATOM 12 O2' U A1499 19.960 -11.108 134.302 1.00160.17 O
ATOM 13 C1' U A1499 20.547 -8.891 134.997 1.00160.87 C
ATOM 14 N1 U A1499 21.723 -8.434 135.766 1.00161.41 N
ATOM 15 C2 U A1499 22.735 -7.948 134.963 1.00161.31 C
ATOM 16 O2 U A1499 22.618 -7.856 133.757 1.00160.83 O
ATOM 17 N3 U A1499 23.869 -7.532 135.602 1.00161.79 N
ATOM 18 C4 U A1499 24.106 -7.588 136.950 1.00162.35 C
ATOM 19 O4 U A1499 25.191 -7.174 137.366 1.00162.74 O
ATOM 20 C5 U A1499 23.022 -8.142 137.718 1.00162.42 C
ATOM 21 C6 U A1499 21.889 -8.550 137.124 1.00161.96 C
ATOM 22 P C A1500 17.749 -12.313 136.802 1.00137.24 P
ATOM 23 OP1 C A1500 16.937 -13.355 136.140 1.00136.71 O
ATOM 24 OP2 C A1500 17.346 -11.855 138.154 1.00137.79 O
ATOM 25 O5' C A1500 19.281 -12.754 136.810 1.00137.39 O
TER
ATOM 1 O3' C B1500 21.540 -14.222 140.421 1.00138.93 O
ATOM 2 P A B1501 20.879 -13.348 141.627 1.00 87.94 P
ATOM 3 OP1 A B1501 19.778 -14.158 142.248 1.00 87.92 O
ATOM 4 OP2 A B1501 20.571 -11.981 141.095 1.00 87.89 O
ATOM 5 O5' A B1501 22.119 -13.276 142.622 1.00 88.53 O
ATOM 6 C5' A B1501 23.098 -14.324 142.598 1.00 88.50 C
ATOM 7 C4' A B1501 24.399 -13.922 143.239 1.00 89.01 C
ATOM 8 O4' A B1501 25.163 -13.107 142.315 1.00 88.87 O
ATOM 9 C3' A B1501 24.276 -13.109 144.525 1.00 89.64 C
ATOM 10 O3' A B1501 25.361 -13.444 145.400 1.00 90.10 O
ATOM 11 C2' A B1501 24.458 -11.685 144.017 1.00 89.67 C
ATOM 12 O2' A B1501 24.857 -10.760 145.009 1.00 90.28 O
ATOM 13 C1' A B1501 25.538 -11.914 142.961 1.00 89.36 C
ATOM 14 N9 A B1501 25.674 -10.874 141.940 1.00 89.13 N
ATOM 15 C8 A B1501 24.850 -10.565 140.895 1.00 88.63 C
ATOM 16 N7 A B1501 25.310 -9.622 140.106 1.00 88.53 N
ATOM 17 C5 A B1501 26.542 -9.319 140.651 1.00 88.97 C
ATOM 18 C6 A B1501 27.532 -8.402 140.279 1.00 89.11 C
ATOM 19 N6 A B1501 27.437 -7.578 139.231 1.00 88.80 N
ATOM 20 N1 A B1501 28.639 -8.358 141.043 1.00 89.59 N
ATOM 21 C2 A B1501 28.728 -9.177 142.095 1.00 89.90 C
ATOM 22 N3 A B1501 27.867 -10.071 142.544 1.00 89.82 N
ATOM 23 C4 A B1501 26.783 -10.091 141.767 1.00 89.34 C
ATOM 24 P A B1502 25.288 -14.756 146.336 1.00 62.82 P
ATOM 25 OP1 A B1502 26.584 -15.452 146.227 1.00 62.86 O
ATOM 26 OP2 A B1502 24.043 -15.497 145.978 1.00 62.38 O
ATOM 27 O5' A B1502 25.149 -14.142 147.782 1.00 63.49 O
TER
Atoms:
C4: (24.106,-7.588,136.950)
N3: (23.869,-7.532,135.602)
OP1: (15.961,-5.263,136.553)
OP2: (15.725,-6.632,138.706)
C2: (22.735,-7.948,134.963)
C1': (20.547,-8.891,134.997)
C3': (18.655,-9.964,136.003)
O5': (17.516,-7.211,137.010)
O4': (19.484,-7.975,135.135)
C5': (17.138,-7.867,135.804)
P: (16.597,-6.058,137.641)
C4': (18.254,-8.720,135.226)
C2': (20.050,-10.272,135.443)
O2': (19.960,-11.108,134.302)
N1: (21.723,-8.434,135.766)
O4: (25.191,-7.174,137.366)
O2: (22.618,-7.856,133.757)
C6: (21.889,-8.550,137.124)
C5: (23.022,-8.142,137.718)
O3': (17.735,-11.029,135.828)
N3: (23.869,-7.532,135.602)
OP1: (15.961,-5.263,136.553)
OP2: (15.725,-6.632,138.706)
C2: (22.735,-7.948,134.963)
C1': (20.547,-8.891,134.997)
C3': (18.655,-9.964,136.003)
O5': (17.516,-7.211,137.010)
O4': (19.484,-7.975,135.135)
C5': (17.138,-7.867,135.804)
P: (16.597,-6.058,137.641)
C4': (18.254,-8.720,135.226)
C2': (20.050,-10.272,135.443)
O2': (19.960,-11.108,134.302)
N1: (21.723,-8.434,135.766)
O4: (25.191,-7.174,137.366)
O2: (22.618,-7.856,133.757)
C6: (21.889,-8.550,137.124)
C5: (23.022,-8.142,137.718)
O3': (17.735,-11.029,135.828)
OP1: (19.778,-14.158,142.248)
OP2: (20.571,-11.981,141.095)
C3': (24.276,-13.109,144.525)
C1': (25.538,-11.914,142.961)
C5': (23.098,-14.324,142.598)
O4': (25.163,-13.107,142.315)
C8: (24.850,-10.565,140.895)
O2': (24.857,-10.760,145.009)
C6: (27.532,-8.402,140.279)
C5: (26.542,-9.319,140.651)
C4: (26.783,-10.091,141.767)
P: (20.879,-13.348,141.627)
C4': (24.399,-13.922,143.239)
C2': (24.458,-11.685,144.017)
C2: (28.728,-9.177,142.095)
N1: (28.639,-8.358,141.043)
N3: (27.867,-10.071,142.544)
N6: (27.437,-7.578,139.231)
N7: (25.310,-9.622,140.106)
N9: (25.674,-10.874,141.940)
O5': (22.119,-13.276,142.622)
O3': (25.361,-13.444,145.400)
OP2: (20.571,-11.981,141.095)
C3': (24.276,-13.109,144.525)
C1': (25.538,-11.914,142.961)
C5': (23.098,-14.324,142.598)
O4': (25.163,-13.107,142.315)
C8: (24.850,-10.565,140.895)
O2': (24.857,-10.760,145.009)
C6: (27.532,-8.402,140.279)
C5: (26.542,-9.319,140.651)
C4: (26.783,-10.091,141.767)
P: (20.879,-13.348,141.627)
C4': (24.399,-13.922,143.239)
C2': (24.458,-11.685,144.017)
C2: (28.728,-9.177,142.095)
N1: (28.639,-8.358,141.043)
N3: (27.867,-10.071,142.544)
N6: (27.437,-7.578,139.231)
N7: (25.310,-9.622,140.106)
N9: (25.674,-10.874,141.940)
O5': (22.119,-13.276,142.622)
O3': (25.361,-13.444,145.400)
Image (generated by PyMOL):