Doublet info:
Details
Nucleotide types:
GG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YHQ:0552:0580
Extra
PDB:
ATOM 1 O3' C A 551 -11.026 95.432 94.196 1.00 45.43 O
ATOM 2 P G A 552 -10.699 94.328 95.311 1.00 48.81 P
ATOM 3 OP1 G A 552 -10.514 93.024 94.619 1.00 47.26 O
ATOM 4 OP2 G A 552 -11.713 94.454 96.394 1.00 48.00 O
ATOM 5 O5' G A 552 -9.300 94.786 95.929 1.00 49.34 O
ATOM 6 C5' G A 552 -8.131 94.960 95.105 1.00 47.60 C
ATOM 7 C4' G A 552 -7.054 95.681 95.878 1.00 46.38 C
ATOM 8 O4' G A 552 -7.525 96.999 96.260 1.00 48.55 O
ATOM 9 C3' G A 552 -6.644 95.034 97.189 1.00 45.73 C
ATOM 10 O3' G A 552 -5.693 94.010 96.932 1.00 43.85 O
ATOM 11 C2' G A 552 -6.059 96.209 97.963 1.00 46.98 C
ATOM 12 O2' G A 552 -4.723 96.501 97.609 1.00 46.81 O
ATOM 13 C1' G A 552 -6.974 97.357 97.518 1.00 49.07 C
ATOM 14 N9 G A 552 -8.071 97.617 98.448 1.00 52.27 N
ATOM 15 C8 G A 552 -9.212 96.866 98.609 1.00 52.94 C
ATOM 16 N7 G A 552 -9.988 97.309 99.559 1.00 55.26 N
ATOM 17 C5 G A 552 -9.330 98.429 100.050 1.00 55.91 C
ATOM 18 C6 G A 552 -9.684 99.320 101.108 1.00 56.85 C
ATOM 19 O6 G A 552 -10.682 99.293 101.848 1.00 57.47 O
ATOM 20 N1 G A 552 -8.730 100.318 101.272 1.00 57.18 N
ATOM 21 C2 G A 552 -7.585 100.445 100.529 1.00 56.30 C
ATOM 22 N2 G A 552 -6.793 101.475 100.853 1.00 56.90 N
ATOM 23 N3 G A 552 -7.242 99.626 99.546 1.00 55.46 N
ATOM 24 C4 G A 552 -8.153 98.645 99.364 1.00 54.33 C
ATOM 25 P A A 553 -5.241 93.003 98.102 1.00 45.52 P
ATOM 26 OP1 A A 553 -5.860 91.680 97.821 1.00 41.37 O
ATOM 27 OP2 A A 553 -5.425 93.635 99.435 1.00 41.04 O
ATOM 28 O5' A A 553 -3.676 92.848 97.840 1.00 45.62 O
TER
ATOM 1 O3' A B 579 -6.380 102.880 106.138 1.00 52.17 O
ATOM 2 P G B 580 -6.268 103.311 104.595 1.00 52.31 P
ATOM 3 OP1 G B 580 -5.930 104.755 104.590 1.00 52.02 O
ATOM 4 OP2 G B 580 -7.473 102.834 103.871 1.00 52.69 O
ATOM 5 O5' G B 580 -5.028 102.476 104.045 1.00 50.64 O
ATOM 6 C5' G B 580 -3.680 102.767 104.466 1.00 47.04 C
ATOM 7 C4' G B 580 -2.720 101.793 103.827 1.00 46.17 C
ATOM 8 O4' G B 580 -2.986 100.455 104.323 1.00 45.20 O
ATOM 9 C3' G B 580 -2.839 101.667 102.316 1.00 45.14 C
ATOM 10 O3' G B 580 -2.073 102.662 101.658 1.00 46.95 O
ATOM 11 C2' G B 580 -2.266 100.280 102.061 1.00 44.46 C
ATOM 12 O2' G B 580 -0.857 100.263 102.045 1.00 46.88 O
ATOM 13 C1' G B 580 -2.773 99.511 103.285 1.00 44.01 C
ATOM 14 N9 G B 580 -4.038 98.839 103.014 1.00 42.34 N
ATOM 15 C8 G B 580 -5.304 99.323 103.252 1.00 44.27 C
ATOM 16 N7 G B 580 -6.244 98.512 102.855 1.00 43.63 N
ATOM 17 C5 G B 580 -5.558 97.425 102.335 1.00 41.40 C
ATOM 18 C6 G B 580 -6.044 96.247 101.754 1.00 40.89 C
ATOM 19 O6 G B 580 -7.215 95.915 101.567 1.00 45.68 O
ATOM 20 N1 G B 580 -5.011 95.405 101.362 1.00 41.15 N
ATOM 21 C2 G B 580 -3.674 95.674 101.512 1.00 42.23 C
ATOM 22 N2 G B 580 -2.825 94.728 101.081 1.00 41.21 N
ATOM 23 N3 G B 580 -3.205 96.785 102.049 1.00 41.13 N
ATOM 24 C4 G B 580 -4.196 97.609 102.437 1.00 40.91 C
ATOM 25 P A B 581 -2.781 103.997 101.118 1.00 50.37 P
ATOM 26 OP1 A B 581 -2.830 104.971 102.244 1.00 48.33 O
ATOM 27 OP2 A B 581 -4.029 103.632 100.410 1.00 50.24 O
ATOM 28 O5' A B 581 -1.755 104.548 100.034 1.00 51.01 O
TER
ATOM 2 P G A 552 -10.699 94.328 95.311 1.00 48.81 P
ATOM 3 OP1 G A 552 -10.514 93.024 94.619 1.00 47.26 O
ATOM 4 OP2 G A 552 -11.713 94.454 96.394 1.00 48.00 O
ATOM 5 O5' G A 552 -9.300 94.786 95.929 1.00 49.34 O
ATOM 6 C5' G A 552 -8.131 94.960 95.105 1.00 47.60 C
ATOM 7 C4' G A 552 -7.054 95.681 95.878 1.00 46.38 C
ATOM 8 O4' G A 552 -7.525 96.999 96.260 1.00 48.55 O
ATOM 9 C3' G A 552 -6.644 95.034 97.189 1.00 45.73 C
ATOM 10 O3' G A 552 -5.693 94.010 96.932 1.00 43.85 O
ATOM 11 C2' G A 552 -6.059 96.209 97.963 1.00 46.98 C
ATOM 12 O2' G A 552 -4.723 96.501 97.609 1.00 46.81 O
ATOM 13 C1' G A 552 -6.974 97.357 97.518 1.00 49.07 C
ATOM 14 N9 G A 552 -8.071 97.617 98.448 1.00 52.27 N
ATOM 15 C8 G A 552 -9.212 96.866 98.609 1.00 52.94 C
ATOM 16 N7 G A 552 -9.988 97.309 99.559 1.00 55.26 N
ATOM 17 C5 G A 552 -9.330 98.429 100.050 1.00 55.91 C
ATOM 18 C6 G A 552 -9.684 99.320 101.108 1.00 56.85 C
ATOM 19 O6 G A 552 -10.682 99.293 101.848 1.00 57.47 O
ATOM 20 N1 G A 552 -8.730 100.318 101.272 1.00 57.18 N
ATOM 21 C2 G A 552 -7.585 100.445 100.529 1.00 56.30 C
ATOM 22 N2 G A 552 -6.793 101.475 100.853 1.00 56.90 N
ATOM 23 N3 G A 552 -7.242 99.626 99.546 1.00 55.46 N
ATOM 24 C4 G A 552 -8.153 98.645 99.364 1.00 54.33 C
ATOM 25 P A A 553 -5.241 93.003 98.102 1.00 45.52 P
ATOM 26 OP1 A A 553 -5.860 91.680 97.821 1.00 41.37 O
ATOM 27 OP2 A A 553 -5.425 93.635 99.435 1.00 41.04 O
ATOM 28 O5' A A 553 -3.676 92.848 97.840 1.00 45.62 O
TER
ATOM 1 O3' A B 579 -6.380 102.880 106.138 1.00 52.17 O
ATOM 2 P G B 580 -6.268 103.311 104.595 1.00 52.31 P
ATOM 3 OP1 G B 580 -5.930 104.755 104.590 1.00 52.02 O
ATOM 4 OP2 G B 580 -7.473 102.834 103.871 1.00 52.69 O
ATOM 5 O5' G B 580 -5.028 102.476 104.045 1.00 50.64 O
ATOM 6 C5' G B 580 -3.680 102.767 104.466 1.00 47.04 C
ATOM 7 C4' G B 580 -2.720 101.793 103.827 1.00 46.17 C
ATOM 8 O4' G B 580 -2.986 100.455 104.323 1.00 45.20 O
ATOM 9 C3' G B 580 -2.839 101.667 102.316 1.00 45.14 C
ATOM 10 O3' G B 580 -2.073 102.662 101.658 1.00 46.95 O
ATOM 11 C2' G B 580 -2.266 100.280 102.061 1.00 44.46 C
ATOM 12 O2' G B 580 -0.857 100.263 102.045 1.00 46.88 O
ATOM 13 C1' G B 580 -2.773 99.511 103.285 1.00 44.01 C
ATOM 14 N9 G B 580 -4.038 98.839 103.014 1.00 42.34 N
ATOM 15 C8 G B 580 -5.304 99.323 103.252 1.00 44.27 C
ATOM 16 N7 G B 580 -6.244 98.512 102.855 1.00 43.63 N
ATOM 17 C5 G B 580 -5.558 97.425 102.335 1.00 41.40 C
ATOM 18 C6 G B 580 -6.044 96.247 101.754 1.00 40.89 C
ATOM 19 O6 G B 580 -7.215 95.915 101.567 1.00 45.68 O
ATOM 20 N1 G B 580 -5.011 95.405 101.362 1.00 41.15 N
ATOM 21 C2 G B 580 -3.674 95.674 101.512 1.00 42.23 C
ATOM 22 N2 G B 580 -2.825 94.728 101.081 1.00 41.21 N
ATOM 23 N3 G B 580 -3.205 96.785 102.049 1.00 41.13 N
ATOM 24 C4 G B 580 -4.196 97.609 102.437 1.00 40.91 C
ATOM 25 P A B 581 -2.781 103.997 101.118 1.00 50.37 P
ATOM 26 OP1 A B 581 -2.830 104.971 102.244 1.00 48.33 O
ATOM 27 OP2 A B 581 -4.029 103.632 100.410 1.00 50.24 O
ATOM 28 O5' A B 581 -1.755 104.548 100.034 1.00 51.01 O
TER
Atoms:
OP1: (-10.514,93.024,94.619)
OP2: (-11.713,94.454,96.394)
C3': (-6.644,95.034,97.189)
C1': (-6.974,97.357,97.518)
C5': (-8.131,94.960,95.105)
O6: (-10.682,99.293,101.848)
O4': (-7.525,96.999,96.260)
C8: (-9.212,96.866,98.609)
C2: (-7.585,100.445,100.529)
C6: (-9.684,99.320,101.108)
C5: (-9.330,98.429,100.050)
C4: (-8.153,98.645,99.364)
P: (-10.699,94.328,95.311)
C4': (-7.054,95.681,95.878)
C2': (-6.059,96.209,97.963)
O2': (-4.723,96.501,97.609)
N1: (-8.730,100.318,101.272)
N2: (-6.793,101.475,100.853)
N3: (-7.242,99.626,99.546)
N7: (-9.988,97.309,99.559)
N9: (-8.071,97.617,98.448)
O5': (-9.300,94.786,95.929)
O3': (-5.693,94.010,96.932)
OP2: (-11.713,94.454,96.394)
C3': (-6.644,95.034,97.189)
C1': (-6.974,97.357,97.518)
C5': (-8.131,94.960,95.105)
O6: (-10.682,99.293,101.848)
O4': (-7.525,96.999,96.260)
C8: (-9.212,96.866,98.609)
C2: (-7.585,100.445,100.529)
C6: (-9.684,99.320,101.108)
C5: (-9.330,98.429,100.050)
C4: (-8.153,98.645,99.364)
P: (-10.699,94.328,95.311)
C4': (-7.054,95.681,95.878)
C2': (-6.059,96.209,97.963)
O2': (-4.723,96.501,97.609)
N1: (-8.730,100.318,101.272)
N2: (-6.793,101.475,100.853)
N3: (-7.242,99.626,99.546)
N7: (-9.988,97.309,99.559)
N9: (-8.071,97.617,98.448)
O5': (-9.300,94.786,95.929)
O3': (-5.693,94.010,96.932)
OP1: (-5.930,104.755,104.590)
OP2: (-7.473,102.834,103.871)
C3': (-2.839,101.667,102.316)
C1': (-2.773,99.511,103.285)
C5': (-3.680,102.767,104.466)
O6: (-7.215,95.915,101.567)
O4': (-2.986,100.455,104.323)
C8: (-5.304,99.323,103.252)
C2: (-3.674,95.674,101.512)
C6: (-6.044,96.247,101.754)
C5: (-5.558,97.425,102.335)
C4: (-4.196,97.609,102.437)
P: (-6.268,103.311,104.595)
C4': (-2.720,101.793,103.827)
C2': (-2.266,100.280,102.061)
O2': (-0.857,100.263,102.045)
N1: (-5.011,95.405,101.362)
N2: (-2.825,94.728,101.081)
N3: (-3.205,96.785,102.049)
N7: (-6.244,98.512,102.855)
N9: (-4.038,98.839,103.014)
O5': (-5.028,102.476,104.045)
O3': (-2.073,102.662,101.658)
OP2: (-7.473,102.834,103.871)
C3': (-2.839,101.667,102.316)
C1': (-2.773,99.511,103.285)
C5': (-3.680,102.767,104.466)
O6: (-7.215,95.915,101.567)
O4': (-2.986,100.455,104.323)
C8: (-5.304,99.323,103.252)
C2: (-3.674,95.674,101.512)
C6: (-6.044,96.247,101.754)
C5: (-5.558,97.425,102.335)
C4: (-4.196,97.609,102.437)
P: (-6.268,103.311,104.595)
C4': (-2.720,101.793,103.827)
C2': (-2.266,100.280,102.061)
O2': (-0.857,100.263,102.045)
N1: (-5.011,95.405,101.362)
N2: (-2.825,94.728,101.081)
N3: (-3.205,96.785,102.049)
N7: (-6.244,98.512,102.855)
N9: (-4.038,98.839,103.014)
O5': (-5.028,102.476,104.045)
O3': (-2.073,102.662,101.658)
Image (generated by PyMOL):