Doublet info:
Details
Nucleotide types:
GG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:01278:0506
Extra
PDB:
ATOM 1 O3' A A1277 19.427 129.236 61.423 1.00 35.74 O
ATOM 2 P G A1278 19.353 129.144 63.022 1.00 35.08 P
ATOM 3 OP1 G A1278 20.005 127.862 63.375 1.00 35.63 O
ATOM 4 OP2 G A1278 17.969 129.412 63.479 1.00 35.48 O
ATOM 5 O5' G A1278 20.270 130.348 63.514 1.00 37.43 O
ATOM 6 C5' G A1278 21.676 130.390 63.196 1.00 35.93 C
ATOM 7 C4' G A1278 22.254 131.720 63.599 1.00 34.13 C
ATOM 8 O4' G A1278 21.596 132.765 62.840 1.00 35.77 O
ATOM 9 C3' G A1278 22.005 132.114 65.042 1.00 35.01 C
ATOM 10 O3' G A1278 22.939 131.512 65.924 1.00 34.45 O
ATOM 11 C2' G A1278 22.129 133.628 64.983 1.00 35.31 C
ATOM 12 O2' G A1278 23.466 134.069 64.939 1.00 35.26 O
ATOM 13 C1' G A1278 21.450 133.926 63.644 1.00 35.48 C
ATOM 14 N9 G A1278 20.024 134.196 63.803 1.00 35.17 N
ATOM 15 C8 G A1278 18.996 133.301 63.641 1.00 34.41 C
ATOM 16 N7 G A1278 17.826 133.812 63.909 1.00 35.74 N
ATOM 17 C5 G A1278 18.092 135.132 64.251 1.00 34.94 C
ATOM 18 C6 G A1278 17.213 136.171 64.638 1.00 34.31 C
ATOM 19 O6 G A1278 15.978 136.141 64.732 1.00 35.84 O
ATOM 20 N1 G A1278 17.899 137.343 64.920 1.00 32.00 N
ATOM 21 C2 G A1278 19.254 137.511 64.818 1.00 33.26 C
ATOM 22 N2 G A1278 19.720 138.744 65.121 1.00 30.23 N
ATOM 23 N3 G A1278 20.090 136.551 64.443 1.00 33.18 N
ATOM 24 C4 G A1278 19.443 135.392 64.182 1.00 35.12 C
ATOM 25 P C A1279 22.464 131.040 67.385 1.00 34.72 P
ATOM 26 OP1 C A1279 23.638 130.359 67.983 1.00 36.45 O
ATOM 27 OP2 C A1279 21.172 130.313 67.273 1.00 32.77 O
ATOM 28 O5' C A1279 22.223 132.396 68.182 1.00 31.19 O
TER
ATOM 1 O3' U B 505 21.028 141.478 64.772 1.00 29.91 O
ATOM 2 P G B 506 20.795 142.196 66.188 1.00 34.01 P
ATOM 3 OP1 G B 506 19.663 141.477 66.841 1.00 31.83 O
ATOM 4 OP2 G B 506 20.727 143.672 66.003 1.00 31.57 O
ATOM 5 O5' G B 506 22.118 141.877 67.010 1.00 34.18 O
ATOM 6 C5' G B 506 22.601 140.533 67.120 1.00 34.94 C
ATOM 7 C4' G B 506 24.006 140.531 67.659 1.00 35.17 C
ATOM 8 O4' G B 506 24.916 141.116 66.673 1.00 35.53 O
ATOM 9 C3' G B 506 24.199 141.340 68.942 1.00 33.63 C
ATOM 10 O3' G B 506 25.050 140.617 69.812 1.00 33.64 O
ATOM 11 C2' G B 506 24.927 142.585 68.445 1.00 33.00 C
ATOM 12 O2' G B 506 25.758 143.209 69.398 1.00 32.95 O
ATOM 13 C1' G B 506 25.789 141.981 67.347 1.00 34.00 C
ATOM 14 N9 G B 506 26.362 142.964 66.437 1.00 34.16 N
ATOM 15 C8 G B 506 25.797 144.138 65.994 1.00 34.27 C
ATOM 16 N7 G B 506 26.637 144.893 65.340 1.00 34.29 N
ATOM 17 C5 G B 506 27.812 144.154 65.315 1.00 37.41 C
ATOM 18 C6 G B 506 29.089 144.467 64.775 1.00 38.22 C
ATOM 19 O6 G B 506 29.451 145.499 64.202 1.00 40.64 O
ATOM 20 N1 G B 506 29.995 143.428 64.968 1.00 37.93 N
ATOM 21 C2 G B 506 29.713 142.240 65.599 1.00 38.11 C
ATOM 22 N2 G B 506 30.717 141.354 65.680 1.00 37.73 N
ATOM 23 N3 G B 506 28.532 141.941 66.113 1.00 37.35 N
ATOM 24 C4 G B 506 27.638 142.939 65.943 1.00 36.63 C
ATOM 25 P A B 507 24.806 140.678 71.394 1.00 34.40 P
ATOM 26 OP1 A B 507 23.375 140.974 71.658 1.00 32.93 O
ATOM 27 OP2 A B 507 25.855 141.558 71.982 1.00 31.84 O
ATOM 28 O5' A B 507 25.095 139.183 71.849 1.00 34.19 O
TER
ATOM 2 P G A1278 19.353 129.144 63.022 1.00 35.08 P
ATOM 3 OP1 G A1278 20.005 127.862 63.375 1.00 35.63 O
ATOM 4 OP2 G A1278 17.969 129.412 63.479 1.00 35.48 O
ATOM 5 O5' G A1278 20.270 130.348 63.514 1.00 37.43 O
ATOM 6 C5' G A1278 21.676 130.390 63.196 1.00 35.93 C
ATOM 7 C4' G A1278 22.254 131.720 63.599 1.00 34.13 C
ATOM 8 O4' G A1278 21.596 132.765 62.840 1.00 35.77 O
ATOM 9 C3' G A1278 22.005 132.114 65.042 1.00 35.01 C
ATOM 10 O3' G A1278 22.939 131.512 65.924 1.00 34.45 O
ATOM 11 C2' G A1278 22.129 133.628 64.983 1.00 35.31 C
ATOM 12 O2' G A1278 23.466 134.069 64.939 1.00 35.26 O
ATOM 13 C1' G A1278 21.450 133.926 63.644 1.00 35.48 C
ATOM 14 N9 G A1278 20.024 134.196 63.803 1.00 35.17 N
ATOM 15 C8 G A1278 18.996 133.301 63.641 1.00 34.41 C
ATOM 16 N7 G A1278 17.826 133.812 63.909 1.00 35.74 N
ATOM 17 C5 G A1278 18.092 135.132 64.251 1.00 34.94 C
ATOM 18 C6 G A1278 17.213 136.171 64.638 1.00 34.31 C
ATOM 19 O6 G A1278 15.978 136.141 64.732 1.00 35.84 O
ATOM 20 N1 G A1278 17.899 137.343 64.920 1.00 32.00 N
ATOM 21 C2 G A1278 19.254 137.511 64.818 1.00 33.26 C
ATOM 22 N2 G A1278 19.720 138.744 65.121 1.00 30.23 N
ATOM 23 N3 G A1278 20.090 136.551 64.443 1.00 33.18 N
ATOM 24 C4 G A1278 19.443 135.392 64.182 1.00 35.12 C
ATOM 25 P C A1279 22.464 131.040 67.385 1.00 34.72 P
ATOM 26 OP1 C A1279 23.638 130.359 67.983 1.00 36.45 O
ATOM 27 OP2 C A1279 21.172 130.313 67.273 1.00 32.77 O
ATOM 28 O5' C A1279 22.223 132.396 68.182 1.00 31.19 O
TER
ATOM 1 O3' U B 505 21.028 141.478 64.772 1.00 29.91 O
ATOM 2 P G B 506 20.795 142.196 66.188 1.00 34.01 P
ATOM 3 OP1 G B 506 19.663 141.477 66.841 1.00 31.83 O
ATOM 4 OP2 G B 506 20.727 143.672 66.003 1.00 31.57 O
ATOM 5 O5' G B 506 22.118 141.877 67.010 1.00 34.18 O
ATOM 6 C5' G B 506 22.601 140.533 67.120 1.00 34.94 C
ATOM 7 C4' G B 506 24.006 140.531 67.659 1.00 35.17 C
ATOM 8 O4' G B 506 24.916 141.116 66.673 1.00 35.53 O
ATOM 9 C3' G B 506 24.199 141.340 68.942 1.00 33.63 C
ATOM 10 O3' G B 506 25.050 140.617 69.812 1.00 33.64 O
ATOM 11 C2' G B 506 24.927 142.585 68.445 1.00 33.00 C
ATOM 12 O2' G B 506 25.758 143.209 69.398 1.00 32.95 O
ATOM 13 C1' G B 506 25.789 141.981 67.347 1.00 34.00 C
ATOM 14 N9 G B 506 26.362 142.964 66.437 1.00 34.16 N
ATOM 15 C8 G B 506 25.797 144.138 65.994 1.00 34.27 C
ATOM 16 N7 G B 506 26.637 144.893 65.340 1.00 34.29 N
ATOM 17 C5 G B 506 27.812 144.154 65.315 1.00 37.41 C
ATOM 18 C6 G B 506 29.089 144.467 64.775 1.00 38.22 C
ATOM 19 O6 G B 506 29.451 145.499 64.202 1.00 40.64 O
ATOM 20 N1 G B 506 29.995 143.428 64.968 1.00 37.93 N
ATOM 21 C2 G B 506 29.713 142.240 65.599 1.00 38.11 C
ATOM 22 N2 G B 506 30.717 141.354 65.680 1.00 37.73 N
ATOM 23 N3 G B 506 28.532 141.941 66.113 1.00 37.35 N
ATOM 24 C4 G B 506 27.638 142.939 65.943 1.00 36.63 C
ATOM 25 P A B 507 24.806 140.678 71.394 1.00 34.40 P
ATOM 26 OP1 A B 507 23.375 140.974 71.658 1.00 32.93 O
ATOM 27 OP2 A B 507 25.855 141.558 71.982 1.00 31.84 O
ATOM 28 O5' A B 507 25.095 139.183 71.849 1.00 34.19 O
TER
Atoms:
OP1: (20.005,127.862,63.375)
OP2: (17.969,129.412,63.479)
C3': (22.005,132.114,65.042)
C1': (21.450,133.926,63.644)
C5': (21.676,130.390,63.196)
O6: (15.978,136.141,64.732)
O4': (21.596,132.765,62.840)
C8: (18.996,133.301,63.641)
C2: (19.254,137.511,64.818)
C6: (17.213,136.171,64.638)
C5: (18.092,135.132,64.251)
C4: (19.443,135.392,64.182)
P: (19.353,129.144,63.022)
C4': (22.254,131.720,63.599)
C2': (22.129,133.628,64.983)
O2': (23.466,134.069,64.939)
N1: (17.899,137.343,64.920)
N2: (19.720,138.744,65.121)
N3: (20.090,136.551,64.443)
N7: (17.826,133.812,63.909)
N9: (20.024,134.196,63.803)
O5': (20.270,130.348,63.514)
O3': (22.939,131.512,65.924)
OP2: (17.969,129.412,63.479)
C3': (22.005,132.114,65.042)
C1': (21.450,133.926,63.644)
C5': (21.676,130.390,63.196)
O6: (15.978,136.141,64.732)
O4': (21.596,132.765,62.840)
C8: (18.996,133.301,63.641)
C2: (19.254,137.511,64.818)
C6: (17.213,136.171,64.638)
C5: (18.092,135.132,64.251)
C4: (19.443,135.392,64.182)
P: (19.353,129.144,63.022)
C4': (22.254,131.720,63.599)
C2': (22.129,133.628,64.983)
O2': (23.466,134.069,64.939)
N1: (17.899,137.343,64.920)
N2: (19.720,138.744,65.121)
N3: (20.090,136.551,64.443)
N7: (17.826,133.812,63.909)
N9: (20.024,134.196,63.803)
O5': (20.270,130.348,63.514)
O3': (22.939,131.512,65.924)
OP1: (19.663,141.477,66.841)
OP2: (20.727,143.672,66.003)
C3': (24.199,141.340,68.942)
C1': (25.789,141.981,67.347)
C5': (22.601,140.533,67.120)
O6: (29.451,145.499,64.202)
O4': (24.916,141.116,66.673)
C8: (25.797,144.138,65.994)
C2: (29.713,142.240,65.599)
C6: (29.089,144.467,64.775)
C5: (27.812,144.154,65.315)
C4: (27.638,142.939,65.943)
P: (20.795,142.196,66.188)
C4': (24.006,140.531,67.659)
C2': (24.927,142.585,68.445)
O2': (25.758,143.209,69.398)
N1: (29.995,143.428,64.968)
N2: (30.717,141.354,65.680)
N3: (28.532,141.941,66.113)
N7: (26.637,144.893,65.340)
N9: (26.362,142.964,66.437)
O5': (22.118,141.877,67.010)
O3': (25.050,140.617,69.812)
OP2: (20.727,143.672,66.003)
C3': (24.199,141.340,68.942)
C1': (25.789,141.981,67.347)
C5': (22.601,140.533,67.120)
O6: (29.451,145.499,64.202)
O4': (24.916,141.116,66.673)
C8: (25.797,144.138,65.994)
C2: (29.713,142.240,65.599)
C6: (29.089,144.467,64.775)
C5: (27.812,144.154,65.315)
C4: (27.638,142.939,65.943)
P: (20.795,142.196,66.188)
C4': (24.006,140.531,67.659)
C2': (24.927,142.585,68.445)
O2': (25.758,143.209,69.398)
N1: (29.995,143.428,64.968)
N2: (30.717,141.354,65.680)
N3: (28.532,141.941,66.113)
N7: (26.637,144.893,65.340)
N9: (26.362,142.964,66.437)
O5': (22.118,141.877,67.010)
O3': (25.050,140.617,69.812)
Image (generated by PyMOL):