Doublet info:
Details
Nucleotide types:
UG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:337:340
Extra
PDB:
ATOM 1 O3' G A 36 5.544 -87.307 44.551 1.00 65.47 O
ATOM 2 P U A 37 4.163 -86.690 45.100 1.00 68.57 P
ATOM 3 OP1 U A 37 4.516 -85.552 45.993 1.00 67.52 O
ATOM 4 OP2 U A 37 3.341 -87.827 45.648 1.00 69.11 O
ATOM 5 O5' U A 37 3.465 -86.140 43.791 1.00 69.14 O
ATOM 6 C5' U A 37 2.109 -86.469 43.500 1.00 69.85 C
ATOM 7 C4' U A 37 1.755 -86.080 42.096 1.00 70.44 C
ATOM 8 O4' U A 37 2.054 -87.171 41.203 1.00 71.30 O
ATOM 9 C3' U A 37 0.296 -85.748 41.854 1.00 70.86 C
ATOM 10 O3' U A 37 0.022 -84.391 42.084 1.00 70.21 O
ATOM 11 C2' U A 37 0.057 -86.157 40.411 1.00 71.82 C
ATOM 12 O2' U A 37 0.412 -85.104 39.534 1.00 71.63 O
ATOM 13 C1' U A 37 1.049 -87.298 40.227 1.00 72.14 C
ATOM 14 N1 U A 37 0.424 -88.618 40.391 1.00 72.90 N
ATOM 15 C2 U A 37 -0.434 -89.042 39.437 1.00 73.85 C
ATOM 16 O2 U A 37 -0.719 -88.340 38.488 1.00 74.06 O
ATOM 17 N3 U A 37 -0.932 -90.304 39.654 1.00 74.53 N
ATOM 18 C4 U A 37 -0.642 -91.173 40.700 1.00 74.37 C
ATOM 19 O4 U A 37 -1.170 -92.303 40.769 1.00 75.08 O
ATOM 20 C5 U A 37 0.284 -90.634 41.643 1.00 73.34 C
ATOM 21 C6 U A 37 0.767 -89.415 41.451 1.00 72.67 C
ATOM 22 P C A 38 -1.284 -83.970 42.887 1.00 79.27 P
ATOM 23 OP1 C A 38 -1.539 -82.545 42.574 1.00 78.85 O
ATOM 24 OP2 C A 38 -1.078 -84.379 44.299 1.00 78.74 O
ATOM 25 O5' C A 38 -2.400 -84.874 42.241 1.00 80.35 O
TER
ATOM 1 O3' C B 39 -3.699 -90.219 35.602 1.00 74.68 O
ATOM 2 P G B 40 -2.891 -91.456 36.257 1.00 79.91 P
ATOM 3 OP1 G B 40 -3.808 -92.638 36.238 1.00 80.83 O
ATOM 4 OP2 G B 40 -2.347 -90.993 37.563 1.00 78.84 O
ATOM 5 O5' G B 40 -1.701 -91.687 35.235 1.00 80.17 O
ATOM 6 C5' G B 40 -0.976 -90.591 34.727 1.00 79.64 C
ATOM 7 C4' G B 40 0.347 -91.015 34.194 1.00 79.73 C
ATOM 8 O4' G B 40 1.003 -91.870 35.161 1.00 79.46 O
ATOM 9 C3' G B 40 0.307 -91.793 32.879 1.00 80.83 C
ATOM 10 O3' G B 40 1.202 -91.189 31.953 1.00 80.74 O
ATOM 11 C2' G B 40 0.817 -93.195 33.256 1.00 81.21 C
ATOM 12 O2' G B 40 1.574 -93.834 32.243 1.00 81.87 O
ATOM 13 C1' G B 40 1.671 -92.902 34.478 1.00 80.16 C
ATOM 14 N9 G B 40 1.858 -94.037 35.391 1.00 80.22 N
ATOM 15 C8 G B 40 1.208 -95.241 35.454 1.00 81.03 C
ATOM 16 N7 G B 40 1.626 -96.027 36.404 1.00 80.83 N
ATOM 17 C5 G B 40 2.631 -95.284 36.995 1.00 79.82 C
ATOM 18 C6 G B 40 3.476 -95.583 38.081 1.00 79.16 C
ATOM 19 O6 G B 40 3.487 -96.621 38.739 1.00 79.38 O
ATOM 20 N1 G B 40 4.369 -94.562 38.401 1.00 78.19 N
ATOM 21 C2 G B 40 4.428 -93.387 37.724 1.00 77.90 C
ATOM 22 N2 G B 40 5.327 -92.518 38.132 1.00 76.97 N
ATOM 23 N3 G B 40 3.647 -93.091 36.707 1.00 78.50 N
ATOM 24 C4 G B 40 2.787 -94.077 36.391 1.00 79.44 C
ATOM 25 P A B 41 0.792 -91.074 30.413 1.00 77.01 P
ATOM 26 OP1 A B 41 -0.614 -91.501 30.327 1.00 77.70 O
ATOM 27 OP2 A B 41 1.859 -91.833 29.609 1.00 77.54 O
ATOM 28 O5' A B 41 0.886 -89.510 30.143 1.00 76.33 O
TER
ATOM 2 P U A 37 4.163 -86.690 45.100 1.00 68.57 P
ATOM 3 OP1 U A 37 4.516 -85.552 45.993 1.00 67.52 O
ATOM 4 OP2 U A 37 3.341 -87.827 45.648 1.00 69.11 O
ATOM 5 O5' U A 37 3.465 -86.140 43.791 1.00 69.14 O
ATOM 6 C5' U A 37 2.109 -86.469 43.500 1.00 69.85 C
ATOM 7 C4' U A 37 1.755 -86.080 42.096 1.00 70.44 C
ATOM 8 O4' U A 37 2.054 -87.171 41.203 1.00 71.30 O
ATOM 9 C3' U A 37 0.296 -85.748 41.854 1.00 70.86 C
ATOM 10 O3' U A 37 0.022 -84.391 42.084 1.00 70.21 O
ATOM 11 C2' U A 37 0.057 -86.157 40.411 1.00 71.82 C
ATOM 12 O2' U A 37 0.412 -85.104 39.534 1.00 71.63 O
ATOM 13 C1' U A 37 1.049 -87.298 40.227 1.00 72.14 C
ATOM 14 N1 U A 37 0.424 -88.618 40.391 1.00 72.90 N
ATOM 15 C2 U A 37 -0.434 -89.042 39.437 1.00 73.85 C
ATOM 16 O2 U A 37 -0.719 -88.340 38.488 1.00 74.06 O
ATOM 17 N3 U A 37 -0.932 -90.304 39.654 1.00 74.53 N
ATOM 18 C4 U A 37 -0.642 -91.173 40.700 1.00 74.37 C
ATOM 19 O4 U A 37 -1.170 -92.303 40.769 1.00 75.08 O
ATOM 20 C5 U A 37 0.284 -90.634 41.643 1.00 73.34 C
ATOM 21 C6 U A 37 0.767 -89.415 41.451 1.00 72.67 C
ATOM 22 P C A 38 -1.284 -83.970 42.887 1.00 79.27 P
ATOM 23 OP1 C A 38 -1.539 -82.545 42.574 1.00 78.85 O
ATOM 24 OP2 C A 38 -1.078 -84.379 44.299 1.00 78.74 O
ATOM 25 O5' C A 38 -2.400 -84.874 42.241 1.00 80.35 O
TER
ATOM 1 O3' C B 39 -3.699 -90.219 35.602 1.00 74.68 O
ATOM 2 P G B 40 -2.891 -91.456 36.257 1.00 79.91 P
ATOM 3 OP1 G B 40 -3.808 -92.638 36.238 1.00 80.83 O
ATOM 4 OP2 G B 40 -2.347 -90.993 37.563 1.00 78.84 O
ATOM 5 O5' G B 40 -1.701 -91.687 35.235 1.00 80.17 O
ATOM 6 C5' G B 40 -0.976 -90.591 34.727 1.00 79.64 C
ATOM 7 C4' G B 40 0.347 -91.015 34.194 1.00 79.73 C
ATOM 8 O4' G B 40 1.003 -91.870 35.161 1.00 79.46 O
ATOM 9 C3' G B 40 0.307 -91.793 32.879 1.00 80.83 C
ATOM 10 O3' G B 40 1.202 -91.189 31.953 1.00 80.74 O
ATOM 11 C2' G B 40 0.817 -93.195 33.256 1.00 81.21 C
ATOM 12 O2' G B 40 1.574 -93.834 32.243 1.00 81.87 O
ATOM 13 C1' G B 40 1.671 -92.902 34.478 1.00 80.16 C
ATOM 14 N9 G B 40 1.858 -94.037 35.391 1.00 80.22 N
ATOM 15 C8 G B 40 1.208 -95.241 35.454 1.00 81.03 C
ATOM 16 N7 G B 40 1.626 -96.027 36.404 1.00 80.83 N
ATOM 17 C5 G B 40 2.631 -95.284 36.995 1.00 79.82 C
ATOM 18 C6 G B 40 3.476 -95.583 38.081 1.00 79.16 C
ATOM 19 O6 G B 40 3.487 -96.621 38.739 1.00 79.38 O
ATOM 20 N1 G B 40 4.369 -94.562 38.401 1.00 78.19 N
ATOM 21 C2 G B 40 4.428 -93.387 37.724 1.00 77.90 C
ATOM 22 N2 G B 40 5.327 -92.518 38.132 1.00 76.97 N
ATOM 23 N3 G B 40 3.647 -93.091 36.707 1.00 78.50 N
ATOM 24 C4 G B 40 2.787 -94.077 36.391 1.00 79.44 C
ATOM 25 P A B 41 0.792 -91.074 30.413 1.00 77.01 P
ATOM 26 OP1 A B 41 -0.614 -91.501 30.327 1.00 77.70 O
ATOM 27 OP2 A B 41 1.859 -91.833 29.609 1.00 77.54 O
ATOM 28 O5' A B 41 0.886 -89.510 30.143 1.00 76.33 O
TER
Atoms:
C4: (-0.642,-91.173,40.700)
N3: (-0.932,-90.304,39.654)
OP1: (4.516,-85.552,45.993)
OP2: (3.341,-87.827,45.648)
C2: (-0.434,-89.042,39.437)
C1': (1.049,-87.298,40.227)
C3': (0.296,-85.748,41.854)
O5': (3.465,-86.140,43.791)
O4': (2.054,-87.171,41.203)
C5': (2.109,-86.469,43.500)
P: (4.163,-86.690,45.100)
C4': (1.755,-86.080,42.096)
C2': (0.057,-86.157,40.411)
O2': (0.412,-85.104,39.534)
N1: (0.424,-88.618,40.391)
O4: (-1.170,-92.303,40.769)
O2: (-0.719,-88.340,38.488)
C6: (0.767,-89.415,41.451)
C5: (0.284,-90.634,41.643)
O3': (0.022,-84.391,42.084)
N3: (-0.932,-90.304,39.654)
OP1: (4.516,-85.552,45.993)
OP2: (3.341,-87.827,45.648)
C2: (-0.434,-89.042,39.437)
C1': (1.049,-87.298,40.227)
C3': (0.296,-85.748,41.854)
O5': (3.465,-86.140,43.791)
O4': (2.054,-87.171,41.203)
C5': (2.109,-86.469,43.500)
P: (4.163,-86.690,45.100)
C4': (1.755,-86.080,42.096)
C2': (0.057,-86.157,40.411)
O2': (0.412,-85.104,39.534)
N1: (0.424,-88.618,40.391)
O4: (-1.170,-92.303,40.769)
O2: (-0.719,-88.340,38.488)
C6: (0.767,-89.415,41.451)
C5: (0.284,-90.634,41.643)
O3': (0.022,-84.391,42.084)
OP1: (-3.808,-92.638,36.238)
OP2: (-2.347,-90.993,37.563)
C3': (0.307,-91.793,32.879)
C1': (1.671,-92.902,34.478)
C5': (-0.976,-90.591,34.727)
O6: (3.487,-96.621,38.739)
O4': (1.003,-91.870,35.161)
C8: (1.208,-95.241,35.454)
C2: (4.428,-93.387,37.724)
C6: (3.476,-95.583,38.081)
C5: (2.631,-95.284,36.995)
C4: (2.787,-94.077,36.391)
P: (-2.891,-91.456,36.257)
C4': (0.347,-91.015,34.194)
C2': (0.817,-93.195,33.256)
O2': (1.574,-93.834,32.243)
N1: (4.369,-94.562,38.401)
N2: (5.327,-92.518,38.132)
N3: (3.647,-93.091,36.707)
N7: (1.626,-96.027,36.404)
N9: (1.858,-94.037,35.391)
O5': (-1.701,-91.687,35.235)
O3': (1.202,-91.189,31.953)
OP2: (-2.347,-90.993,37.563)
C3': (0.307,-91.793,32.879)
C1': (1.671,-92.902,34.478)
C5': (-0.976,-90.591,34.727)
O6: (3.487,-96.621,38.739)
O4': (1.003,-91.870,35.161)
C8: (1.208,-95.241,35.454)
C2: (4.428,-93.387,37.724)
C6: (3.476,-95.583,38.081)
C5: (2.631,-95.284,36.995)
C4: (2.787,-94.077,36.391)
P: (-2.891,-91.456,36.257)
C4': (0.347,-91.015,34.194)
C2': (0.817,-93.195,33.256)
O2': (1.574,-93.834,32.243)
N1: (4.369,-94.562,38.401)
N2: (5.327,-92.518,38.132)
N3: (3.647,-93.091,36.707)
N7: (1.626,-96.027,36.404)
N9: (1.858,-94.037,35.391)
O5': (-1.701,-91.687,35.235)
O3': (1.202,-91.189,31.953)
Image (generated by PyMOL):