Doublet info:
Details
Nucleotide types:
GG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12370:12397
Extra
PDB:
ATOM 1 O3' U A2369 25.049 -21.163 56.213 1.00 44.16 O
ATOM 2 P G A2370 25.040 -21.383 54.635 1.00 39.68 P
ATOM 3 OP1 G A2370 23.628 -21.646 54.245 1.00 39.86 O
ATOM 4 OP2 G A2370 26.074 -22.414 54.326 1.00 39.70 O
ATOM 5 O5' G A2370 25.494 -19.978 54.065 1.00 39.59 O
ATOM 6 C5' G A2370 24.698 -18.834 54.264 1.00 39.56 C
ATOM 7 C4' G A2370 25.553 -17.623 54.440 1.00 39.41 C
ATOM 8 O4' G A2370 26.538 -17.590 53.387 1.00 39.42 O
ATOM 9 C3' G A2370 24.826 -16.288 54.401 1.00 39.41 C
ATOM 10 O3' G A2370 25.488 -15.383 55.285 1.00 39.24 O
ATOM 11 C2' G A2370 25.047 -15.824 52.965 1.00 39.50 C
ATOM 12 O2' G A2370 25.045 -14.421 52.822 1.00 39.46 O
ATOM 13 C1' G A2370 26.421 -16.404 52.640 1.00 39.44 C
ATOM 14 N9 G A2370 26.611 -16.746 51.214 1.00 39.58 N
ATOM 15 C8 G A2370 27.200 -15.964 50.238 1.00 39.60 C
ATOM 16 N7 G A2370 27.214 -16.544 49.075 1.00 39.76 N
ATOM 17 C5 G A2370 26.608 -17.790 49.281 1.00 39.85 C
ATOM 18 C6 G A2370 26.329 -18.889 48.394 1.00 40.05 C
ATOM 19 O6 G A2370 26.582 -18.966 47.192 1.00 40.18 O
ATOM 20 N1 G A2370 25.709 -19.997 48.981 1.00 40.10 N
ATOM 21 C2 G A2370 25.391 -20.012 50.296 1.00 39.98 C
ATOM 22 N2 G A2370 24.816 -21.115 50.721 1.00 40.06 N
ATOM 23 N3 G A2370 25.605 -19.019 51.134 1.00 39.80 N
ATOM 24 C4 G A2370 26.220 -17.929 50.582 1.00 39.74 C
ATOM 25 P G A2371 24.671 -14.418 56.289 1.00 44.19 P
ATOM 26 OP1 G A2371 23.309 -14.982 56.484 1.00 44.32 O
ATOM 27 OP2 G A2371 24.837 -13.018 55.771 1.00 44.18 O
ATOM 28 O5' G A2371 25.486 -14.597 57.627 1.00 44.04 O
TER
ATOM 1 O3' C B2396 22.739 -24.913 50.307 1.00 40.12 O
ATOM 2 P G B2397 23.339 -24.567 48.866 1.00 40.75 P
ATOM 3 OP1 G B2397 24.383 -23.497 49.072 1.00 40.52 O
ATOM 4 OP2 G B2397 22.179 -24.272 47.956 1.00 40.95 O
ATOM 5 O5' G B2397 24.046 -25.929 48.438 1.00 40.87 O
ATOM 6 C5' G B2397 23.296 -27.079 48.127 1.00 41.11 C
ATOM 7 C4' G B2397 23.193 -27.276 46.644 1.00 41.34 C
ATOM 8 O4' G B2397 24.433 -27.826 46.116 1.00 41.37 O
ATOM 9 C3' G B2397 22.136 -28.251 46.173 1.00 41.63 C
ATOM 10 O3' G B2397 20.846 -27.679 46.200 1.00 41.69 O
ATOM 11 C2' G B2397 22.626 -28.582 44.772 1.00 41.83 C
ATOM 12 O2' G B2397 22.343 -27.516 43.901 1.00 41.86 O
ATOM 13 C1' G B2397 24.144 -28.614 44.978 1.00 41.66 C
ATOM 14 N9 G B2397 24.639 -29.970 45.215 1.00 41.75 N
ATOM 15 C8 G B2397 25.265 -30.372 46.329 1.00 41.59 C
ATOM 16 N7 G B2397 25.563 -31.621 46.289 1.00 41.75 N
ATOM 17 C5 G B2397 25.097 -32.070 45.063 1.00 42.03 C
ATOM 18 C6 G B2397 25.155 -33.363 44.441 1.00 42.32 C
ATOM 19 O6 G B2397 25.659 -34.400 44.896 1.00 42.37 O
ATOM 20 N1 G B2397 24.550 -33.381 43.187 1.00 42.57 N
ATOM 21 C2 G B2397 24.011 -32.247 42.627 1.00 42.54 C
ATOM 22 N2 G B2397 23.470 -32.330 41.407 1.00 42.81 N
ATOM 23 N3 G B2397 23.960 -31.066 43.207 1.00 42.28 N
ATOM 24 C4 G B2397 24.520 -31.043 44.408 1.00 42.03 C
ATOM 25 P C B2398 19.552 -28.580 46.532 1.00 40.48 P
ATOM 26 OP1 C B2398 18.385 -27.661 46.588 1.00 40.49 O
ATOM 27 OP2 C B2398 19.872 -29.402 47.724 1.00 40.38 O
ATOM 28 O5' C B2398 19.444 -29.503 45.247 1.00 40.79 O
TER
ATOM 2 P G A2370 25.040 -21.383 54.635 1.00 39.68 P
ATOM 3 OP1 G A2370 23.628 -21.646 54.245 1.00 39.86 O
ATOM 4 OP2 G A2370 26.074 -22.414 54.326 1.00 39.70 O
ATOM 5 O5' G A2370 25.494 -19.978 54.065 1.00 39.59 O
ATOM 6 C5' G A2370 24.698 -18.834 54.264 1.00 39.56 C
ATOM 7 C4' G A2370 25.553 -17.623 54.440 1.00 39.41 C
ATOM 8 O4' G A2370 26.538 -17.590 53.387 1.00 39.42 O
ATOM 9 C3' G A2370 24.826 -16.288 54.401 1.00 39.41 C
ATOM 10 O3' G A2370 25.488 -15.383 55.285 1.00 39.24 O
ATOM 11 C2' G A2370 25.047 -15.824 52.965 1.00 39.50 C
ATOM 12 O2' G A2370 25.045 -14.421 52.822 1.00 39.46 O
ATOM 13 C1' G A2370 26.421 -16.404 52.640 1.00 39.44 C
ATOM 14 N9 G A2370 26.611 -16.746 51.214 1.00 39.58 N
ATOM 15 C8 G A2370 27.200 -15.964 50.238 1.00 39.60 C
ATOM 16 N7 G A2370 27.214 -16.544 49.075 1.00 39.76 N
ATOM 17 C5 G A2370 26.608 -17.790 49.281 1.00 39.85 C
ATOM 18 C6 G A2370 26.329 -18.889 48.394 1.00 40.05 C
ATOM 19 O6 G A2370 26.582 -18.966 47.192 1.00 40.18 O
ATOM 20 N1 G A2370 25.709 -19.997 48.981 1.00 40.10 N
ATOM 21 C2 G A2370 25.391 -20.012 50.296 1.00 39.98 C
ATOM 22 N2 G A2370 24.816 -21.115 50.721 1.00 40.06 N
ATOM 23 N3 G A2370 25.605 -19.019 51.134 1.00 39.80 N
ATOM 24 C4 G A2370 26.220 -17.929 50.582 1.00 39.74 C
ATOM 25 P G A2371 24.671 -14.418 56.289 1.00 44.19 P
ATOM 26 OP1 G A2371 23.309 -14.982 56.484 1.00 44.32 O
ATOM 27 OP2 G A2371 24.837 -13.018 55.771 1.00 44.18 O
ATOM 28 O5' G A2371 25.486 -14.597 57.627 1.00 44.04 O
TER
ATOM 1 O3' C B2396 22.739 -24.913 50.307 1.00 40.12 O
ATOM 2 P G B2397 23.339 -24.567 48.866 1.00 40.75 P
ATOM 3 OP1 G B2397 24.383 -23.497 49.072 1.00 40.52 O
ATOM 4 OP2 G B2397 22.179 -24.272 47.956 1.00 40.95 O
ATOM 5 O5' G B2397 24.046 -25.929 48.438 1.00 40.87 O
ATOM 6 C5' G B2397 23.296 -27.079 48.127 1.00 41.11 C
ATOM 7 C4' G B2397 23.193 -27.276 46.644 1.00 41.34 C
ATOM 8 O4' G B2397 24.433 -27.826 46.116 1.00 41.37 O
ATOM 9 C3' G B2397 22.136 -28.251 46.173 1.00 41.63 C
ATOM 10 O3' G B2397 20.846 -27.679 46.200 1.00 41.69 O
ATOM 11 C2' G B2397 22.626 -28.582 44.772 1.00 41.83 C
ATOM 12 O2' G B2397 22.343 -27.516 43.901 1.00 41.86 O
ATOM 13 C1' G B2397 24.144 -28.614 44.978 1.00 41.66 C
ATOM 14 N9 G B2397 24.639 -29.970 45.215 1.00 41.75 N
ATOM 15 C8 G B2397 25.265 -30.372 46.329 1.00 41.59 C
ATOM 16 N7 G B2397 25.563 -31.621 46.289 1.00 41.75 N
ATOM 17 C5 G B2397 25.097 -32.070 45.063 1.00 42.03 C
ATOM 18 C6 G B2397 25.155 -33.363 44.441 1.00 42.32 C
ATOM 19 O6 G B2397 25.659 -34.400 44.896 1.00 42.37 O
ATOM 20 N1 G B2397 24.550 -33.381 43.187 1.00 42.57 N
ATOM 21 C2 G B2397 24.011 -32.247 42.627 1.00 42.54 C
ATOM 22 N2 G B2397 23.470 -32.330 41.407 1.00 42.81 N
ATOM 23 N3 G B2397 23.960 -31.066 43.207 1.00 42.28 N
ATOM 24 C4 G B2397 24.520 -31.043 44.408 1.00 42.03 C
ATOM 25 P C B2398 19.552 -28.580 46.532 1.00 40.48 P
ATOM 26 OP1 C B2398 18.385 -27.661 46.588 1.00 40.49 O
ATOM 27 OP2 C B2398 19.872 -29.402 47.724 1.00 40.38 O
ATOM 28 O5' C B2398 19.444 -29.503 45.247 1.00 40.79 O
TER
Atoms:
OP1: (23.628,-21.646,54.245)
OP2: (26.074,-22.414,54.326)
C3': (24.826,-16.288,54.401)
C1': (26.421,-16.404,52.640)
C5': (24.698,-18.834,54.264)
O6: (26.582,-18.966,47.192)
O4': (26.538,-17.590,53.387)
C8: (27.200,-15.964,50.238)
C2: (25.391,-20.012,50.296)
C6: (26.329,-18.889,48.394)
C5: (26.608,-17.790,49.281)
C4: (26.220,-17.929,50.582)
P: (25.040,-21.383,54.635)
C4': (25.553,-17.623,54.440)
C2': (25.047,-15.824,52.965)
O2': (25.045,-14.421,52.822)
N1: (25.709,-19.997,48.981)
N2: (24.816,-21.115,50.721)
N3: (25.605,-19.019,51.134)
N7: (27.214,-16.544,49.075)
N9: (26.611,-16.746,51.214)
O5': (25.494,-19.978,54.065)
O3': (25.488,-15.383,55.285)
OP2: (26.074,-22.414,54.326)
C3': (24.826,-16.288,54.401)
C1': (26.421,-16.404,52.640)
C5': (24.698,-18.834,54.264)
O6: (26.582,-18.966,47.192)
O4': (26.538,-17.590,53.387)
C8: (27.200,-15.964,50.238)
C2: (25.391,-20.012,50.296)
C6: (26.329,-18.889,48.394)
C5: (26.608,-17.790,49.281)
C4: (26.220,-17.929,50.582)
P: (25.040,-21.383,54.635)
C4': (25.553,-17.623,54.440)
C2': (25.047,-15.824,52.965)
O2': (25.045,-14.421,52.822)
N1: (25.709,-19.997,48.981)
N2: (24.816,-21.115,50.721)
N3: (25.605,-19.019,51.134)
N7: (27.214,-16.544,49.075)
N9: (26.611,-16.746,51.214)
O5': (25.494,-19.978,54.065)
O3': (25.488,-15.383,55.285)
OP1: (24.383,-23.497,49.072)
OP2: (22.179,-24.272,47.956)
C3': (22.136,-28.251,46.173)
C1': (24.144,-28.614,44.978)
C5': (23.296,-27.079,48.127)
O6: (25.659,-34.400,44.896)
O4': (24.433,-27.826,46.116)
C8: (25.265,-30.372,46.329)
C2: (24.011,-32.247,42.627)
C6: (25.155,-33.363,44.441)
C5: (25.097,-32.070,45.063)
C4: (24.520,-31.043,44.408)
P: (23.339,-24.567,48.866)
C4': (23.193,-27.276,46.644)
C2': (22.626,-28.582,44.772)
O2': (22.343,-27.516,43.901)
N1: (24.550,-33.381,43.187)
N2: (23.470,-32.330,41.407)
N3: (23.960,-31.066,43.207)
N7: (25.563,-31.621,46.289)
N9: (24.639,-29.970,45.215)
O5': (24.046,-25.929,48.438)
O3': (20.846,-27.679,46.200)
OP2: (22.179,-24.272,47.956)
C3': (22.136,-28.251,46.173)
C1': (24.144,-28.614,44.978)
C5': (23.296,-27.079,48.127)
O6: (25.659,-34.400,44.896)
O4': (24.433,-27.826,46.116)
C8: (25.265,-30.372,46.329)
C2: (24.011,-32.247,42.627)
C6: (25.155,-33.363,44.441)
C5: (25.097,-32.070,45.063)
C4: (24.520,-31.043,44.408)
P: (23.339,-24.567,48.866)
C4': (23.193,-27.276,46.644)
C2': (22.626,-28.582,44.772)
O2': (22.343,-27.516,43.901)
N1: (24.550,-33.381,43.187)
N2: (23.470,-32.330,41.407)
N3: (23.960,-31.066,43.207)
N7: (25.563,-31.621,46.289)
N9: (24.639,-29.970,45.215)
O5': (24.046,-25.929,48.438)
O3': (20.846,-27.679,46.200)
Image (generated by PyMOL):