Doublet info:
Details
Nucleotide types:
UG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1VBY:B63:B1
Extra
PDB:
ATOM 1 O3' G A 62 -21.688 45.946 7.235 1.00 67.69 O
ATOM 2 P U A 63 -23.148 46.189 6.647 1.00 70.17 P
ATOM 3 OP1 U A 63 -24.039 45.991 7.823 1.00 69.98 O
ATOM 4 OP2 U A 63 -23.409 45.438 5.391 1.00 71.19 O
ATOM 5 O5' U A 63 -23.130 47.739 6.287 1.00 72.29 O
ATOM 6 C5' U A 63 -22.745 48.710 7.271 1.00 72.12 C
ATOM 7 C4' U A 63 -21.703 49.665 6.720 1.00 72.35 C
ATOM 8 O4' U A 63 -21.512 50.809 7.571 1.00 72.28 O
ATOM 9 C3' U A 63 -20.331 49.103 6.358 1.00 72.77 C
ATOM 10 O3' U A 63 -20.174 48.831 4.934 1.00 74.91 O
ATOM 11 C2' U A 63 -19.308 49.984 7.088 1.00 71.07 C
ATOM 12 O2' U A 63 -18.324 50.493 6.211 1.00 71.52 O
ATOM 13 C1' U A 63 -20.150 51.164 7.574 1.00 72.50 C
ATOM 14 N1 U A 63 -19.800 51.459 8.960 1.00 75.21 N
ATOM 15 C2 U A 63 -18.957 52.514 9.196 1.00 77.78 C
ATOM 16 O2 U A 63 -18.521 53.218 8.305 1.00 81.00 O
ATOM 17 N3 U A 63 -18.638 52.722 10.512 1.00 78.38 N
ATOM 18 C4 U A 63 -19.082 51.996 11.594 1.00 77.50 C
ATOM 19 O4 U A 63 -18.692 52.289 12.724 1.00 77.14 O
ATOM 20 C5 U A 63 -19.974 50.927 11.263 1.00 76.93 C
ATOM 21 C6 U A 63 -20.296 50.704 9.982 1.00 75.17 C
ATOM 22 P G A 64 -19.795 50.017 3.905 1.00 76.05 P
ATOM 23 OP1 G A 64 -18.487 49.752 3.234 1.00 74.59 O
ATOM 24 OP2 G A 64 -19.997 51.302 4.628 1.00 76.32 O
ATOM 25 O5' G A 64 -20.960 49.918 2.819 1.00 77.20 O
TER
ATOM 1 P G B 1 -15.098 52.930 10.899 1.00105.63 P
ATOM 2 OP1 G B 1 -14.488 52.399 9.649 1.00104.82 O
ATOM 3 OP2 G B 1 -16.098 52.117 11.632 1.00105.31 O
ATOM 4 O5' G B 1 -13.933 53.262 11.934 1.00103.93 O
ATOM 5 C5' G B 1 -12.671 53.728 11.477 1.00101.29 C
ATOM 6 C4' G B 1 -11.615 52.654 11.602 1.00 99.84 C
ATOM 7 O4' G B 1 -12.107 51.388 11.107 1.00 97.57 O
ATOM 8 C3' G B 1 -10.392 52.963 10.755 1.00100.19 C
ATOM 9 O3' G B 1 -9.508 53.817 11.467 1.00102.11 O
ATOM 10 C2' G B 1 -9.819 51.588 10.443 1.00 98.17 C
ATOM 11 O2' G B 1 -9.000 51.082 11.479 1.00 98.58 O
ATOM 12 C1' G B 1 -11.091 50.742 10.355 1.00 95.93 C
ATOM 13 N9 G B 1 -11.600 50.565 9.002 1.00 92.69 N
ATOM 14 C8 G B 1 -12.918 50.421 8.647 1.00 92.35 C
ATOM 15 N7 G B 1 -13.094 50.284 7.364 1.00 91.47 N
ATOM 16 C5 G B 1 -11.810 50.337 6.838 1.00 90.65 C
ATOM 17 C6 G B 1 -11.360 50.241 5.494 1.00 89.31 C
ATOM 18 O6 G B 1 -12.029 50.075 4.462 1.00 88.53 O
ATOM 19 N1 G B 1 -9.975 50.354 5.413 1.00 88.36 N
ATOM 20 C2 G B 1 -9.134 50.528 6.481 1.00 88.54 C
ATOM 21 N2 G B 1 -7.828 50.610 6.192 1.00 88.30 N
ATOM 22 N3 G B 1 -9.541 50.612 7.736 1.00 89.31 N
ATOM 23 C4 G B 1 -10.878 50.510 7.838 1.00 90.72 C
ATOM 24 P G B 2 -9.518 55.390 11.159 1.00102.87 P
ATOM 25 OP1 G B 2 -8.906 56.099 12.305 1.00103.54 O
ATOM 26 OP2 G B 2 -10.897 55.730 10.740 1.00102.22 O
ATOM 27 O5' G B 2 -8.564 55.524 9.892 1.00103.12 O
TER
ATOM 2 P U A 63 -23.148 46.189 6.647 1.00 70.17 P
ATOM 3 OP1 U A 63 -24.039 45.991 7.823 1.00 69.98 O
ATOM 4 OP2 U A 63 -23.409 45.438 5.391 1.00 71.19 O
ATOM 5 O5' U A 63 -23.130 47.739 6.287 1.00 72.29 O
ATOM 6 C5' U A 63 -22.745 48.710 7.271 1.00 72.12 C
ATOM 7 C4' U A 63 -21.703 49.665 6.720 1.00 72.35 C
ATOM 8 O4' U A 63 -21.512 50.809 7.571 1.00 72.28 O
ATOM 9 C3' U A 63 -20.331 49.103 6.358 1.00 72.77 C
ATOM 10 O3' U A 63 -20.174 48.831 4.934 1.00 74.91 O
ATOM 11 C2' U A 63 -19.308 49.984 7.088 1.00 71.07 C
ATOM 12 O2' U A 63 -18.324 50.493 6.211 1.00 71.52 O
ATOM 13 C1' U A 63 -20.150 51.164 7.574 1.00 72.50 C
ATOM 14 N1 U A 63 -19.800 51.459 8.960 1.00 75.21 N
ATOM 15 C2 U A 63 -18.957 52.514 9.196 1.00 77.78 C
ATOM 16 O2 U A 63 -18.521 53.218 8.305 1.00 81.00 O
ATOM 17 N3 U A 63 -18.638 52.722 10.512 1.00 78.38 N
ATOM 18 C4 U A 63 -19.082 51.996 11.594 1.00 77.50 C
ATOM 19 O4 U A 63 -18.692 52.289 12.724 1.00 77.14 O
ATOM 20 C5 U A 63 -19.974 50.927 11.263 1.00 76.93 C
ATOM 21 C6 U A 63 -20.296 50.704 9.982 1.00 75.17 C
ATOM 22 P G A 64 -19.795 50.017 3.905 1.00 76.05 P
ATOM 23 OP1 G A 64 -18.487 49.752 3.234 1.00 74.59 O
ATOM 24 OP2 G A 64 -19.997 51.302 4.628 1.00 76.32 O
ATOM 25 O5' G A 64 -20.960 49.918 2.819 1.00 77.20 O
TER
ATOM 1 P G B 1 -15.098 52.930 10.899 1.00105.63 P
ATOM 2 OP1 G B 1 -14.488 52.399 9.649 1.00104.82 O
ATOM 3 OP2 G B 1 -16.098 52.117 11.632 1.00105.31 O
ATOM 4 O5' G B 1 -13.933 53.262 11.934 1.00103.93 O
ATOM 5 C5' G B 1 -12.671 53.728 11.477 1.00101.29 C
ATOM 6 C4' G B 1 -11.615 52.654 11.602 1.00 99.84 C
ATOM 7 O4' G B 1 -12.107 51.388 11.107 1.00 97.57 O
ATOM 8 C3' G B 1 -10.392 52.963 10.755 1.00100.19 C
ATOM 9 O3' G B 1 -9.508 53.817 11.467 1.00102.11 O
ATOM 10 C2' G B 1 -9.819 51.588 10.443 1.00 98.17 C
ATOM 11 O2' G B 1 -9.000 51.082 11.479 1.00 98.58 O
ATOM 12 C1' G B 1 -11.091 50.742 10.355 1.00 95.93 C
ATOM 13 N9 G B 1 -11.600 50.565 9.002 1.00 92.69 N
ATOM 14 C8 G B 1 -12.918 50.421 8.647 1.00 92.35 C
ATOM 15 N7 G B 1 -13.094 50.284 7.364 1.00 91.47 N
ATOM 16 C5 G B 1 -11.810 50.337 6.838 1.00 90.65 C
ATOM 17 C6 G B 1 -11.360 50.241 5.494 1.00 89.31 C
ATOM 18 O6 G B 1 -12.029 50.075 4.462 1.00 88.53 O
ATOM 19 N1 G B 1 -9.975 50.354 5.413 1.00 88.36 N
ATOM 20 C2 G B 1 -9.134 50.528 6.481 1.00 88.54 C
ATOM 21 N2 G B 1 -7.828 50.610 6.192 1.00 88.30 N
ATOM 22 N3 G B 1 -9.541 50.612 7.736 1.00 89.31 N
ATOM 23 C4 G B 1 -10.878 50.510 7.838 1.00 90.72 C
ATOM 24 P G B 2 -9.518 55.390 11.159 1.00102.87 P
ATOM 25 OP1 G B 2 -8.906 56.099 12.305 1.00103.54 O
ATOM 26 OP2 G B 2 -10.897 55.730 10.740 1.00102.22 O
ATOM 27 O5' G B 2 -8.564 55.524 9.892 1.00103.12 O
TER
Atoms:
C4: (-19.082,51.996,11.594)
N3: (-18.638,52.722,10.512)
OP1: (-24.039,45.991,7.823)
OP2: (-23.409,45.438,5.391)
C2: (-18.957,52.514,9.196)
C1': (-20.150,51.164,7.574)
C3': (-20.331,49.103,6.358)
O5': (-23.130,47.739,6.287)
O4': (-21.512,50.809,7.571)
C5': (-22.745,48.710,7.271)
P: (-23.148,46.189,6.647)
C4': (-21.703,49.665,6.720)
C2': (-19.308,49.984,7.088)
O2': (-18.324,50.493,6.211)
N1: (-19.800,51.459,8.960)
O4: (-18.692,52.289,12.724)
O2: (-18.521,53.218,8.305)
C6: (-20.296,50.704,9.982)
C5: (-19.974,50.927,11.263)
O3': (-20.174,48.831,4.934)
N3: (-18.638,52.722,10.512)
OP1: (-24.039,45.991,7.823)
OP2: (-23.409,45.438,5.391)
C2: (-18.957,52.514,9.196)
C1': (-20.150,51.164,7.574)
C3': (-20.331,49.103,6.358)
O5': (-23.130,47.739,6.287)
O4': (-21.512,50.809,7.571)
C5': (-22.745,48.710,7.271)
P: (-23.148,46.189,6.647)
C4': (-21.703,49.665,6.720)
C2': (-19.308,49.984,7.088)
O2': (-18.324,50.493,6.211)
N1: (-19.800,51.459,8.960)
O4: (-18.692,52.289,12.724)
O2: (-18.521,53.218,8.305)
C6: (-20.296,50.704,9.982)
C5: (-19.974,50.927,11.263)
O3': (-20.174,48.831,4.934)
OP1: (-14.488,52.399,9.649)
OP2: (-16.098,52.117,11.632)
C3': (-10.392,52.963,10.755)
C1': (-11.091,50.742,10.355)
C5': (-12.671,53.728,11.477)
O6: (-12.029,50.075,4.462)
O4': (-12.107,51.388,11.107)
C8: (-12.918,50.421,8.647)
C2: (-9.134,50.528,6.481)
C6: (-11.360,50.241,5.494)
C5: (-11.810,50.337,6.838)
C4: (-10.878,50.510,7.838)
P: (-15.098,52.930,10.899)
C4': (-11.615,52.654,11.602)
C2': (-9.819,51.588,10.443)
O2': (-9.000,51.082,11.479)
N1: (-9.975,50.354,5.413)
N2: (-7.828,50.610,6.192)
N3: (-9.541,50.612,7.736)
N7: (-13.094,50.284,7.364)
N9: (-11.600,50.565,9.002)
O5': (-13.933,53.262,11.934)
O3': (-9.508,53.817,11.467)
OP2: (-16.098,52.117,11.632)
C3': (-10.392,52.963,10.755)
C1': (-11.091,50.742,10.355)
C5': (-12.671,53.728,11.477)
O6: (-12.029,50.075,4.462)
O4': (-12.107,51.388,11.107)
C8: (-12.918,50.421,8.647)
C2: (-9.134,50.528,6.481)
C6: (-11.360,50.241,5.494)
C5: (-11.810,50.337,6.838)
C4: (-10.878,50.510,7.838)
P: (-15.098,52.930,10.899)
C4': (-11.615,52.654,11.602)
C2': (-9.819,51.588,10.443)
O2': (-9.000,51.082,11.479)
N1: (-9.975,50.354,5.413)
N2: (-7.828,50.610,6.192)
N3: (-9.541,50.612,7.736)
N7: (-13.094,50.284,7.364)
N9: (-11.600,50.565,9.002)
O5': (-13.933,53.262,11.934)
O3': (-9.508,53.817,11.467)
Image (generated by PyMOL):