Doublet info:
Details
Nucleotide types:
UG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:11966:11967
Extra
PDB:
ATOM 1 O3' A A1965 3.078 -16.341 126.684 1.00 49.36 O
ATOM 2 P U A1966 3.356 -17.554 127.699 1.00 82.81 P
ATOM 3 OP1 U A1966 2.072 -17.903 128.350 1.00 83.22 O
ATOM 4 OP2 U A1966 4.499 -17.155 128.561 1.00 82.97 O
ATOM 5 O5' U A1966 3.794 -18.709 126.720 1.00 82.43 O
ATOM 6 C5' U A1966 5.091 -18.714 126.145 1.00 82.06 C
ATOM 7 C4' U A1966 5.310 -19.940 125.309 1.00 81.78 C
ATOM 8 O4' U A1966 5.187 -21.120 126.146 1.00 82.14 O
ATOM 9 C3' U A1966 4.311 -20.131 124.191 1.00 81.53 C
ATOM 10 O3' U A1966 4.935 -20.861 123.165 1.00 81.13 O
ATOM 11 C2' U A1966 3.246 -21.001 124.833 1.00 81.92 C
ATOM 12 O2' U A1966 2.457 -21.729 123.917 1.00 81.75 O
ATOM 13 C1' U A1966 4.101 -21.914 125.701 1.00 82.15 C
ATOM 14 N1 U A1966 3.400 -22.406 126.876 1.00 82.68 N
ATOM 15 C2 U A1966 3.702 -23.665 127.375 1.00 82.89 C
ATOM 16 O2 U A1966 4.560 -24.397 126.872 1.00 82.64 O
ATOM 17 N3 U A1966 2.962 -24.016 128.498 1.00 83.41 N
ATOM 18 C4 U A1966 1.986 -23.245 129.119 1.00 83.72 C
ATOM 19 O4 U A1966 1.396 -23.662 130.111 1.00 84.19 O
ATOM 20 C5 U A1966 1.750 -21.958 128.522 1.00 83.47 C
ATOM 21 C6 U A1966 2.452 -21.587 127.441 1.00 82.96 C
ATOM 22 P G A1967 5.616 -20.083 121.970 1.00 53.66 P
ATOM 23 OP1 G A1967 5.930 -21.093 120.925 1.00 53.32 O
ATOM 24 OP2 G A1967 6.737 -19.276 122.542 1.00 53.68 O
ATOM 25 O5' G A1967 4.445 -19.123 121.484 1.00 53.61 O
TER
ATOM 1 O3' U B1966 4.935 -20.861 123.165 1.00 81.13 O
ATOM 2 P G B1967 5.616 -20.083 121.970 1.00 53.66 P
ATOM 3 OP1 G B1967 5.930 -21.093 120.925 1.00 53.32 O
ATOM 4 OP2 G B1967 6.737 -19.276 122.542 1.00 53.68 O
ATOM 5 O5' G B1967 4.445 -19.123 121.484 1.00 53.61 O
ATOM 6 C5' G B1967 3.275 -19.652 120.893 1.00 53.60 C
ATOM 7 C4' G B1967 2.505 -18.589 120.165 1.00 53.44 C
ATOM 8 O4' G B1967 2.272 -17.475 121.041 1.00 53.72 O
ATOM 9 C3' G B1967 3.196 -17.966 118.985 1.00 52.96 C
ATOM 10 O3' G B1967 3.137 -18.781 117.833 1.00 52.64 O
ATOM 11 C2' G B1967 2.461 -16.649 118.838 1.00 52.99 C
ATOM 12 O2' G B1967 1.198 -16.866 118.237 1.00 52.99 O
ATOM 13 C1' G B1967 2.222 -16.285 120.292 1.00 53.47 C
ATOM 14 N9 G B1967 3.225 -15.351 120.832 1.00 53.49 N
ATOM 15 C8 G B1967 4.184 -15.728 121.722 1.00 53.65 C
ATOM 16 N7 G B1967 4.958 -14.762 122.107 1.00 53.67 N
ATOM 17 C5 G B1967 4.456 -13.683 121.454 1.00 53.52 C
ATOM 18 C6 G B1967 4.923 -12.381 121.524 1.00 53.49 C
ATOM 19 O6 G B1967 5.850 -11.966 122.191 1.00 53.59 O
ATOM 20 N1 G B1967 4.193 -11.526 120.749 1.00 53.34 N
ATOM 21 C2 G B1967 3.133 -11.896 119.977 1.00 53.24 C
ATOM 22 N2 G B1967 2.599 -10.873 119.295 1.00 53.11 N
ATOM 23 N3 G B1967 2.667 -13.139 119.891 1.00 53.26 N
ATOM 24 C4 G B1967 3.377 -13.991 120.670 1.00 53.41 C
ATOM 25 P G B1968 4.137 -18.512 116.606 1.00 50.07 P
ATOM 26 OP1 G B1968 3.991 -19.637 115.685 1.00 49.86 O
ATOM 27 OP2 G B1968 5.479 -18.202 117.184 1.00 50.06 O
ATOM 28 O5' G B1968 3.540 -17.213 115.939 1.00 49.93 O
TER
ATOM 2 P U A1966 3.356 -17.554 127.699 1.00 82.81 P
ATOM 3 OP1 U A1966 2.072 -17.903 128.350 1.00 83.22 O
ATOM 4 OP2 U A1966 4.499 -17.155 128.561 1.00 82.97 O
ATOM 5 O5' U A1966 3.794 -18.709 126.720 1.00 82.43 O
ATOM 6 C5' U A1966 5.091 -18.714 126.145 1.00 82.06 C
ATOM 7 C4' U A1966 5.310 -19.940 125.309 1.00 81.78 C
ATOM 8 O4' U A1966 5.187 -21.120 126.146 1.00 82.14 O
ATOM 9 C3' U A1966 4.311 -20.131 124.191 1.00 81.53 C
ATOM 10 O3' U A1966 4.935 -20.861 123.165 1.00 81.13 O
ATOM 11 C2' U A1966 3.246 -21.001 124.833 1.00 81.92 C
ATOM 12 O2' U A1966 2.457 -21.729 123.917 1.00 81.75 O
ATOM 13 C1' U A1966 4.101 -21.914 125.701 1.00 82.15 C
ATOM 14 N1 U A1966 3.400 -22.406 126.876 1.00 82.68 N
ATOM 15 C2 U A1966 3.702 -23.665 127.375 1.00 82.89 C
ATOM 16 O2 U A1966 4.560 -24.397 126.872 1.00 82.64 O
ATOM 17 N3 U A1966 2.962 -24.016 128.498 1.00 83.41 N
ATOM 18 C4 U A1966 1.986 -23.245 129.119 1.00 83.72 C
ATOM 19 O4 U A1966 1.396 -23.662 130.111 1.00 84.19 O
ATOM 20 C5 U A1966 1.750 -21.958 128.522 1.00 83.47 C
ATOM 21 C6 U A1966 2.452 -21.587 127.441 1.00 82.96 C
ATOM 22 P G A1967 5.616 -20.083 121.970 1.00 53.66 P
ATOM 23 OP1 G A1967 5.930 -21.093 120.925 1.00 53.32 O
ATOM 24 OP2 G A1967 6.737 -19.276 122.542 1.00 53.68 O
ATOM 25 O5' G A1967 4.445 -19.123 121.484 1.00 53.61 O
TER
ATOM 1 O3' U B1966 4.935 -20.861 123.165 1.00 81.13 O
ATOM 2 P G B1967 5.616 -20.083 121.970 1.00 53.66 P
ATOM 3 OP1 G B1967 5.930 -21.093 120.925 1.00 53.32 O
ATOM 4 OP2 G B1967 6.737 -19.276 122.542 1.00 53.68 O
ATOM 5 O5' G B1967 4.445 -19.123 121.484 1.00 53.61 O
ATOM 6 C5' G B1967 3.275 -19.652 120.893 1.00 53.60 C
ATOM 7 C4' G B1967 2.505 -18.589 120.165 1.00 53.44 C
ATOM 8 O4' G B1967 2.272 -17.475 121.041 1.00 53.72 O
ATOM 9 C3' G B1967 3.196 -17.966 118.985 1.00 52.96 C
ATOM 10 O3' G B1967 3.137 -18.781 117.833 1.00 52.64 O
ATOM 11 C2' G B1967 2.461 -16.649 118.838 1.00 52.99 C
ATOM 12 O2' G B1967 1.198 -16.866 118.237 1.00 52.99 O
ATOM 13 C1' G B1967 2.222 -16.285 120.292 1.00 53.47 C
ATOM 14 N9 G B1967 3.225 -15.351 120.832 1.00 53.49 N
ATOM 15 C8 G B1967 4.184 -15.728 121.722 1.00 53.65 C
ATOM 16 N7 G B1967 4.958 -14.762 122.107 1.00 53.67 N
ATOM 17 C5 G B1967 4.456 -13.683 121.454 1.00 53.52 C
ATOM 18 C6 G B1967 4.923 -12.381 121.524 1.00 53.49 C
ATOM 19 O6 G B1967 5.850 -11.966 122.191 1.00 53.59 O
ATOM 20 N1 G B1967 4.193 -11.526 120.749 1.00 53.34 N
ATOM 21 C2 G B1967 3.133 -11.896 119.977 1.00 53.24 C
ATOM 22 N2 G B1967 2.599 -10.873 119.295 1.00 53.11 N
ATOM 23 N3 G B1967 2.667 -13.139 119.891 1.00 53.26 N
ATOM 24 C4 G B1967 3.377 -13.991 120.670 1.00 53.41 C
ATOM 25 P G B1968 4.137 -18.512 116.606 1.00 50.07 P
ATOM 26 OP1 G B1968 3.991 -19.637 115.685 1.00 49.86 O
ATOM 27 OP2 G B1968 5.479 -18.202 117.184 1.00 50.06 O
ATOM 28 O5' G B1968 3.540 -17.213 115.939 1.00 49.93 O
TER
Atoms:
C4: (1.986,-23.245,129.119)
N3: (2.962,-24.016,128.498)
OP1: (2.072,-17.903,128.350)
OP2: (4.499,-17.155,128.561)
C2: (3.702,-23.665,127.375)
C1': (4.101,-21.914,125.701)
C3': (4.311,-20.131,124.191)
O5': (3.794,-18.709,126.720)
O4': (5.187,-21.120,126.146)
C5': (5.091,-18.714,126.145)
P: (3.356,-17.554,127.699)
C4': (5.310,-19.940,125.309)
C2': (3.246,-21.001,124.833)
O2': (2.457,-21.729,123.917)
N1: (3.400,-22.406,126.876)
O4: (1.396,-23.662,130.111)
O2: (4.560,-24.397,126.872)
C6: (2.452,-21.587,127.441)
C5: (1.750,-21.958,128.522)
O3': (4.935,-20.861,123.165)
N3: (2.962,-24.016,128.498)
OP1: (2.072,-17.903,128.350)
OP2: (4.499,-17.155,128.561)
C2: (3.702,-23.665,127.375)
C1': (4.101,-21.914,125.701)
C3': (4.311,-20.131,124.191)
O5': (3.794,-18.709,126.720)
O4': (5.187,-21.120,126.146)
C5': (5.091,-18.714,126.145)
P: (3.356,-17.554,127.699)
C4': (5.310,-19.940,125.309)
C2': (3.246,-21.001,124.833)
O2': (2.457,-21.729,123.917)
N1: (3.400,-22.406,126.876)
O4: (1.396,-23.662,130.111)
O2: (4.560,-24.397,126.872)
C6: (2.452,-21.587,127.441)
C5: (1.750,-21.958,128.522)
O3': (4.935,-20.861,123.165)
OP1: (5.930,-21.093,120.925)
OP2: (6.737,-19.276,122.542)
C3': (3.196,-17.966,118.985)
C1': (2.222,-16.285,120.292)
C5': (3.275,-19.652,120.893)
O6: (5.850,-11.966,122.191)
O4': (2.272,-17.475,121.041)
C8: (4.184,-15.728,121.722)
C2: (3.133,-11.896,119.977)
C6: (4.923,-12.381,121.524)
C5: (4.456,-13.683,121.454)
C4: (3.377,-13.991,120.670)
P: (5.616,-20.083,121.970)
C4': (2.505,-18.589,120.165)
C2': (2.461,-16.649,118.838)
O2': (1.198,-16.866,118.237)
N1: (4.193,-11.526,120.749)
N2: (2.599,-10.873,119.295)
N3: (2.667,-13.139,119.891)
N7: (4.958,-14.762,122.107)
N9: (3.225,-15.351,120.832)
O5': (4.445,-19.123,121.484)
O3': (3.137,-18.781,117.833)
OP2: (6.737,-19.276,122.542)
C3': (3.196,-17.966,118.985)
C1': (2.222,-16.285,120.292)
C5': (3.275,-19.652,120.893)
O6: (5.850,-11.966,122.191)
O4': (2.272,-17.475,121.041)
C8: (4.184,-15.728,121.722)
C2: (3.133,-11.896,119.977)
C6: (4.923,-12.381,121.524)
C5: (4.456,-13.683,121.454)
C4: (3.377,-13.991,120.670)
P: (5.616,-20.083,121.970)
C4': (2.505,-18.589,120.165)
C2': (2.461,-16.649,118.838)
O2': (1.198,-16.866,118.237)
N1: (4.193,-11.526,120.749)
N2: (2.599,-10.873,119.295)
N3: (2.667,-13.139,119.891)
N7: (4.958,-14.762,122.107)
N9: (3.225,-15.351,120.832)
O5': (4.445,-19.123,121.484)
O3': (3.137,-18.781,117.833)
Image (generated by PyMOL):