Doublet info:
Details
Nucleotide types:
UC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:0613:01003
Extra
PDB:
ATOM 1 O3' U A 612 50.825 108.345 85.996 1.00 35.95 O
ATOM 2 P U A 613 50.514 106.775 86.091 1.00 39.47 P
ATOM 3 OP1 U A 613 51.769 106.059 85.718 1.00 36.74 O
ATOM 4 OP2 U A 613 49.265 106.518 85.333 1.00 36.65 O
ATOM 5 O5' U A 613 50.249 106.524 87.646 1.00 39.87 O
ATOM 6 C5' U A 613 51.326 106.671 88.590 1.00 39.34 C
ATOM 7 C4' U A 613 50.822 106.658 90.013 1.00 37.85 C
ATOM 8 O4' U A 613 49.820 107.689 90.210 1.00 41.00 O
ATOM 9 C3' U A 613 50.097 105.427 90.511 1.00 36.24 C
ATOM 10 O3' U A 613 50.987 104.349 90.763 1.00 34.46 O
ATOM 11 C2' U A 613 49.489 105.970 91.802 1.00 36.53 C
ATOM 12 O2' U A 613 50.451 106.139 92.825 1.00 34.03 O
ATOM 13 C1' U A 613 49.039 107.363 91.355 1.00 37.98 C
ATOM 14 N1 U A 613 47.608 107.423 91.009 1.00 37.47 N
ATOM 15 C2 U A 613 46.687 107.564 92.047 1.00 38.88 C
ATOM 16 O2 U A 613 47.001 107.678 93.211 1.00 40.56 O
ATOM 17 N3 U A 613 45.376 107.558 91.667 1.00 41.47 N
ATOM 18 C4 U A 613 44.887 107.429 90.393 1.00 43.32 C
ATOM 19 O4 U A 613 43.674 107.296 90.230 1.00 45.05 O
ATOM 20 C5 U A 613 45.892 107.322 89.374 1.00 43.00 C
ATOM 21 C6 U A 613 47.185 107.324 89.711 1.00 38.75 C
ATOM 22 P U A 614 50.518 102.842 90.460 1.00 34.19 P
ATOM 23 OP1 U A 614 51.668 101.944 90.709 1.00 34.01 O
ATOM 24 OP2 U A 614 49.847 102.808 89.145 1.00 34.00 O
ATOM 25 O5' U A 614 49.414 102.555 91.568 1.00 33.20 O
TER
ATOM 1 O3' C B1002 54.267 94.764 85.219 1.00 40.87 O
ATOM 2 P C B1003 55.351 95.940 85.332 1.00 41.76 P
ATOM 3 OP1 C B1003 56.052 96.083 84.042 1.00 44.77 O
ATOM 4 OP2 C B1003 56.128 95.613 86.556 1.00 43.73 O
ATOM 5 O5' C B1003 54.530 97.288 85.603 1.00 41.92 O
ATOM 6 C5' C B1003 53.711 97.460 86.795 1.00 40.85 C
ATOM 7 C4' C B1003 54.549 97.914 87.990 1.00 40.22 C
ATOM 8 O4' C B1003 54.974 99.306 87.840 1.00 40.00 O
ATOM 9 C3' C B1003 53.816 97.860 89.335 1.00 38.88 C
ATOM 10 O3' C B1003 54.723 97.451 90.349 1.00 38.87 O
ATOM 11 C2' C B1003 53.430 99.315 89.569 1.00 38.23 C
ATOM 12 O2' C B1003 53.247 99.645 90.927 1.00 38.79 O
ATOM 13 C1' C B1003 54.664 100.012 89.025 1.00 38.63 C
ATOM 14 N1 C B1003 54.511 101.460 88.754 1.00 40.46 N
ATOM 15 C2 C B1003 54.941 102.370 89.746 1.00 42.96 C
ATOM 16 O2 C B1003 55.426 101.927 90.809 1.00 49.21 O
ATOM 17 N3 C B1003 54.821 103.701 89.528 1.00 39.04 N
ATOM 18 C4 C B1003 54.303 104.140 88.387 1.00 37.95 C
ATOM 19 N4 C B1003 54.212 105.460 88.222 1.00 37.09 N
ATOM 20 C5 C B1003 53.854 103.246 87.365 1.00 38.15 C
ATOM 21 C6 C B1003 53.973 101.926 87.588 1.00 38.34 C
ATOM 22 P G B1004 55.015 95.888 90.574 1.00 40.64 P
ATOM 23 OP1 G B1004 56.379 95.748 91.127 1.00 43.78 O
ATOM 24 OP2 G B1004 54.663 95.163 89.333 1.00 41.66 O
ATOM 25 O5' G B1004 53.984 95.449 91.702 1.00 41.35 O
TER
ATOM 2 P U A 613 50.514 106.775 86.091 1.00 39.47 P
ATOM 3 OP1 U A 613 51.769 106.059 85.718 1.00 36.74 O
ATOM 4 OP2 U A 613 49.265 106.518 85.333 1.00 36.65 O
ATOM 5 O5' U A 613 50.249 106.524 87.646 1.00 39.87 O
ATOM 6 C5' U A 613 51.326 106.671 88.590 1.00 39.34 C
ATOM 7 C4' U A 613 50.822 106.658 90.013 1.00 37.85 C
ATOM 8 O4' U A 613 49.820 107.689 90.210 1.00 41.00 O
ATOM 9 C3' U A 613 50.097 105.427 90.511 1.00 36.24 C
ATOM 10 O3' U A 613 50.987 104.349 90.763 1.00 34.46 O
ATOM 11 C2' U A 613 49.489 105.970 91.802 1.00 36.53 C
ATOM 12 O2' U A 613 50.451 106.139 92.825 1.00 34.03 O
ATOM 13 C1' U A 613 49.039 107.363 91.355 1.00 37.98 C
ATOM 14 N1 U A 613 47.608 107.423 91.009 1.00 37.47 N
ATOM 15 C2 U A 613 46.687 107.564 92.047 1.00 38.88 C
ATOM 16 O2 U A 613 47.001 107.678 93.211 1.00 40.56 O
ATOM 17 N3 U A 613 45.376 107.558 91.667 1.00 41.47 N
ATOM 18 C4 U A 613 44.887 107.429 90.393 1.00 43.32 C
ATOM 19 O4 U A 613 43.674 107.296 90.230 1.00 45.05 O
ATOM 20 C5 U A 613 45.892 107.322 89.374 1.00 43.00 C
ATOM 21 C6 U A 613 47.185 107.324 89.711 1.00 38.75 C
ATOM 22 P U A 614 50.518 102.842 90.460 1.00 34.19 P
ATOM 23 OP1 U A 614 51.668 101.944 90.709 1.00 34.01 O
ATOM 24 OP2 U A 614 49.847 102.808 89.145 1.00 34.00 O
ATOM 25 O5' U A 614 49.414 102.555 91.568 1.00 33.20 O
TER
ATOM 1 O3' C B1002 54.267 94.764 85.219 1.00 40.87 O
ATOM 2 P C B1003 55.351 95.940 85.332 1.00 41.76 P
ATOM 3 OP1 C B1003 56.052 96.083 84.042 1.00 44.77 O
ATOM 4 OP2 C B1003 56.128 95.613 86.556 1.00 43.73 O
ATOM 5 O5' C B1003 54.530 97.288 85.603 1.00 41.92 O
ATOM 6 C5' C B1003 53.711 97.460 86.795 1.00 40.85 C
ATOM 7 C4' C B1003 54.549 97.914 87.990 1.00 40.22 C
ATOM 8 O4' C B1003 54.974 99.306 87.840 1.00 40.00 O
ATOM 9 C3' C B1003 53.816 97.860 89.335 1.00 38.88 C
ATOM 10 O3' C B1003 54.723 97.451 90.349 1.00 38.87 O
ATOM 11 C2' C B1003 53.430 99.315 89.569 1.00 38.23 C
ATOM 12 O2' C B1003 53.247 99.645 90.927 1.00 38.79 O
ATOM 13 C1' C B1003 54.664 100.012 89.025 1.00 38.63 C
ATOM 14 N1 C B1003 54.511 101.460 88.754 1.00 40.46 N
ATOM 15 C2 C B1003 54.941 102.370 89.746 1.00 42.96 C
ATOM 16 O2 C B1003 55.426 101.927 90.809 1.00 49.21 O
ATOM 17 N3 C B1003 54.821 103.701 89.528 1.00 39.04 N
ATOM 18 C4 C B1003 54.303 104.140 88.387 1.00 37.95 C
ATOM 19 N4 C B1003 54.212 105.460 88.222 1.00 37.09 N
ATOM 20 C5 C B1003 53.854 103.246 87.365 1.00 38.15 C
ATOM 21 C6 C B1003 53.973 101.926 87.588 1.00 38.34 C
ATOM 22 P G B1004 55.015 95.888 90.574 1.00 40.64 P
ATOM 23 OP1 G B1004 56.379 95.748 91.127 1.00 43.78 O
ATOM 24 OP2 G B1004 54.663 95.163 89.333 1.00 41.66 O
ATOM 25 O5' G B1004 53.984 95.449 91.702 1.00 41.35 O
TER
Atoms:
C4: (44.887,107.429,90.393)
N3: (45.376,107.558,91.667)
OP1: (51.769,106.059,85.718)
OP2: (49.265,106.518,85.333)
C2: (46.687,107.564,92.047)
C1': (49.039,107.363,91.355)
C3': (50.097,105.427,90.511)
O5': (50.249,106.524,87.646)
O4': (49.820,107.689,90.210)
C5': (51.326,106.671,88.590)
P: (50.514,106.775,86.091)
C4': (50.822,106.658,90.013)
C2': (49.489,105.970,91.802)
O2': (50.451,106.139,92.825)
N1: (47.608,107.423,91.009)
O4: (43.674,107.296,90.230)
O2: (47.001,107.678,93.211)
C6: (47.185,107.324,89.711)
C5: (45.892,107.322,89.374)
O3': (50.987,104.349,90.763)
N3: (45.376,107.558,91.667)
OP1: (51.769,106.059,85.718)
OP2: (49.265,106.518,85.333)
C2: (46.687,107.564,92.047)
C1': (49.039,107.363,91.355)
C3': (50.097,105.427,90.511)
O5': (50.249,106.524,87.646)
O4': (49.820,107.689,90.210)
C5': (51.326,106.671,88.590)
P: (50.514,106.775,86.091)
C4': (50.822,106.658,90.013)
C2': (49.489,105.970,91.802)
O2': (50.451,106.139,92.825)
N1: (47.608,107.423,91.009)
O4: (43.674,107.296,90.230)
O2: (47.001,107.678,93.211)
C6: (47.185,107.324,89.711)
C5: (45.892,107.322,89.374)
O3': (50.987,104.349,90.763)
C2: (54.941,102.370,89.746)
OP1: (56.052,96.083,84.042)
OP2: (56.128,95.613,86.556)
C4: (54.303,104.140,88.387)
O5': (54.530,97.288,85.603)
C3': (53.816,97.860,89.335)
C1': (54.664,100.012,89.025)
O4': (54.974,99.306,87.840)
C5': (53.711,97.460,86.795)
P: (55.351,95.940,85.332)
O2: (55.426,101.927,90.809)
C4': (54.549,97.914,87.990)
C2': (53.430,99.315,89.569)
O2': (53.247,99.645,90.927)
N1: (54.511,101.460,88.754)
N3: (54.821,103.701,89.528)
N4: (54.212,105.460,88.222)
C6: (53.973,101.926,87.588)
C5: (53.854,103.246,87.365)
O3': (54.723,97.451,90.349)
OP1: (56.052,96.083,84.042)
OP2: (56.128,95.613,86.556)
C4: (54.303,104.140,88.387)
O5': (54.530,97.288,85.603)
C3': (53.816,97.860,89.335)
C1': (54.664,100.012,89.025)
O4': (54.974,99.306,87.840)
C5': (53.711,97.460,86.795)
P: (55.351,95.940,85.332)
O2: (55.426,101.927,90.809)
C4': (54.549,97.914,87.990)
C2': (53.430,99.315,89.569)
O2': (53.247,99.645,90.927)
N1: (54.511,101.460,88.754)
N3: (54.821,103.701,89.528)
N4: (54.212,105.460,88.222)
C6: (53.973,101.926,87.588)
C5: (53.854,103.246,87.365)
O3': (54.723,97.451,90.349)
Image (generated by PyMOL):