Doublet info:
Details
Nucleotide types:
UC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1KD1:A613:A1003
Extra
PDB:
ATOM 1 O3' U A 612 50.824 108.188 86.081 1.00 33.38 O
ATOM 2 P U A 613 50.529 106.610 86.247 1.00 35.64 P
ATOM 3 OP1 U A 613 51.824 105.959 85.936 1.00 36.00 O
ATOM 4 OP2 U A 613 49.313 106.205 85.505 1.00 34.08 O
ATOM 5 O5' U A 613 50.246 106.373 87.797 1.00 34.53 O
ATOM 6 C5' U A 613 51.298 106.538 88.764 1.00 33.63 C
ATOM 7 C4' U A 613 50.739 106.518 90.171 1.00 33.87 C
ATOM 8 O4' U A 613 49.664 107.489 90.288 1.00 34.10 O
ATOM 9 C3' U A 613 50.014 105.266 90.635 1.00 32.98 C
ATOM 10 O3' U A 613 50.910 104.172 90.865 1.00 30.74 O
ATOM 11 C2' U A 613 49.326 105.793 91.897 1.00 32.89 C
ATOM 12 O2' U A 613 50.207 106.011 92.979 1.00 33.48 O
ATOM 13 C1' U A 613 48.904 107.192 91.446 1.00 33.73 C
ATOM 14 N1 U A 613 47.469 107.272 91.140 1.00 35.20 N
ATOM 15 C2 U A 613 46.592 107.403 92.210 1.00 35.56 C
ATOM 16 O2 U A 613 46.961 107.507 93.370 1.00 38.07 O
ATOM 17 N3 U A 613 45.264 107.409 91.870 1.00 35.38 N
ATOM 18 C4 U A 613 44.725 107.313 90.609 1.00 36.51 C
ATOM 19 O4 U A 613 43.502 107.294 90.481 1.00 36.45 O
ATOM 20 C5 U A 613 45.685 107.211 89.555 1.00 37.04 C
ATOM 21 C6 U A 613 46.995 107.196 89.849 1.00 35.92 C
ATOM 22 P U A 614 50.418 102.662 90.586 1.00 30.90 P
ATOM 23 OP1 U A 614 51.520 101.695 90.817 1.00 29.99 O
ATOM 24 OP2 U A 614 49.670 102.602 89.316 1.00 29.30 O
ATOM 25 O5' U A 614 49.364 102.434 91.740 1.00 29.82 O
TER
ATOM 1 O3' C B1002 54.208 94.701 85.369 1.00 40.13 O
ATOM 2 P C B1003 55.311 95.865 85.408 1.00 39.69 P
ATOM 3 OP1 C B1003 55.803 96.068 84.032 1.00 42.30 O
ATOM 4 OP2 C B1003 56.257 95.524 86.494 1.00 40.57 O
ATOM 5 O5' C B1003 54.523 97.199 85.777 1.00 39.99 O
ATOM 6 C5' C B1003 53.610 97.238 86.873 1.00 41.06 C
ATOM 7 C4' C B1003 54.320 97.709 88.115 1.00 43.06 C
ATOM 8 O4' C B1003 54.698 99.094 87.920 1.00 44.65 O
ATOM 9 C3' C B1003 53.540 97.676 89.435 1.00 42.72 C
ATOM 10 O3' C B1003 54.450 97.351 90.481 1.00 40.34 O
ATOM 11 C2' C B1003 53.178 99.143 89.639 1.00 42.49 C
ATOM 12 O2' C B1003 53.030 99.512 90.993 1.00 43.41 O
ATOM 13 C1' C B1003 54.433 99.802 89.100 1.00 43.42 C
ATOM 14 N1 C B1003 54.301 101.234 88.795 1.00 44.56 N
ATOM 15 C2 C B1003 54.854 102.138 89.694 1.00 45.41 C
ATOM 16 O2 C B1003 55.426 101.695 90.704 1.00 48.96 O
ATOM 17 N3 C B1003 54.758 103.459 89.447 1.00 43.49 N
ATOM 18 C4 C B1003 54.141 103.887 88.352 1.00 42.78 C
ATOM 19 N4 C B1003 54.084 105.198 88.160 1.00 43.07 N
ATOM 20 C5 C B1003 53.560 102.988 87.411 1.00 43.16 C
ATOM 21 C6 C B1003 53.661 101.681 87.669 1.00 44.12 C
ATOM 22 P G B1004 54.915 95.831 90.714 1.00 40.56 P
ATOM 23 OP1 G B1004 56.170 95.926 91.483 1.00 43.94 O
ATOM 24 OP2 G B1004 54.904 95.076 89.440 1.00 42.19 O
ATOM 25 O5' G B1004 53.831 95.203 91.701 1.00 40.75 O
TER
ATOM 2 P U A 613 50.529 106.610 86.247 1.00 35.64 P
ATOM 3 OP1 U A 613 51.824 105.959 85.936 1.00 36.00 O
ATOM 4 OP2 U A 613 49.313 106.205 85.505 1.00 34.08 O
ATOM 5 O5' U A 613 50.246 106.373 87.797 1.00 34.53 O
ATOM 6 C5' U A 613 51.298 106.538 88.764 1.00 33.63 C
ATOM 7 C4' U A 613 50.739 106.518 90.171 1.00 33.87 C
ATOM 8 O4' U A 613 49.664 107.489 90.288 1.00 34.10 O
ATOM 9 C3' U A 613 50.014 105.266 90.635 1.00 32.98 C
ATOM 10 O3' U A 613 50.910 104.172 90.865 1.00 30.74 O
ATOM 11 C2' U A 613 49.326 105.793 91.897 1.00 32.89 C
ATOM 12 O2' U A 613 50.207 106.011 92.979 1.00 33.48 O
ATOM 13 C1' U A 613 48.904 107.192 91.446 1.00 33.73 C
ATOM 14 N1 U A 613 47.469 107.272 91.140 1.00 35.20 N
ATOM 15 C2 U A 613 46.592 107.403 92.210 1.00 35.56 C
ATOM 16 O2 U A 613 46.961 107.507 93.370 1.00 38.07 O
ATOM 17 N3 U A 613 45.264 107.409 91.870 1.00 35.38 N
ATOM 18 C4 U A 613 44.725 107.313 90.609 1.00 36.51 C
ATOM 19 O4 U A 613 43.502 107.294 90.481 1.00 36.45 O
ATOM 20 C5 U A 613 45.685 107.211 89.555 1.00 37.04 C
ATOM 21 C6 U A 613 46.995 107.196 89.849 1.00 35.92 C
ATOM 22 P U A 614 50.418 102.662 90.586 1.00 30.90 P
ATOM 23 OP1 U A 614 51.520 101.695 90.817 1.00 29.99 O
ATOM 24 OP2 U A 614 49.670 102.602 89.316 1.00 29.30 O
ATOM 25 O5' U A 614 49.364 102.434 91.740 1.00 29.82 O
TER
ATOM 1 O3' C B1002 54.208 94.701 85.369 1.00 40.13 O
ATOM 2 P C B1003 55.311 95.865 85.408 1.00 39.69 P
ATOM 3 OP1 C B1003 55.803 96.068 84.032 1.00 42.30 O
ATOM 4 OP2 C B1003 56.257 95.524 86.494 1.00 40.57 O
ATOM 5 O5' C B1003 54.523 97.199 85.777 1.00 39.99 O
ATOM 6 C5' C B1003 53.610 97.238 86.873 1.00 41.06 C
ATOM 7 C4' C B1003 54.320 97.709 88.115 1.00 43.06 C
ATOM 8 O4' C B1003 54.698 99.094 87.920 1.00 44.65 O
ATOM 9 C3' C B1003 53.540 97.676 89.435 1.00 42.72 C
ATOM 10 O3' C B1003 54.450 97.351 90.481 1.00 40.34 O
ATOM 11 C2' C B1003 53.178 99.143 89.639 1.00 42.49 C
ATOM 12 O2' C B1003 53.030 99.512 90.993 1.00 43.41 O
ATOM 13 C1' C B1003 54.433 99.802 89.100 1.00 43.42 C
ATOM 14 N1 C B1003 54.301 101.234 88.795 1.00 44.56 N
ATOM 15 C2 C B1003 54.854 102.138 89.694 1.00 45.41 C
ATOM 16 O2 C B1003 55.426 101.695 90.704 1.00 48.96 O
ATOM 17 N3 C B1003 54.758 103.459 89.447 1.00 43.49 N
ATOM 18 C4 C B1003 54.141 103.887 88.352 1.00 42.78 C
ATOM 19 N4 C B1003 54.084 105.198 88.160 1.00 43.07 N
ATOM 20 C5 C B1003 53.560 102.988 87.411 1.00 43.16 C
ATOM 21 C6 C B1003 53.661 101.681 87.669 1.00 44.12 C
ATOM 22 P G B1004 54.915 95.831 90.714 1.00 40.56 P
ATOM 23 OP1 G B1004 56.170 95.926 91.483 1.00 43.94 O
ATOM 24 OP2 G B1004 54.904 95.076 89.440 1.00 42.19 O
ATOM 25 O5' G B1004 53.831 95.203 91.701 1.00 40.75 O
TER
Atoms:
C4: (44.725,107.313,90.609)
N3: (45.264,107.409,91.870)
OP1: (51.824,105.959,85.936)
OP2: (49.313,106.205,85.505)
C2: (46.592,107.403,92.210)
C1': (48.904,107.192,91.446)
C3': (50.014,105.266,90.635)
O5': (50.246,106.373,87.797)
O4': (49.664,107.489,90.288)
C5': (51.298,106.538,88.764)
P: (50.529,106.610,86.247)
C4': (50.739,106.518,90.171)
C2': (49.326,105.793,91.897)
O2': (50.207,106.011,92.979)
N1: (47.469,107.272,91.140)
O4: (43.502,107.294,90.481)
O2: (46.961,107.507,93.370)
C6: (46.995,107.196,89.849)
C5: (45.685,107.211,89.555)
O3': (50.910,104.172,90.865)
N3: (45.264,107.409,91.870)
OP1: (51.824,105.959,85.936)
OP2: (49.313,106.205,85.505)
C2: (46.592,107.403,92.210)
C1': (48.904,107.192,91.446)
C3': (50.014,105.266,90.635)
O5': (50.246,106.373,87.797)
O4': (49.664,107.489,90.288)
C5': (51.298,106.538,88.764)
P: (50.529,106.610,86.247)
C4': (50.739,106.518,90.171)
C2': (49.326,105.793,91.897)
O2': (50.207,106.011,92.979)
N1: (47.469,107.272,91.140)
O4: (43.502,107.294,90.481)
O2: (46.961,107.507,93.370)
C6: (46.995,107.196,89.849)
C5: (45.685,107.211,89.555)
O3': (50.910,104.172,90.865)
C2: (54.854,102.138,89.694)
OP1: (55.803,96.068,84.032)
OP2: (56.257,95.524,86.494)
C4: (54.141,103.887,88.352)
O5': (54.523,97.199,85.777)
C3': (53.540,97.676,89.435)
C1': (54.433,99.802,89.100)
O4': (54.698,99.094,87.920)
C5': (53.610,97.238,86.873)
P: (55.311,95.865,85.408)
O2: (55.426,101.695,90.704)
C4': (54.320,97.709,88.115)
C2': (53.178,99.143,89.639)
O2': (53.030,99.512,90.993)
N1: (54.301,101.234,88.795)
N3: (54.758,103.459,89.447)
N4: (54.084,105.198,88.160)
C6: (53.661,101.681,87.669)
C5: (53.560,102.988,87.411)
O3': (54.450,97.351,90.481)
OP1: (55.803,96.068,84.032)
OP2: (56.257,95.524,86.494)
C4: (54.141,103.887,88.352)
O5': (54.523,97.199,85.777)
C3': (53.540,97.676,89.435)
C1': (54.433,99.802,89.100)
O4': (54.698,99.094,87.920)
C5': (53.610,97.238,86.873)
P: (55.311,95.865,85.408)
O2: (55.426,101.695,90.704)
C4': (54.320,97.709,88.115)
C2': (53.178,99.143,89.639)
O2': (53.030,99.512,90.993)
N1: (54.301,101.234,88.795)
N3: (54.758,103.459,89.447)
N4: (54.084,105.198,88.160)
C6: (53.661,101.681,87.669)
C5: (53.560,102.988,87.411)
O3': (54.450,97.351,90.481)
Image (generated by PyMOL):