Doublet info:
Details
Nucleotide types:
UC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:0613:01003
Extra
PDB:
ATOM 1 O3' U A 612 50.657 108.061 85.659 1.00 30.65 O
ATOM 2 P U A 613 50.320 106.498 85.774 1.00 33.51 P
ATOM 3 OP1 U A 613 51.543 105.761 85.343 1.00 29.47 O
ATOM 4 OP2 U A 613 49.034 106.254 85.083 1.00 32.49 O
ATOM 5 O5' U A 613 50.075 106.262 87.332 1.00 31.80 O
ATOM 6 C5' U A 613 51.138 106.454 88.271 1.00 31.76 C
ATOM 7 C4' U A 613 50.616 106.455 89.685 1.00 31.50 C
ATOM 8 O4' U A 613 49.573 107.449 89.827 1.00 32.73 O
ATOM 9 C3' U A 613 49.885 105.226 90.182 1.00 31.53 C
ATOM 10 O3' U A 613 50.761 104.141 90.450 1.00 32.60 O
ATOM 11 C2' U A 613 49.275 105.779 91.464 1.00 31.63 C
ATOM 12 O2' U A 613 50.236 105.964 92.482 1.00 30.31 O
ATOM 13 C1' U A 613 48.832 107.168 91.002 1.00 31.75 C
ATOM 14 N1 U A 613 47.396 107.220 90.695 1.00 32.55 N
ATOM 15 C2 U A 613 46.519 107.417 91.747 1.00 34.09 C
ATOM 16 O2 U A 613 46.884 107.568 92.898 1.00 36.27 O
ATOM 17 N3 U A 613 45.195 107.425 91.406 1.00 35.16 N
ATOM 18 C4 U A 613 44.662 107.262 90.151 1.00 37.67 C
ATOM 19 O4 U A 613 43.437 107.283 90.004 1.00 40.62 O
ATOM 20 C5 U A 613 45.630 107.073 89.115 1.00 37.37 C
ATOM 21 C6 U A 613 46.930 107.061 89.416 1.00 34.57 C
ATOM 22 P U A 614 50.304 102.645 90.085 1.00 31.95 P
ATOM 23 OP1 U A 614 51.481 101.756 90.154 1.00 30.74 O
ATOM 24 OP2 U A 614 49.527 102.727 88.832 1.00 31.02 O
ATOM 25 O5' U A 614 49.321 102.249 91.273 1.00 32.90 O
TER
ATOM 1 O3' C B1002 53.984 94.697 84.848 1.00 32.69 O
ATOM 2 P C B1003 55.186 95.754 84.926 1.00 34.22 P
ATOM 3 OP1 C B1003 55.869 95.835 83.616 1.00 36.14 O
ATOM 4 OP2 C B1003 55.954 95.356 86.130 1.00 35.41 O
ATOM 5 O5' C B1003 54.504 97.172 85.203 1.00 35.01 O
ATOM 6 C5' C B1003 53.602 97.367 86.313 1.00 36.24 C
ATOM 7 C4' C B1003 54.361 97.772 87.567 1.00 36.18 C
ATOM 8 O4' C B1003 54.839 99.148 87.465 1.00 35.62 O
ATOM 9 C3' C B1003 53.534 97.718 88.853 1.00 34.87 C
ATOM 10 O3' C B1003 54.373 97.312 89.929 1.00 35.54 O
ATOM 11 C2' C B1003 53.132 99.172 89.052 1.00 33.69 C
ATOM 12 O2' C B1003 52.850 99.473 90.398 1.00 32.65 O
ATOM 13 C1' C B1003 54.404 99.876 88.599 1.00 35.67 C
ATOM 14 N1 C B1003 54.274 101.315 88.265 1.00 37.20 N
ATOM 15 C2 C B1003 54.725 102.279 89.204 1.00 37.87 C
ATOM 16 O2 C B1003 55.235 101.903 90.271 1.00 40.88 O
ATOM 17 N3 C B1003 54.596 103.587 88.921 1.00 36.95 N
ATOM 18 C4 C B1003 54.054 103.967 87.767 1.00 38.83 C
ATOM 19 N4 C B1003 53.937 105.276 87.542 1.00 41.14 N
ATOM 20 C5 C B1003 53.602 103.023 86.791 1.00 37.15 C
ATOM 21 C6 C B1003 53.727 101.722 87.079 1.00 36.60 C
ATOM 22 P G B1004 54.736 95.757 90.118 1.00 38.50 P
ATOM 23 OP1 G B1004 56.106 95.680 90.656 1.00 40.96 O
ATOM 24 OP2 G B1004 54.404 95.035 88.865 1.00 38.29 O
ATOM 25 O5' G B1004 53.761 95.239 91.265 1.00 37.77 O
TER
ATOM 2 P U A 613 50.320 106.498 85.774 1.00 33.51 P
ATOM 3 OP1 U A 613 51.543 105.761 85.343 1.00 29.47 O
ATOM 4 OP2 U A 613 49.034 106.254 85.083 1.00 32.49 O
ATOM 5 O5' U A 613 50.075 106.262 87.332 1.00 31.80 O
ATOM 6 C5' U A 613 51.138 106.454 88.271 1.00 31.76 C
ATOM 7 C4' U A 613 50.616 106.455 89.685 1.00 31.50 C
ATOM 8 O4' U A 613 49.573 107.449 89.827 1.00 32.73 O
ATOM 9 C3' U A 613 49.885 105.226 90.182 1.00 31.53 C
ATOM 10 O3' U A 613 50.761 104.141 90.450 1.00 32.60 O
ATOM 11 C2' U A 613 49.275 105.779 91.464 1.00 31.63 C
ATOM 12 O2' U A 613 50.236 105.964 92.482 1.00 30.31 O
ATOM 13 C1' U A 613 48.832 107.168 91.002 1.00 31.75 C
ATOM 14 N1 U A 613 47.396 107.220 90.695 1.00 32.55 N
ATOM 15 C2 U A 613 46.519 107.417 91.747 1.00 34.09 C
ATOM 16 O2 U A 613 46.884 107.568 92.898 1.00 36.27 O
ATOM 17 N3 U A 613 45.195 107.425 91.406 1.00 35.16 N
ATOM 18 C4 U A 613 44.662 107.262 90.151 1.00 37.67 C
ATOM 19 O4 U A 613 43.437 107.283 90.004 1.00 40.62 O
ATOM 20 C5 U A 613 45.630 107.073 89.115 1.00 37.37 C
ATOM 21 C6 U A 613 46.930 107.061 89.416 1.00 34.57 C
ATOM 22 P U A 614 50.304 102.645 90.085 1.00 31.95 P
ATOM 23 OP1 U A 614 51.481 101.756 90.154 1.00 30.74 O
ATOM 24 OP2 U A 614 49.527 102.727 88.832 1.00 31.02 O
ATOM 25 O5' U A 614 49.321 102.249 91.273 1.00 32.90 O
TER
ATOM 1 O3' C B1002 53.984 94.697 84.848 1.00 32.69 O
ATOM 2 P C B1003 55.186 95.754 84.926 1.00 34.22 P
ATOM 3 OP1 C B1003 55.869 95.835 83.616 1.00 36.14 O
ATOM 4 OP2 C B1003 55.954 95.356 86.130 1.00 35.41 O
ATOM 5 O5' C B1003 54.504 97.172 85.203 1.00 35.01 O
ATOM 6 C5' C B1003 53.602 97.367 86.313 1.00 36.24 C
ATOM 7 C4' C B1003 54.361 97.772 87.567 1.00 36.18 C
ATOM 8 O4' C B1003 54.839 99.148 87.465 1.00 35.62 O
ATOM 9 C3' C B1003 53.534 97.718 88.853 1.00 34.87 C
ATOM 10 O3' C B1003 54.373 97.312 89.929 1.00 35.54 O
ATOM 11 C2' C B1003 53.132 99.172 89.052 1.00 33.69 C
ATOM 12 O2' C B1003 52.850 99.473 90.398 1.00 32.65 O
ATOM 13 C1' C B1003 54.404 99.876 88.599 1.00 35.67 C
ATOM 14 N1 C B1003 54.274 101.315 88.265 1.00 37.20 N
ATOM 15 C2 C B1003 54.725 102.279 89.204 1.00 37.87 C
ATOM 16 O2 C B1003 55.235 101.903 90.271 1.00 40.88 O
ATOM 17 N3 C B1003 54.596 103.587 88.921 1.00 36.95 N
ATOM 18 C4 C B1003 54.054 103.967 87.767 1.00 38.83 C
ATOM 19 N4 C B1003 53.937 105.276 87.542 1.00 41.14 N
ATOM 20 C5 C B1003 53.602 103.023 86.791 1.00 37.15 C
ATOM 21 C6 C B1003 53.727 101.722 87.079 1.00 36.60 C
ATOM 22 P G B1004 54.736 95.757 90.118 1.00 38.50 P
ATOM 23 OP1 G B1004 56.106 95.680 90.656 1.00 40.96 O
ATOM 24 OP2 G B1004 54.404 95.035 88.865 1.00 38.29 O
ATOM 25 O5' G B1004 53.761 95.239 91.265 1.00 37.77 O
TER
Atoms:
C4: (44.662,107.262,90.151)
N3: (45.195,107.425,91.406)
OP1: (51.543,105.761,85.343)
OP2: (49.034,106.254,85.083)
C2: (46.519,107.417,91.747)
C1': (48.832,107.168,91.002)
C3': (49.885,105.226,90.182)
O5': (50.075,106.262,87.332)
O4': (49.573,107.449,89.827)
C5': (51.138,106.454,88.271)
P: (50.320,106.498,85.774)
C4': (50.616,106.455,89.685)
C2': (49.275,105.779,91.464)
O2': (50.236,105.964,92.482)
N1: (47.396,107.220,90.695)
O4: (43.437,107.283,90.004)
O2: (46.884,107.568,92.898)
C6: (46.930,107.061,89.416)
C5: (45.630,107.073,89.115)
O3': (50.761,104.141,90.450)
N3: (45.195,107.425,91.406)
OP1: (51.543,105.761,85.343)
OP2: (49.034,106.254,85.083)
C2: (46.519,107.417,91.747)
C1': (48.832,107.168,91.002)
C3': (49.885,105.226,90.182)
O5': (50.075,106.262,87.332)
O4': (49.573,107.449,89.827)
C5': (51.138,106.454,88.271)
P: (50.320,106.498,85.774)
C4': (50.616,106.455,89.685)
C2': (49.275,105.779,91.464)
O2': (50.236,105.964,92.482)
N1: (47.396,107.220,90.695)
O4: (43.437,107.283,90.004)
O2: (46.884,107.568,92.898)
C6: (46.930,107.061,89.416)
C5: (45.630,107.073,89.115)
O3': (50.761,104.141,90.450)
C2: (54.725,102.279,89.204)
OP1: (55.869,95.835,83.616)
OP2: (55.954,95.356,86.130)
C4: (54.054,103.967,87.767)
O5': (54.504,97.172,85.203)
C3': (53.534,97.718,88.853)
C1': (54.404,99.876,88.599)
O4': (54.839,99.148,87.465)
C5': (53.602,97.367,86.313)
P: (55.186,95.754,84.926)
O2: (55.235,101.903,90.271)
C4': (54.361,97.772,87.567)
C2': (53.132,99.172,89.052)
O2': (52.850,99.473,90.398)
N1: (54.274,101.315,88.265)
N3: (54.596,103.587,88.921)
N4: (53.937,105.276,87.542)
C6: (53.727,101.722,87.079)
C5: (53.602,103.023,86.791)
O3': (54.373,97.312,89.929)
OP1: (55.869,95.835,83.616)
OP2: (55.954,95.356,86.130)
C4: (54.054,103.967,87.767)
O5': (54.504,97.172,85.203)
C3': (53.534,97.718,88.853)
C1': (54.404,99.876,88.599)
O4': (54.839,99.148,87.465)
C5': (53.602,97.367,86.313)
P: (55.186,95.754,84.926)
O2: (55.235,101.903,90.271)
C4': (54.361,97.772,87.567)
C2': (53.132,99.172,89.052)
O2': (52.850,99.473,90.398)
N1: (54.274,101.315,88.265)
N3: (54.596,103.587,88.921)
N4: (53.937,105.276,87.542)
C6: (53.727,101.722,87.079)
C5: (53.602,103.023,86.791)
O3': (54.373,97.312,89.929)
Image (generated by PyMOL):