Doublet info:
Details
Nucleotide types:
AC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:0117:0118
Extra
PDB:
ATOM 1 P A A 117 84.998 156.562 20.948 1.00 94.62 P
ATOM 2 OP1 A A 117 85.085 155.852 19.637 1.00 92.75 O
ATOM 3 OP2 A A 117 83.719 157.230 21.349 1.00 93.18 O
ATOM 4 O5' A A 117 85.362 155.531 22.104 1.00 90.05 O
ATOM 5 C5' A A 117 86.541 154.709 22.010 1.00 82.92 C
ATOM 6 C4' A A 117 86.573 153.714 23.144 1.00 77.23 C
ATOM 7 O4' A A 117 86.952 154.386 24.382 1.00 73.26 O
ATOM 8 C3' A A 117 85.238 153.063 23.475 1.00 75.25 C
ATOM 9 O3' A A 117 84.709 152.153 22.484 1.00 74.28 O
ATOM 10 C2' A A 117 85.425 152.639 24.929 1.00 72.26 C
ATOM 11 O2' A A 117 86.144 151.440 25.132 1.00 70.75 O
ATOM 12 C1' A A 117 86.224 153.832 25.473 1.00 69.67 C
ATOM 13 N9 A A 117 85.389 154.890 26.059 1.00 65.05 N
ATOM 14 C8 A A 117 84.022 155.038 25.954 1.00 64.02 C
ATOM 15 N7 A A 117 83.544 156.059 26.623 1.00 62.13 N
ATOM 16 C5 A A 117 84.665 156.633 27.200 1.00 60.89 C
ATOM 17 C6 A A 117 84.823 157.745 28.042 1.00 60.06 C
ATOM 18 N6 A A 117 83.809 158.506 28.462 1.00 57.59 N
ATOM 19 N1 A A 117 86.074 158.052 28.446 1.00 61.37 N
ATOM 20 C2 A A 117 87.095 157.284 28.022 1.00 62.18 C
ATOM 21 N3 A A 117 87.073 156.213 27.229 1.00 62.05 N
ATOM 22 C4 A A 117 85.813 155.932 26.851 1.00 62.65 C
ATOM 23 P C A 118 85.466 150.781 22.105 1.00 75.44 P
ATOM 24 OP1 C A 118 86.681 150.572 22.945 1.00 75.77 O
ATOM 25 OP2 C A 118 85.601 150.780 20.624 1.00 74.19 O
ATOM 26 O5' C A 118 84.402 149.648 22.461 1.00 74.55 O
TER
ATOM 1 O3' A B 117 84.709 152.153 22.484 1.00 74.28 O
ATOM 2 P C B 118 85.466 150.781 22.105 1.00 75.44 P
ATOM 3 OP1 C B 118 86.681 150.572 22.945 1.00 75.77 O
ATOM 4 OP2 C B 118 85.601 150.780 20.624 1.00 74.19 O
ATOM 5 O5' C B 118 84.402 149.648 22.461 1.00 74.55 O
ATOM 6 C5' C B 118 83.656 149.681 23.693 1.00 70.86 C
ATOM 7 C4' C B 118 83.404 148.279 24.193 1.00 67.12 C
ATOM 8 O4' C B 118 82.577 147.549 23.247 1.00 68.09 O
ATOM 9 C3' C B 118 84.633 147.403 24.322 1.00 64.81 C
ATOM 10 O3' C B 118 85.355 147.677 25.509 1.00 60.69 O
ATOM 11 C2' C B 118 84.022 146.012 24.325 1.00 65.82 C
ATOM 12 O2' C B 118 83.401 145.687 25.546 1.00 66.87 O
ATOM 13 C1' C B 118 82.922 146.170 23.280 1.00 67.48 C
ATOM 14 N1 C B 118 83.368 145.734 21.943 1.00 69.30 N
ATOM 15 C2 C B 118 83.451 144.354 21.682 1.00 70.81 C
ATOM 16 O2 C B 118 83.122 143.552 22.569 1.00 71.13 O
ATOM 17 N3 C B 118 83.886 143.933 20.470 1.00 72.78 N
ATOM 18 C4 C B 118 84.218 144.826 19.532 1.00 72.51 C
ATOM 19 N4 C B 118 84.648 144.363 18.350 1.00 71.10 N
ATOM 20 C5 C B 118 84.126 146.233 19.764 1.00 71.66 C
ATOM 21 C6 C B 118 83.704 146.638 20.972 1.00 69.76 C
ATOM 22 P A B 119 86.956 147.710 25.466 1.00 57.87 P
ATOM 23 OP1 A B 119 87.321 149.100 25.107 1.00 59.04 O
ATOM 24 OP2 A B 119 87.454 146.593 24.639 1.00 58.09 O
ATOM 25 O5' A B 119 87.384 147.390 26.963 1.00 56.93 O
TER
ATOM 2 OP1 A A 117 85.085 155.852 19.637 1.00 92.75 O
ATOM 3 OP2 A A 117 83.719 157.230 21.349 1.00 93.18 O
ATOM 4 O5' A A 117 85.362 155.531 22.104 1.00 90.05 O
ATOM 5 C5' A A 117 86.541 154.709 22.010 1.00 82.92 C
ATOM 6 C4' A A 117 86.573 153.714 23.144 1.00 77.23 C
ATOM 7 O4' A A 117 86.952 154.386 24.382 1.00 73.26 O
ATOM 8 C3' A A 117 85.238 153.063 23.475 1.00 75.25 C
ATOM 9 O3' A A 117 84.709 152.153 22.484 1.00 74.28 O
ATOM 10 C2' A A 117 85.425 152.639 24.929 1.00 72.26 C
ATOM 11 O2' A A 117 86.144 151.440 25.132 1.00 70.75 O
ATOM 12 C1' A A 117 86.224 153.832 25.473 1.00 69.67 C
ATOM 13 N9 A A 117 85.389 154.890 26.059 1.00 65.05 N
ATOM 14 C8 A A 117 84.022 155.038 25.954 1.00 64.02 C
ATOM 15 N7 A A 117 83.544 156.059 26.623 1.00 62.13 N
ATOM 16 C5 A A 117 84.665 156.633 27.200 1.00 60.89 C
ATOM 17 C6 A A 117 84.823 157.745 28.042 1.00 60.06 C
ATOM 18 N6 A A 117 83.809 158.506 28.462 1.00 57.59 N
ATOM 19 N1 A A 117 86.074 158.052 28.446 1.00 61.37 N
ATOM 20 C2 A A 117 87.095 157.284 28.022 1.00 62.18 C
ATOM 21 N3 A A 117 87.073 156.213 27.229 1.00 62.05 N
ATOM 22 C4 A A 117 85.813 155.932 26.851 1.00 62.65 C
ATOM 23 P C A 118 85.466 150.781 22.105 1.00 75.44 P
ATOM 24 OP1 C A 118 86.681 150.572 22.945 1.00 75.77 O
ATOM 25 OP2 C A 118 85.601 150.780 20.624 1.00 74.19 O
ATOM 26 O5' C A 118 84.402 149.648 22.461 1.00 74.55 O
TER
ATOM 1 O3' A B 117 84.709 152.153 22.484 1.00 74.28 O
ATOM 2 P C B 118 85.466 150.781 22.105 1.00 75.44 P
ATOM 3 OP1 C B 118 86.681 150.572 22.945 1.00 75.77 O
ATOM 4 OP2 C B 118 85.601 150.780 20.624 1.00 74.19 O
ATOM 5 O5' C B 118 84.402 149.648 22.461 1.00 74.55 O
ATOM 6 C5' C B 118 83.656 149.681 23.693 1.00 70.86 C
ATOM 7 C4' C B 118 83.404 148.279 24.193 1.00 67.12 C
ATOM 8 O4' C B 118 82.577 147.549 23.247 1.00 68.09 O
ATOM 9 C3' C B 118 84.633 147.403 24.322 1.00 64.81 C
ATOM 10 O3' C B 118 85.355 147.677 25.509 1.00 60.69 O
ATOM 11 C2' C B 118 84.022 146.012 24.325 1.00 65.82 C
ATOM 12 O2' C B 118 83.401 145.687 25.546 1.00 66.87 O
ATOM 13 C1' C B 118 82.922 146.170 23.280 1.00 67.48 C
ATOM 14 N1 C B 118 83.368 145.734 21.943 1.00 69.30 N
ATOM 15 C2 C B 118 83.451 144.354 21.682 1.00 70.81 C
ATOM 16 O2 C B 118 83.122 143.552 22.569 1.00 71.13 O
ATOM 17 N3 C B 118 83.886 143.933 20.470 1.00 72.78 N
ATOM 18 C4 C B 118 84.218 144.826 19.532 1.00 72.51 C
ATOM 19 N4 C B 118 84.648 144.363 18.350 1.00 71.10 N
ATOM 20 C5 C B 118 84.126 146.233 19.764 1.00 71.66 C
ATOM 21 C6 C B 118 83.704 146.638 20.972 1.00 69.76 C
ATOM 22 P A B 119 86.956 147.710 25.466 1.00 57.87 P
ATOM 23 OP1 A B 119 87.321 149.100 25.107 1.00 59.04 O
ATOM 24 OP2 A B 119 87.454 146.593 24.639 1.00 58.09 O
ATOM 25 O5' A B 119 87.384 147.390 26.963 1.00 56.93 O
TER
Atoms:
OP1: (85.085,155.852,19.637)
OP2: (83.719,157.230,21.349)
C3': (85.238,153.063,23.475)
C1': (86.224,153.832,25.473)
C5': (86.541,154.709,22.010)
O4': (86.952,154.386,24.382)
C8: (84.022,155.038,25.954)
O2': (86.144,151.440,25.132)
C6: (84.823,157.745,28.042)
C5: (84.665,156.633,27.200)
C4: (85.813,155.932,26.851)
P: (84.998,156.562,20.948)
C4': (86.573,153.714,23.144)
C2': (85.425,152.639,24.929)
C2: (87.095,157.284,28.022)
N1: (86.074,158.052,28.446)
N3: (87.073,156.213,27.229)
N6: (83.809,158.506,28.462)
N7: (83.544,156.059,26.623)
N9: (85.389,154.890,26.059)
O5': (85.362,155.531,22.104)
O3': (84.709,152.153,22.484)
OP2: (83.719,157.230,21.349)
C3': (85.238,153.063,23.475)
C1': (86.224,153.832,25.473)
C5': (86.541,154.709,22.010)
O4': (86.952,154.386,24.382)
C8: (84.022,155.038,25.954)
O2': (86.144,151.440,25.132)
C6: (84.823,157.745,28.042)
C5: (84.665,156.633,27.200)
C4: (85.813,155.932,26.851)
P: (84.998,156.562,20.948)
C4': (86.573,153.714,23.144)
C2': (85.425,152.639,24.929)
C2: (87.095,157.284,28.022)
N1: (86.074,158.052,28.446)
N3: (87.073,156.213,27.229)
N6: (83.809,158.506,28.462)
N7: (83.544,156.059,26.623)
N9: (85.389,154.890,26.059)
O5': (85.362,155.531,22.104)
O3': (84.709,152.153,22.484)
C2: (83.451,144.354,21.682)
OP1: (86.681,150.572,22.945)
OP2: (85.601,150.780,20.624)
C4: (84.218,144.826,19.532)
O5': (84.402,149.648,22.461)
C3': (84.633,147.403,24.322)
C1': (82.922,146.170,23.280)
O4': (82.577,147.549,23.247)
C5': (83.656,149.681,23.693)
P: (85.466,150.781,22.105)
O2: (83.122,143.552,22.569)
C4': (83.404,148.279,24.193)
C2': (84.022,146.012,24.325)
O2': (83.401,145.687,25.546)
N1: (83.368,145.734,21.943)
N3: (83.886,143.933,20.470)
N4: (84.648,144.363,18.350)
C6: (83.704,146.638,20.972)
C5: (84.126,146.233,19.764)
O3': (85.355,147.677,25.509)
OP1: (86.681,150.572,22.945)
OP2: (85.601,150.780,20.624)
C4: (84.218,144.826,19.532)
O5': (84.402,149.648,22.461)
C3': (84.633,147.403,24.322)
C1': (82.922,146.170,23.280)
O4': (82.577,147.549,23.247)
C5': (83.656,149.681,23.693)
P: (85.466,150.781,22.105)
O2: (83.122,143.552,22.569)
C4': (83.404,148.279,24.193)
C2': (84.022,146.012,24.325)
O2': (83.401,145.687,25.546)
N1: (83.368,145.734,21.943)
N3: (83.886,143.933,20.470)
N4: (84.648,144.363,18.350)
C6: (83.704,146.638,20.972)
C5: (84.126,146.233,19.764)
O3': (85.355,147.677,25.509)
Image (generated by PyMOL):