Doublet info:
Details
Nucleotide types:
CC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3PDR:X71:X128
Extra
PDB:
ATOM 1 O3' U A 70 12.772 -7.555 15.762 1.00 26.98 O
ATOM 2 P C A 71 11.197 -7.310 15.919 1.00 34.01 P
ATOM 3 OP1 C A 71 10.748 -8.052 17.123 1.00 31.52 O
ATOM 4 OP2 C A 71 10.690 -7.659 14.577 1.00 34.79 O
ATOM 5 O5' C A 71 10.968 -5.758 16.209 1.00 32.37 O
ATOM 6 C5' C A 71 11.466 -4.740 15.344 1.00 35.06 C
ATOM 7 C4' C A 71 10.887 -3.382 15.664 1.00 35.43 C
ATOM 8 O4' C A 71 9.460 -3.389 15.381 1.00 37.45 O
ATOM 9 C3' C A 71 11.037 -2.898 17.111 1.00 37.35 C
ATOM 10 O3' C A 71 11.211 -1.482 17.109 1.00 37.46 O
ATOM 11 C2' C A 71 9.661 -3.209 17.701 1.00 37.69 C
ATOM 12 O2' C A 71 9.301 -2.451 18.838 1.00 37.83 O
ATOM 13 C1' C A 71 8.763 -2.887 16.508 1.00 39.35 C
ATOM 14 N1 C A 71 7.394 -3.455 16.606 1.00 45.04 N
ATOM 15 C2 C A 71 6.296 -2.661 16.234 1.00 46.85 C
ATOM 16 O2 C A 71 6.489 -1.506 15.822 1.00 45.80 O
ATOM 17 N3 C A 71 5.044 -3.173 16.333 1.00 47.47 N
ATOM 18 C4 C A 71 4.865 -4.419 16.783 1.00 46.22 C
ATOM 19 N4 C A 71 3.615 -4.883 16.860 1.00 45.44 N
ATOM 20 C5 C A 71 5.960 -5.242 17.177 1.00 44.47 C
ATOM 21 C6 C A 71 7.193 -4.727 17.075 1.00 43.01 C
ATOM 22 P A A 72 12.628 -0.722 17.216 1.00 38.62 P
ATOM 23 OP1 A A 72 12.261 0.497 17.980 1.00 43.72 O
ATOM 24 OP2 A A 72 13.163 -0.595 15.837 1.00 34.56 O
ATOM 25 O5' A A 72 13.598 -1.616 18.094 1.00 31.08 O
TER
ATOM 1 O3' C B 127 3.984 -2.486 21.924 1.00 33.97 O
ATOM 2 P C B 128 4.394 -0.943 21.821 1.00 32.04 P
ATOM 3 OP1 C B 128 5.844 -1.056 21.468 1.00 35.42 O
ATOM 4 OP2 C B 128 4.008 -0.166 23.025 1.00 30.93 O
ATOM 5 O5' C B 128 3.503 -0.429 20.613 1.00 31.77 O
ATOM 6 C5' C B 128 3.632 -0.972 19.312 1.00 34.49 C
ATOM 7 C4' C B 128 2.643 -0.301 18.402 1.00 34.19 C
ATOM 8 O4' C B 128 1.302 -0.723 18.759 1.00 32.57 O
ATOM 9 C3' C B 128 2.571 1.214 18.524 1.00 34.05 C
ATOM 10 O3' C B 128 3.624 1.897 17.862 1.00 36.92 O
ATOM 11 C2' C B 128 1.188 1.513 17.972 1.00 33.63 C
ATOM 12 O2' C B 128 1.174 1.393 16.556 1.00 37.90 O
ATOM 13 C1' C B 128 0.399 0.336 18.544 1.00 29.82 C
ATOM 14 N1 C B 128 -0.284 0.660 19.809 1.00 29.89 N
ATOM 15 C2 C B 128 -1.506 1.307 19.705 1.00 29.51 C
ATOM 16 O2 C B 128 -1.930 1.576 18.559 1.00 32.84 O
ATOM 17 N3 C B 128 -2.182 1.618 20.840 1.00 29.97 N
ATOM 18 C4 C B 128 -1.670 1.300 22.038 1.00 28.04 C
ATOM 19 N4 C B 128 -2.373 1.635 23.127 1.00 28.71 N
ATOM 20 C5 C B 128 -0.413 0.637 22.165 1.00 28.60 C
ATOM 21 C6 C B 128 0.245 0.334 21.032 1.00 31.25 C
ATOM 22 P A B 129 4.157 3.286 18.461 1.00 35.30 P
ATOM 23 OP1 A B 129 5.393 3.565 17.688 1.00 43.02 O
ATOM 24 OP2 A B 129 4.274 3.162 19.935 1.00 38.85 O
ATOM 25 O5' A B 129 3.021 4.323 18.081 1.00 32.71 O
TER
ATOM 2 P C A 71 11.197 -7.310 15.919 1.00 34.01 P
ATOM 3 OP1 C A 71 10.748 -8.052 17.123 1.00 31.52 O
ATOM 4 OP2 C A 71 10.690 -7.659 14.577 1.00 34.79 O
ATOM 5 O5' C A 71 10.968 -5.758 16.209 1.00 32.37 O
ATOM 6 C5' C A 71 11.466 -4.740 15.344 1.00 35.06 C
ATOM 7 C4' C A 71 10.887 -3.382 15.664 1.00 35.43 C
ATOM 8 O4' C A 71 9.460 -3.389 15.381 1.00 37.45 O
ATOM 9 C3' C A 71 11.037 -2.898 17.111 1.00 37.35 C
ATOM 10 O3' C A 71 11.211 -1.482 17.109 1.00 37.46 O
ATOM 11 C2' C A 71 9.661 -3.209 17.701 1.00 37.69 C
ATOM 12 O2' C A 71 9.301 -2.451 18.838 1.00 37.83 O
ATOM 13 C1' C A 71 8.763 -2.887 16.508 1.00 39.35 C
ATOM 14 N1 C A 71 7.394 -3.455 16.606 1.00 45.04 N
ATOM 15 C2 C A 71 6.296 -2.661 16.234 1.00 46.85 C
ATOM 16 O2 C A 71 6.489 -1.506 15.822 1.00 45.80 O
ATOM 17 N3 C A 71 5.044 -3.173 16.333 1.00 47.47 N
ATOM 18 C4 C A 71 4.865 -4.419 16.783 1.00 46.22 C
ATOM 19 N4 C A 71 3.615 -4.883 16.860 1.00 45.44 N
ATOM 20 C5 C A 71 5.960 -5.242 17.177 1.00 44.47 C
ATOM 21 C6 C A 71 7.193 -4.727 17.075 1.00 43.01 C
ATOM 22 P A A 72 12.628 -0.722 17.216 1.00 38.62 P
ATOM 23 OP1 A A 72 12.261 0.497 17.980 1.00 43.72 O
ATOM 24 OP2 A A 72 13.163 -0.595 15.837 1.00 34.56 O
ATOM 25 O5' A A 72 13.598 -1.616 18.094 1.00 31.08 O
TER
ATOM 1 O3' C B 127 3.984 -2.486 21.924 1.00 33.97 O
ATOM 2 P C B 128 4.394 -0.943 21.821 1.00 32.04 P
ATOM 3 OP1 C B 128 5.844 -1.056 21.468 1.00 35.42 O
ATOM 4 OP2 C B 128 4.008 -0.166 23.025 1.00 30.93 O
ATOM 5 O5' C B 128 3.503 -0.429 20.613 1.00 31.77 O
ATOM 6 C5' C B 128 3.632 -0.972 19.312 1.00 34.49 C
ATOM 7 C4' C B 128 2.643 -0.301 18.402 1.00 34.19 C
ATOM 8 O4' C B 128 1.302 -0.723 18.759 1.00 32.57 O
ATOM 9 C3' C B 128 2.571 1.214 18.524 1.00 34.05 C
ATOM 10 O3' C B 128 3.624 1.897 17.862 1.00 36.92 O
ATOM 11 C2' C B 128 1.188 1.513 17.972 1.00 33.63 C
ATOM 12 O2' C B 128 1.174 1.393 16.556 1.00 37.90 O
ATOM 13 C1' C B 128 0.399 0.336 18.544 1.00 29.82 C
ATOM 14 N1 C B 128 -0.284 0.660 19.809 1.00 29.89 N
ATOM 15 C2 C B 128 -1.506 1.307 19.705 1.00 29.51 C
ATOM 16 O2 C B 128 -1.930 1.576 18.559 1.00 32.84 O
ATOM 17 N3 C B 128 -2.182 1.618 20.840 1.00 29.97 N
ATOM 18 C4 C B 128 -1.670 1.300 22.038 1.00 28.04 C
ATOM 19 N4 C B 128 -2.373 1.635 23.127 1.00 28.71 N
ATOM 20 C5 C B 128 -0.413 0.637 22.165 1.00 28.60 C
ATOM 21 C6 C B 128 0.245 0.334 21.032 1.00 31.25 C
ATOM 22 P A B 129 4.157 3.286 18.461 1.00 35.30 P
ATOM 23 OP1 A B 129 5.393 3.565 17.688 1.00 43.02 O
ATOM 24 OP2 A B 129 4.274 3.162 19.935 1.00 38.85 O
ATOM 25 O5' A B 129 3.021 4.323 18.081 1.00 32.71 O
TER
Atoms:
C2: (6.296,-2.661,16.234)
OP1: (10.748,-8.052,17.123)
OP2: (10.690,-7.659,14.577)
C4: (4.865,-4.419,16.783)
O5': (10.968,-5.758,16.209)
C3': (11.037,-2.898,17.111)
C1': (8.763,-2.887,16.508)
O4': (9.460,-3.389,15.381)
C5': (11.466,-4.740,15.344)
P: (11.197,-7.310,15.919)
O2: (6.489,-1.506,15.822)
C4': (10.887,-3.382,15.664)
C2': (9.661,-3.209,17.701)
O2': (9.301,-2.451,18.838)
N1: (7.394,-3.455,16.606)
N3: (5.044,-3.173,16.333)
N4: (3.615,-4.883,16.860)
C6: (7.193,-4.727,17.075)
C5: (5.960,-5.242,17.177)
O3': (11.211,-1.482,17.109)
OP1: (10.748,-8.052,17.123)
OP2: (10.690,-7.659,14.577)
C4: (4.865,-4.419,16.783)
O5': (10.968,-5.758,16.209)
C3': (11.037,-2.898,17.111)
C1': (8.763,-2.887,16.508)
O4': (9.460,-3.389,15.381)
C5': (11.466,-4.740,15.344)
P: (11.197,-7.310,15.919)
O2: (6.489,-1.506,15.822)
C4': (10.887,-3.382,15.664)
C2': (9.661,-3.209,17.701)
O2': (9.301,-2.451,18.838)
N1: (7.394,-3.455,16.606)
N3: (5.044,-3.173,16.333)
N4: (3.615,-4.883,16.860)
C6: (7.193,-4.727,17.075)
C5: (5.960,-5.242,17.177)
O3': (11.211,-1.482,17.109)
C2: (-1.506,1.307,19.705)
OP1: (5.844,-1.056,21.468)
OP2: (4.008,-0.166,23.025)
C4: (-1.670,1.300,22.038)
O5': (3.503,-0.429,20.613)
C3': (2.571,1.214,18.524)
C1': (0.399,0.336,18.544)
O4': (1.302,-0.723,18.759)
C5': (3.632,-0.972,19.312)
P: (4.394,-0.943,21.821)
O2: (-1.930,1.576,18.559)
C4': (2.643,-0.301,18.402)
C2': (1.188,1.513,17.972)
O2': (1.174,1.393,16.556)
N1: (-0.284,0.660,19.809)
N3: (-2.182,1.618,20.840)
N4: (-2.373,1.635,23.127)
C6: (0.245,0.334,21.032)
C5: (-0.413,0.637,22.165)
O3': (3.624,1.897,17.862)
OP1: (5.844,-1.056,21.468)
OP2: (4.008,-0.166,23.025)
C4: (-1.670,1.300,22.038)
O5': (3.503,-0.429,20.613)
C3': (2.571,1.214,18.524)
C1': (0.399,0.336,18.544)
O4': (1.302,-0.723,18.759)
C5': (3.632,-0.972,19.312)
P: (4.394,-0.943,21.821)
O2: (-1.930,1.576,18.559)
C4': (2.643,-0.301,18.402)
C2': (1.188,1.513,17.972)
O2': (1.174,1.393,16.556)
N1: (-0.284,0.660,19.809)
N3: (-2.182,1.618,20.840)
N4: (-2.373,1.635,23.127)
C6: (0.245,0.334,21.032)
C5: (-0.413,0.637,22.165)
O3': (3.624,1.897,17.862)
Image (generated by PyMOL):