Doublet info:
Details
Nucleotide types:
CG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3R8S:A1543:A1733
Extra
PDB:
ATOM 1 O3' A A1542 3.489 -20.326 -6.210 1.00 7.24 O
ATOM 2 P C A1543 2.121 -19.755 -5.603 1.00 7.46 P
ATOM 3 OP1 C A1543 1.984 -18.361 -6.075 1.00 7.46 O
ATOM 4 OP2 C A1543 2.143 -20.011 -4.140 1.00 7.46 O
ATOM 5 O5' C A1543 1.029 -20.661 -6.307 1.00 7.46 O
ATOM 6 C5' C A1543 0.628 -20.392 -7.639 1.00 7.46 C
ATOM 7 C4' C A1543 -0.463 -21.323 -8.094 1.00 7.46 C
ATOM 8 O4' C A1543 0.000 -22.696 -8.032 1.00 7.46 O
ATOM 9 C3' C A1543 -1.725 -21.322 -7.253 1.00 7.46 C
ATOM 10 O3' C A1543 -2.577 -20.221 -7.528 1.00 7.46 O
ATOM 11 C2' C A1543 -2.324 -22.678 -7.593 1.00 7.46 C
ATOM 12 O2' C A1543 -2.937 -22.662 -8.879 1.00 7.46 O
ATOM 13 C1' C A1543 -1.064 -23.540 -7.660 1.00 7.46 C
ATOM 14 N1 C A1543 -0.734 -24.148 -6.352 1.00 7.31 N
ATOM 15 C2 C A1543 -1.111 -25.457 -6.059 1.00 7.31 C
ATOM 16 O2 C A1543 -1.740 -26.079 -6.941 1.00 7.31 O
ATOM 17 N3 C A1543 -0.773 -25.995 -4.856 1.00 7.31 N
ATOM 18 C4 C A1543 -0.091 -25.283 -3.975 1.00 7.31 C
ATOM 19 N4 C A1543 0.239 -25.796 -2.792 1.00 7.31 N
ATOM 20 C5 C A1543 0.294 -23.969 -4.263 1.00 7.31 C
ATOM 21 C6 C A1543 -0.032 -23.448 -5.444 1.00 7.31 C
ATOM 22 P A A1544 -3.870 -19.923 -6.603 1.00 1.98 P
ATOM 23 OP1 A A1544 -4.671 -18.904 -7.336 1.00 1.98 O
ATOM 24 OP2 A A1544 -3.390 -19.606 -5.215 1.00 1.98 O
ATOM 25 O5' A A1544 -4.645 -21.315 -6.596 1.00 1.98 O
TER
ATOM 1 O3' A B1732 9.663 -16.226 -16.355 1.00 27.53 O
ATOM 2 P G B1733 8.418 -16.975 -17.044 1.00 25.06 P
ATOM 3 OP1 G B1733 8.919 -17.640 -18.274 1.00 25.06 O
ATOM 4 OP2 G B1733 7.315 -15.958 -17.161 1.00 25.06 O
ATOM 5 O5' G B1733 8.026 -18.079 -15.968 1.00 25.06 O
ATOM 6 C5' G B1733 9.014 -18.877 -15.334 1.00 25.06 C
ATOM 7 C4' G B1733 8.439 -19.586 -14.141 1.00 25.06 C
ATOM 8 O4' G B1733 8.286 -18.647 -13.043 1.00 25.06 O
ATOM 9 C3' G B1733 7.045 -20.140 -14.335 1.00 25.06 C
ATOM 10 O3' G B1733 7.026 -21.380 -14.991 1.00 25.06 O
ATOM 11 C2' G B1733 6.496 -20.188 -12.926 1.00 25.06 C
ATOM 12 O2' G B1733 7.001 -21.308 -12.223 1.00 25.06 O
ATOM 13 C1' G B1733 7.099 -18.922 -12.335 1.00 25.06 C
ATOM 14 N9 G B1733 6.187 -17.781 -12.486 1.00 25.05 N
ATOM 15 C8 G B1733 6.173 -16.747 -13.392 1.00 25.05 C
ATOM 16 N7 G B1733 5.164 -15.928 -13.222 1.00 25.05 N
ATOM 17 C5 G B1733 4.468 -16.472 -12.145 1.00 25.05 C
ATOM 18 C6 G B1733 3.291 -16.053 -11.473 1.00 25.05 C
ATOM 19 O6 G B1733 2.575 -15.074 -11.694 1.00 25.05 O
ATOM 20 N1 G B1733 2.975 -16.927 -10.442 1.00 25.05 N
ATOM 21 C2 G B1733 3.673 -18.054 -10.082 1.00 25.05 C
ATOM 22 N2 G B1733 3.194 -18.770 -9.047 1.00 25.05 N
ATOM 23 N3 G B1733 4.771 -18.450 -10.692 1.00 25.05 N
ATOM 24 C4 G B1733 5.096 -17.617 -11.698 1.00 25.05 C
ATOM 25 P C B1734 5.674 -21.859 -15.697 1.00 16.09 P
ATOM 26 OP1 C B1734 5.895 -23.241 -16.193 1.00 16.09 O
ATOM 27 OP2 C B1734 5.296 -20.800 -16.682 1.00 16.09 O
ATOM 28 O5' C B1734 4.635 -21.870 -14.474 1.00 16.09 O
TER
ATOM 2 P C A1543 2.121 -19.755 -5.603 1.00 7.46 P
ATOM 3 OP1 C A1543 1.984 -18.361 -6.075 1.00 7.46 O
ATOM 4 OP2 C A1543 2.143 -20.011 -4.140 1.00 7.46 O
ATOM 5 O5' C A1543 1.029 -20.661 -6.307 1.00 7.46 O
ATOM 6 C5' C A1543 0.628 -20.392 -7.639 1.00 7.46 C
ATOM 7 C4' C A1543 -0.463 -21.323 -8.094 1.00 7.46 C
ATOM 8 O4' C A1543 0.000 -22.696 -8.032 1.00 7.46 O
ATOM 9 C3' C A1543 -1.725 -21.322 -7.253 1.00 7.46 C
ATOM 10 O3' C A1543 -2.577 -20.221 -7.528 1.00 7.46 O
ATOM 11 C2' C A1543 -2.324 -22.678 -7.593 1.00 7.46 C
ATOM 12 O2' C A1543 -2.937 -22.662 -8.879 1.00 7.46 O
ATOM 13 C1' C A1543 -1.064 -23.540 -7.660 1.00 7.46 C
ATOM 14 N1 C A1543 -0.734 -24.148 -6.352 1.00 7.31 N
ATOM 15 C2 C A1543 -1.111 -25.457 -6.059 1.00 7.31 C
ATOM 16 O2 C A1543 -1.740 -26.079 -6.941 1.00 7.31 O
ATOM 17 N3 C A1543 -0.773 -25.995 -4.856 1.00 7.31 N
ATOM 18 C4 C A1543 -0.091 -25.283 -3.975 1.00 7.31 C
ATOM 19 N4 C A1543 0.239 -25.796 -2.792 1.00 7.31 N
ATOM 20 C5 C A1543 0.294 -23.969 -4.263 1.00 7.31 C
ATOM 21 C6 C A1543 -0.032 -23.448 -5.444 1.00 7.31 C
ATOM 22 P A A1544 -3.870 -19.923 -6.603 1.00 1.98 P
ATOM 23 OP1 A A1544 -4.671 -18.904 -7.336 1.00 1.98 O
ATOM 24 OP2 A A1544 -3.390 -19.606 -5.215 1.00 1.98 O
ATOM 25 O5' A A1544 -4.645 -21.315 -6.596 1.00 1.98 O
TER
ATOM 1 O3' A B1732 9.663 -16.226 -16.355 1.00 27.53 O
ATOM 2 P G B1733 8.418 -16.975 -17.044 1.00 25.06 P
ATOM 3 OP1 G B1733 8.919 -17.640 -18.274 1.00 25.06 O
ATOM 4 OP2 G B1733 7.315 -15.958 -17.161 1.00 25.06 O
ATOM 5 O5' G B1733 8.026 -18.079 -15.968 1.00 25.06 O
ATOM 6 C5' G B1733 9.014 -18.877 -15.334 1.00 25.06 C
ATOM 7 C4' G B1733 8.439 -19.586 -14.141 1.00 25.06 C
ATOM 8 O4' G B1733 8.286 -18.647 -13.043 1.00 25.06 O
ATOM 9 C3' G B1733 7.045 -20.140 -14.335 1.00 25.06 C
ATOM 10 O3' G B1733 7.026 -21.380 -14.991 1.00 25.06 O
ATOM 11 C2' G B1733 6.496 -20.188 -12.926 1.00 25.06 C
ATOM 12 O2' G B1733 7.001 -21.308 -12.223 1.00 25.06 O
ATOM 13 C1' G B1733 7.099 -18.922 -12.335 1.00 25.06 C
ATOM 14 N9 G B1733 6.187 -17.781 -12.486 1.00 25.05 N
ATOM 15 C8 G B1733 6.173 -16.747 -13.392 1.00 25.05 C
ATOM 16 N7 G B1733 5.164 -15.928 -13.222 1.00 25.05 N
ATOM 17 C5 G B1733 4.468 -16.472 -12.145 1.00 25.05 C
ATOM 18 C6 G B1733 3.291 -16.053 -11.473 1.00 25.05 C
ATOM 19 O6 G B1733 2.575 -15.074 -11.694 1.00 25.05 O
ATOM 20 N1 G B1733 2.975 -16.927 -10.442 1.00 25.05 N
ATOM 21 C2 G B1733 3.673 -18.054 -10.082 1.00 25.05 C
ATOM 22 N2 G B1733 3.194 -18.770 -9.047 1.00 25.05 N
ATOM 23 N3 G B1733 4.771 -18.450 -10.692 1.00 25.05 N
ATOM 24 C4 G B1733 5.096 -17.617 -11.698 1.00 25.05 C
ATOM 25 P C B1734 5.674 -21.859 -15.697 1.00 16.09 P
ATOM 26 OP1 C B1734 5.895 -23.241 -16.193 1.00 16.09 O
ATOM 27 OP2 C B1734 5.296 -20.800 -16.682 1.00 16.09 O
ATOM 28 O5' C B1734 4.635 -21.870 -14.474 1.00 16.09 O
TER
Atoms:
C2: (-1.111,-25.457,-6.059)
OP1: (1.984,-18.361,-6.075)
OP2: (2.143,-20.011,-4.140)
C4: (-0.091,-25.283,-3.975)
O5': (1.029,-20.661,-6.307)
C3': (-1.725,-21.322,-7.253)
C1': (-1.064,-23.540,-7.660)
O4': (0.000,-22.696,-8.032)
C5': (0.628,-20.392,-7.639)
P: (2.121,-19.755,-5.603)
O2: (-1.740,-26.079,-6.941)
C4': (-0.463,-21.323,-8.094)
C2': (-2.324,-22.678,-7.593)
O2': (-2.937,-22.662,-8.879)
N1: (-0.734,-24.148,-6.352)
N3: (-0.773,-25.995,-4.856)
N4: (0.239,-25.796,-2.792)
C6: (-0.032,-23.448,-5.444)
C5: (0.294,-23.969,-4.263)
O3': (-2.577,-20.221,-7.528)
OP1: (1.984,-18.361,-6.075)
OP2: (2.143,-20.011,-4.140)
C4: (-0.091,-25.283,-3.975)
O5': (1.029,-20.661,-6.307)
C3': (-1.725,-21.322,-7.253)
C1': (-1.064,-23.540,-7.660)
O4': (0.000,-22.696,-8.032)
C5': (0.628,-20.392,-7.639)
P: (2.121,-19.755,-5.603)
O2: (-1.740,-26.079,-6.941)
C4': (-0.463,-21.323,-8.094)
C2': (-2.324,-22.678,-7.593)
O2': (-2.937,-22.662,-8.879)
N1: (-0.734,-24.148,-6.352)
N3: (-0.773,-25.995,-4.856)
N4: (0.239,-25.796,-2.792)
C6: (-0.032,-23.448,-5.444)
C5: (0.294,-23.969,-4.263)
O3': (-2.577,-20.221,-7.528)
OP1: (8.919,-17.640,-18.274)
OP2: (7.315,-15.958,-17.161)
C3': (7.045,-20.140,-14.335)
C1': (7.099,-18.922,-12.335)
C5': (9.014,-18.877,-15.334)
O6: (2.575,-15.074,-11.694)
O4': (8.286,-18.647,-13.043)
C8: (6.173,-16.747,-13.392)
C2: (3.673,-18.054,-10.082)
C6: (3.291,-16.053,-11.473)
C5: (4.468,-16.472,-12.145)
C4: (5.096,-17.617,-11.698)
P: (8.418,-16.975,-17.044)
C4': (8.439,-19.586,-14.141)
C2': (6.496,-20.188,-12.926)
O2': (7.001,-21.308,-12.223)
N1: (2.975,-16.927,-10.442)
N2: (3.194,-18.770,-9.047)
N3: (4.771,-18.450,-10.692)
N7: (5.164,-15.928,-13.222)
N9: (6.187,-17.781,-12.486)
O5': (8.026,-18.079,-15.968)
O3': (7.026,-21.380,-14.991)
OP2: (7.315,-15.958,-17.161)
C3': (7.045,-20.140,-14.335)
C1': (7.099,-18.922,-12.335)
C5': (9.014,-18.877,-15.334)
O6: (2.575,-15.074,-11.694)
O4': (8.286,-18.647,-13.043)
C8: (6.173,-16.747,-13.392)
C2: (3.673,-18.054,-10.082)
C6: (3.291,-16.053,-11.473)
C5: (4.468,-16.472,-12.145)
C4: (5.096,-17.617,-11.698)
P: (8.418,-16.975,-17.044)
C4': (8.439,-19.586,-14.141)
C2': (6.496,-20.188,-12.926)
O2': (7.001,-21.308,-12.223)
N1: (2.975,-16.927,-10.442)
N2: (3.194,-18.770,-9.047)
N3: (4.771,-18.450,-10.692)
N7: (5.164,-15.928,-13.222)
N9: (6.187,-17.781,-12.486)
O5': (8.026,-18.079,-15.968)
O3': (7.026,-21.380,-14.991)
Image (generated by PyMOL):