Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1O9M:B5:A15
Extra
PDB:
ATOM 1 O3' C A 4 3.967 -7.782 7.769 1.00 66.45 O
ATOM 2 P A A 5 3.397 -6.389 8.316 1.00 66.05 P
ATOM 3 OP1 A A 5 2.401 -5.936 7.311 1.00 68.13 O
ATOM 4 OP2 A A 5 4.541 -5.505 8.675 1.00 66.00 O
ATOM 5 O5' A A 5 2.635 -6.799 9.651 1.00 66.35 O
ATOM 6 C5' A A 5 1.670 -7.841 9.633 1.00 66.16 C
ATOM 7 C4' A A 5 1.467 -8.389 11.021 1.00 65.28 C
ATOM 8 O4' A A 5 2.676 -9.052 11.473 1.00 63.00 O
ATOM 9 C3' A A 5 1.212 -7.351 12.096 1.00 65.43 C
ATOM 10 O3' A A 5 -0.137 -6.901 12.080 1.00 67.16 O
ATOM 11 C2' A A 5 1.574 -8.116 13.366 1.00 64.27 C
ATOM 12 O2' A A 5 0.550 -8.973 13.840 1.00 65.17 O
ATOM 13 C1' A A 5 2.766 -8.944 12.884 1.00 62.18 C
ATOM 14 N9 A A 5 4.045 -8.330 13.221 1.00 59.22 N
ATOM 15 C8 A A 5 4.935 -7.689 12.399 1.00 57.62 C
ATOM 16 N7 A A 5 6.008 -7.257 13.018 1.00 56.43 N
ATOM 17 C5 A A 5 5.806 -7.640 14.337 1.00 56.99 C
ATOM 18 C6 A A 5 6.579 -7.480 15.499 1.00 56.75 C
ATOM 19 N6 A A 5 7.763 -6.868 15.522 1.00 57.15 N
ATOM 20 N1 A A 5 6.086 -7.975 16.653 1.00 56.86 N
ATOM 21 C2 A A 5 4.894 -8.585 16.631 1.00 57.50 C
ATOM 22 N3 A A 5 4.076 -8.795 15.606 1.00 56.93 N
ATOM 23 C4 A A 5 4.598 -8.294 14.476 1.00 57.83 C
ATOM 24 P C A 6 -0.460 -5.363 12.420 1.00 68.99 P
ATOM 25 OP1 C A 6 -1.904 -5.136 12.166 1.00 69.77 O
ATOM 26 OP2 C A 6 0.554 -4.509 11.738 1.00 68.27 O
ATOM 27 O5' C A 6 -0.234 -5.265 13.989 1.00 66.27 O
TER
ATOM 1 O3' A B 14 10.220 -10.222 24.676 1.00 75.17 O
ATOM 2 P A B 15 11.019 -11.392 23.880 1.00 77.94 P
ATOM 3 OP1 A B 15 12.081 -12.005 24.717 1.00 77.75 O
ATOM 4 OP2 A B 15 11.385 -10.841 22.547 1.00 79.00 O
ATOM 5 O5' A B 15 9.892 -12.488 23.612 1.00 77.55 O
ATOM 6 C5' A B 15 9.214 -13.105 24.697 1.00 80.07 C
ATOM 7 C4' A B 15 7.782 -13.426 24.324 1.00 81.45 C
ATOM 8 O4' A B 15 6.975 -12.220 24.217 1.00 82.88 O
ATOM 9 C3' A B 15 7.549 -14.093 22.985 1.00 81.39 C
ATOM 10 O3' A B 15 7.929 -15.462 23.017 1.00 81.37 O
ATOM 11 C2' A B 15 6.043 -13.899 22.823 1.00 82.11 C
ATOM 12 O2' A B 15 5.275 -14.803 23.594 1.00 81.85 O
ATOM 13 C1' A B 15 5.863 -12.475 23.362 1.00 83.10 C
ATOM 14 N9 A B 15 5.867 -11.505 22.265 1.00 84.18 N
ATOM 15 C8 A B 15 5.305 -11.693 21.028 1.00 84.47 C
ATOM 16 N7 A B 15 5.485 -10.691 20.205 1.00 85.18 N
ATOM 17 C5 A B 15 6.205 -9.771 20.952 1.00 85.27 C
ATOM 18 C6 A B 15 6.719 -8.502 20.642 1.00 86.01 C
ATOM 19 N6 A B 15 6.606 -7.931 19.439 1.00 86.08 N
ATOM 20 N1 A B 15 7.373 -7.834 21.619 1.00 86.37 N
ATOM 21 C2 A B 15 7.504 -8.418 22.817 1.00 85.92 C
ATOM 22 N3 A B 15 7.078 -9.613 23.224 1.00 85.49 N
ATOM 23 C4 A B 15 6.429 -10.249 22.232 1.00 84.90 C
ATOM 24 P G B 16 8.677 -16.108 21.750 1.00 79.98 P
ATOM 25 OP1 G B 16 8.932 -17.536 22.073 1.00 80.56 O
ATOM 26 OP2 G B 16 9.810 -15.226 21.365 1.00 80.08 O
ATOM 27 O5' G B 16 7.574 -16.043 20.605 1.00 79.34 O
TER
ATOM 2 P A A 5 3.397 -6.389 8.316 1.00 66.05 P
ATOM 3 OP1 A A 5 2.401 -5.936 7.311 1.00 68.13 O
ATOM 4 OP2 A A 5 4.541 -5.505 8.675 1.00 66.00 O
ATOM 5 O5' A A 5 2.635 -6.799 9.651 1.00 66.35 O
ATOM 6 C5' A A 5 1.670 -7.841 9.633 1.00 66.16 C
ATOM 7 C4' A A 5 1.467 -8.389 11.021 1.00 65.28 C
ATOM 8 O4' A A 5 2.676 -9.052 11.473 1.00 63.00 O
ATOM 9 C3' A A 5 1.212 -7.351 12.096 1.00 65.43 C
ATOM 10 O3' A A 5 -0.137 -6.901 12.080 1.00 67.16 O
ATOM 11 C2' A A 5 1.574 -8.116 13.366 1.00 64.27 C
ATOM 12 O2' A A 5 0.550 -8.973 13.840 1.00 65.17 O
ATOM 13 C1' A A 5 2.766 -8.944 12.884 1.00 62.18 C
ATOM 14 N9 A A 5 4.045 -8.330 13.221 1.00 59.22 N
ATOM 15 C8 A A 5 4.935 -7.689 12.399 1.00 57.62 C
ATOM 16 N7 A A 5 6.008 -7.257 13.018 1.00 56.43 N
ATOM 17 C5 A A 5 5.806 -7.640 14.337 1.00 56.99 C
ATOM 18 C6 A A 5 6.579 -7.480 15.499 1.00 56.75 C
ATOM 19 N6 A A 5 7.763 -6.868 15.522 1.00 57.15 N
ATOM 20 N1 A A 5 6.086 -7.975 16.653 1.00 56.86 N
ATOM 21 C2 A A 5 4.894 -8.585 16.631 1.00 57.50 C
ATOM 22 N3 A A 5 4.076 -8.795 15.606 1.00 56.93 N
ATOM 23 C4 A A 5 4.598 -8.294 14.476 1.00 57.83 C
ATOM 24 P C A 6 -0.460 -5.363 12.420 1.00 68.99 P
ATOM 25 OP1 C A 6 -1.904 -5.136 12.166 1.00 69.77 O
ATOM 26 OP2 C A 6 0.554 -4.509 11.738 1.00 68.27 O
ATOM 27 O5' C A 6 -0.234 -5.265 13.989 1.00 66.27 O
TER
ATOM 1 O3' A B 14 10.220 -10.222 24.676 1.00 75.17 O
ATOM 2 P A B 15 11.019 -11.392 23.880 1.00 77.94 P
ATOM 3 OP1 A B 15 12.081 -12.005 24.717 1.00 77.75 O
ATOM 4 OP2 A B 15 11.385 -10.841 22.547 1.00 79.00 O
ATOM 5 O5' A B 15 9.892 -12.488 23.612 1.00 77.55 O
ATOM 6 C5' A B 15 9.214 -13.105 24.697 1.00 80.07 C
ATOM 7 C4' A B 15 7.782 -13.426 24.324 1.00 81.45 C
ATOM 8 O4' A B 15 6.975 -12.220 24.217 1.00 82.88 O
ATOM 9 C3' A B 15 7.549 -14.093 22.985 1.00 81.39 C
ATOM 10 O3' A B 15 7.929 -15.462 23.017 1.00 81.37 O
ATOM 11 C2' A B 15 6.043 -13.899 22.823 1.00 82.11 C
ATOM 12 O2' A B 15 5.275 -14.803 23.594 1.00 81.85 O
ATOM 13 C1' A B 15 5.863 -12.475 23.362 1.00 83.10 C
ATOM 14 N9 A B 15 5.867 -11.505 22.265 1.00 84.18 N
ATOM 15 C8 A B 15 5.305 -11.693 21.028 1.00 84.47 C
ATOM 16 N7 A B 15 5.485 -10.691 20.205 1.00 85.18 N
ATOM 17 C5 A B 15 6.205 -9.771 20.952 1.00 85.27 C
ATOM 18 C6 A B 15 6.719 -8.502 20.642 1.00 86.01 C
ATOM 19 N6 A B 15 6.606 -7.931 19.439 1.00 86.08 N
ATOM 20 N1 A B 15 7.373 -7.834 21.619 1.00 86.37 N
ATOM 21 C2 A B 15 7.504 -8.418 22.817 1.00 85.92 C
ATOM 22 N3 A B 15 7.078 -9.613 23.224 1.00 85.49 N
ATOM 23 C4 A B 15 6.429 -10.249 22.232 1.00 84.90 C
ATOM 24 P G B 16 8.677 -16.108 21.750 1.00 79.98 P
ATOM 25 OP1 G B 16 8.932 -17.536 22.073 1.00 80.56 O
ATOM 26 OP2 G B 16 9.810 -15.226 21.365 1.00 80.08 O
ATOM 27 O5' G B 16 7.574 -16.043 20.605 1.00 79.34 O
TER
Atoms:
OP1: (2.401,-5.936,7.311)
OP2: (4.541,-5.505,8.675)
C3': (1.212,-7.351,12.096)
C1': (2.766,-8.944,12.884)
C5': (1.670,-7.841,9.633)
O4': (2.676,-9.052,11.473)
C8: (4.935,-7.689,12.399)
O2': (0.550,-8.973,13.840)
C6: (6.579,-7.480,15.499)
C5: (5.806,-7.640,14.337)
C4: (4.598,-8.294,14.476)
P: (3.397,-6.389,8.316)
C4': (1.467,-8.389,11.021)
C2': (1.574,-8.116,13.366)
C2: (4.894,-8.585,16.631)
N1: (6.086,-7.975,16.653)
N3: (4.076,-8.795,15.606)
N6: (7.763,-6.868,15.522)
N7: (6.008,-7.257,13.018)
N9: (4.045,-8.330,13.221)
O5': (2.635,-6.799,9.651)
O3': (-0.137,-6.901,12.080)
OP2: (4.541,-5.505,8.675)
C3': (1.212,-7.351,12.096)
C1': (2.766,-8.944,12.884)
C5': (1.670,-7.841,9.633)
O4': (2.676,-9.052,11.473)
C8: (4.935,-7.689,12.399)
O2': (0.550,-8.973,13.840)
C6: (6.579,-7.480,15.499)
C5: (5.806,-7.640,14.337)
C4: (4.598,-8.294,14.476)
P: (3.397,-6.389,8.316)
C4': (1.467,-8.389,11.021)
C2': (1.574,-8.116,13.366)
C2: (4.894,-8.585,16.631)
N1: (6.086,-7.975,16.653)
N3: (4.076,-8.795,15.606)
N6: (7.763,-6.868,15.522)
N7: (6.008,-7.257,13.018)
N9: (4.045,-8.330,13.221)
O5': (2.635,-6.799,9.651)
O3': (-0.137,-6.901,12.080)
OP1: (12.081,-12.005,24.717)
OP2: (11.385,-10.841,22.547)
C3': (7.549,-14.093,22.985)
C1': (5.863,-12.475,23.362)
C5': (9.214,-13.105,24.697)
O4': (6.975,-12.220,24.217)
C8: (5.305,-11.693,21.028)
O2': (5.275,-14.803,23.594)
C6: (6.719,-8.502,20.642)
C5: (6.205,-9.771,20.952)
C4: (6.429,-10.249,22.232)
P: (11.019,-11.392,23.880)
C4': (7.782,-13.426,24.324)
C2': (6.043,-13.899,22.823)
C2: (7.504,-8.418,22.817)
N1: (7.373,-7.834,21.619)
N3: (7.078,-9.613,23.224)
N6: (6.606,-7.931,19.439)
N7: (5.485,-10.691,20.205)
N9: (5.867,-11.505,22.265)
O5': (9.892,-12.488,23.612)
O3': (7.929,-15.462,23.017)
OP2: (11.385,-10.841,22.547)
C3': (7.549,-14.093,22.985)
C1': (5.863,-12.475,23.362)
C5': (9.214,-13.105,24.697)
O4': (6.975,-12.220,24.217)
C8: (5.305,-11.693,21.028)
O2': (5.275,-14.803,23.594)
C6: (6.719,-8.502,20.642)
C5: (6.205,-9.771,20.952)
C4: (6.429,-10.249,22.232)
P: (11.019,-11.392,23.880)
C4': (7.782,-13.426,24.324)
C2': (6.043,-13.899,22.823)
C2: (7.504,-8.418,22.817)
N1: (7.373,-7.834,21.619)
N3: (7.078,-9.613,23.224)
N6: (6.606,-7.931,19.439)
N7: (5.485,-10.691,20.205)
N9: (5.867,-11.505,22.265)
O5': (9.892,-12.488,23.612)
O3': (7.929,-15.462,23.017)
Image (generated by PyMOL):