Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:11779:11439
Extra
PDB:
ATOM 1 O3' U A1778 40.977 34.578 123.856 1.00 50.94 O
ATOM 2 P A A1779 40.764 34.742 122.305 1.00 55.50 P
ATOM 3 OP1 A A1779 39.360 34.985 122.090 1.00 55.47 O
ATOM 4 OP2 A A1779 41.349 33.569 121.670 1.00 54.93 O
ATOM 5 O5' A A1779 41.619 36.029 121.939 1.00 55.76 O
ATOM 6 C5' A A1779 42.777 36.400 122.666 1.00 56.17 C
ATOM 7 C4' A A1779 43.909 36.910 121.783 1.00 56.03 C
ATOM 8 O4' A A1779 44.926 35.898 121.700 1.00 55.73 O
ATOM 9 C3' A A1779 43.605 37.235 120.319 1.00 55.58 C
ATOM 10 O3' A A1779 43.063 38.517 120.117 1.00 55.89 O
ATOM 11 C2' A A1779 44.953 37.095 119.674 1.00 55.35 C
ATOM 12 O2' A A1779 45.735 38.223 119.968 1.00 55.83 O
ATOM 13 C1' A A1779 45.521 35.914 120.429 1.00 55.28 C
ATOM 14 N9 A A1779 45.190 34.664 119.768 1.00 54.66 N
ATOM 15 C8 A A1779 44.418 33.675 120.253 1.00 54.53 C
ATOM 16 N7 A A1779 44.265 32.676 119.422 1.00 53.94 N
ATOM 17 C5 A A1779 44.996 33.063 118.321 1.00 53.69 C
ATOM 18 C6 A A1779 45.252 32.432 117.096 1.00 53.10 C
ATOM 19 N6 A A1779 44.788 31.235 116.740 1.00 52.63 N
ATOM 20 N1 A A1779 46.035 33.103 116.247 1.00 53.02 N
ATOM 21 C2 A A1779 46.519 34.309 116.565 1.00 53.49 C
ATOM 22 N3 A A1779 46.354 34.998 117.693 1.00 54.07 N
ATOM 23 C4 A A1779 45.571 34.300 118.531 1.00 54.13 C
ATOM 24 P C A1780 41.511 38.651 119.838 1.00 48.50 P
ATOM 25 OP1 C A1780 41.030 39.778 120.589 1.00 49.13 O
ATOM 26 OP2 C A1780 40.945 37.368 120.128 1.00 48.20 O
ATOM 27 O5' C A1780 41.377 38.906 118.262 1.00 48.02 O
TER
ATOM 1 O3' U B1438 51.956 33.766 113.515 1.00 48.36 O
ATOM 2 P U B1439 52.435 34.367 112.119 1.00 52.36 P
ATOM 3 OP1 U B1439 53.035 33.233 111.336 1.00 51.83 O
ATOM 4 OP2 U B1439 53.274 35.576 112.428 1.00 52.86 O
ATOM 5 O5' U B1439 51.059 34.824 111.466 1.00 52.20 O
ATOM 6 C5' U B1439 50.945 35.063 110.078 1.00 51.83 C
ATOM 7 C4' U B1439 49.523 35.026 109.661 1.00 51.62 C
ATOM 8 O4' U B1439 48.956 33.742 110.022 1.00 51.34 O
ATOM 9 C3' U B1439 48.623 36.016 110.364 1.00 52.08 C
ATOM 10 O3' U B1439 48.676 37.307 109.803 1.00 52.30 O
ATOM 11 C2' U B1439 47.250 35.374 110.254 1.00 51.80 C
ATOM 12 O2' U B1439 46.663 35.693 109.023 1.00 51.51 O
ATOM 13 C1' U B1439 47.576 33.895 110.233 1.00 51.39 C
ATOM 14 N1 U B1439 47.144 33.212 111.461 1.00 51.55 N
ATOM 15 C2 U B1439 46.636 31.996 111.088 1.00 51.09 C
ATOM 16 O2 U B1439 46.779 31.740 109.924 1.00 50.67 O
ATOM 17 N3 U B1439 46.082 31.104 111.952 1.00 51.10 N
ATOM 18 C4 U B1439 45.958 31.421 113.254 1.00 51.58 C
ATOM 19 O4 U B1439 45.454 30.565 114.018 1.00 51.59 O
ATOM 20 C5 U B1439 46.494 32.757 113.551 1.00 52.06 C
ATOM 21 C6 U B1439 47.045 33.659 112.720 1.00 52.07 C
ATOM 22 P C B1440 48.749 38.587 110.765 1.00 55.29 P
ATOM 23 OP1 C B1440 48.142 39.759 110.013 1.00 55.41 O
ATOM 24 OP2 C B1440 50.152 38.705 111.230 1.00 55.54 O
ATOM 25 O5' C B1440 47.827 38.159 111.990 1.00 55.50 O
TER
ATOM 2 P A A1779 40.764 34.742 122.305 1.00 55.50 P
ATOM 3 OP1 A A1779 39.360 34.985 122.090 1.00 55.47 O
ATOM 4 OP2 A A1779 41.349 33.569 121.670 1.00 54.93 O
ATOM 5 O5' A A1779 41.619 36.029 121.939 1.00 55.76 O
ATOM 6 C5' A A1779 42.777 36.400 122.666 1.00 56.17 C
ATOM 7 C4' A A1779 43.909 36.910 121.783 1.00 56.03 C
ATOM 8 O4' A A1779 44.926 35.898 121.700 1.00 55.73 O
ATOM 9 C3' A A1779 43.605 37.235 120.319 1.00 55.58 C
ATOM 10 O3' A A1779 43.063 38.517 120.117 1.00 55.89 O
ATOM 11 C2' A A1779 44.953 37.095 119.674 1.00 55.35 C
ATOM 12 O2' A A1779 45.735 38.223 119.968 1.00 55.83 O
ATOM 13 C1' A A1779 45.521 35.914 120.429 1.00 55.28 C
ATOM 14 N9 A A1779 45.190 34.664 119.768 1.00 54.66 N
ATOM 15 C8 A A1779 44.418 33.675 120.253 1.00 54.53 C
ATOM 16 N7 A A1779 44.265 32.676 119.422 1.00 53.94 N
ATOM 17 C5 A A1779 44.996 33.063 118.321 1.00 53.69 C
ATOM 18 C6 A A1779 45.252 32.432 117.096 1.00 53.10 C
ATOM 19 N6 A A1779 44.788 31.235 116.740 1.00 52.63 N
ATOM 20 N1 A A1779 46.035 33.103 116.247 1.00 53.02 N
ATOM 21 C2 A A1779 46.519 34.309 116.565 1.00 53.49 C
ATOM 22 N3 A A1779 46.354 34.998 117.693 1.00 54.07 N
ATOM 23 C4 A A1779 45.571 34.300 118.531 1.00 54.13 C
ATOM 24 P C A1780 41.511 38.651 119.838 1.00 48.50 P
ATOM 25 OP1 C A1780 41.030 39.778 120.589 1.00 49.13 O
ATOM 26 OP2 C A1780 40.945 37.368 120.128 1.00 48.20 O
ATOM 27 O5' C A1780 41.377 38.906 118.262 1.00 48.02 O
TER
ATOM 1 O3' U B1438 51.956 33.766 113.515 1.00 48.36 O
ATOM 2 P U B1439 52.435 34.367 112.119 1.00 52.36 P
ATOM 3 OP1 U B1439 53.035 33.233 111.336 1.00 51.83 O
ATOM 4 OP2 U B1439 53.274 35.576 112.428 1.00 52.86 O
ATOM 5 O5' U B1439 51.059 34.824 111.466 1.00 52.20 O
ATOM 6 C5' U B1439 50.945 35.063 110.078 1.00 51.83 C
ATOM 7 C4' U B1439 49.523 35.026 109.661 1.00 51.62 C
ATOM 8 O4' U B1439 48.956 33.742 110.022 1.00 51.34 O
ATOM 9 C3' U B1439 48.623 36.016 110.364 1.00 52.08 C
ATOM 10 O3' U B1439 48.676 37.307 109.803 1.00 52.30 O
ATOM 11 C2' U B1439 47.250 35.374 110.254 1.00 51.80 C
ATOM 12 O2' U B1439 46.663 35.693 109.023 1.00 51.51 O
ATOM 13 C1' U B1439 47.576 33.895 110.233 1.00 51.39 C
ATOM 14 N1 U B1439 47.144 33.212 111.461 1.00 51.55 N
ATOM 15 C2 U B1439 46.636 31.996 111.088 1.00 51.09 C
ATOM 16 O2 U B1439 46.779 31.740 109.924 1.00 50.67 O
ATOM 17 N3 U B1439 46.082 31.104 111.952 1.00 51.10 N
ATOM 18 C4 U B1439 45.958 31.421 113.254 1.00 51.58 C
ATOM 19 O4 U B1439 45.454 30.565 114.018 1.00 51.59 O
ATOM 20 C5 U B1439 46.494 32.757 113.551 1.00 52.06 C
ATOM 21 C6 U B1439 47.045 33.659 112.720 1.00 52.07 C
ATOM 22 P C B1440 48.749 38.587 110.765 1.00 55.29 P
ATOM 23 OP1 C B1440 48.142 39.759 110.013 1.00 55.41 O
ATOM 24 OP2 C B1440 50.152 38.705 111.230 1.00 55.54 O
ATOM 25 O5' C B1440 47.827 38.159 111.990 1.00 55.50 O
TER
Atoms:
OP1: (39.360,34.985,122.090)
OP2: (41.349,33.569,121.670)
C3': (43.605,37.235,120.319)
C1': (45.521,35.914,120.429)
C5': (42.777,36.400,122.666)
O4': (44.926,35.898,121.700)
C8: (44.418,33.675,120.253)
O2': (45.735,38.223,119.968)
C6: (45.252,32.432,117.096)
C5: (44.996,33.063,118.321)
C4: (45.571,34.300,118.531)
P: (40.764,34.742,122.305)
C4': (43.909,36.910,121.783)
C2': (44.953,37.095,119.674)
C2: (46.519,34.309,116.565)
N1: (46.035,33.103,116.247)
N3: (46.354,34.998,117.693)
N6: (44.788,31.235,116.740)
N7: (44.265,32.676,119.422)
N9: (45.190,34.664,119.768)
O5': (41.619,36.029,121.939)
O3': (43.063,38.517,120.117)
OP2: (41.349,33.569,121.670)
C3': (43.605,37.235,120.319)
C1': (45.521,35.914,120.429)
C5': (42.777,36.400,122.666)
O4': (44.926,35.898,121.700)
C8: (44.418,33.675,120.253)
O2': (45.735,38.223,119.968)
C6: (45.252,32.432,117.096)
C5: (44.996,33.063,118.321)
C4: (45.571,34.300,118.531)
P: (40.764,34.742,122.305)
C4': (43.909,36.910,121.783)
C2': (44.953,37.095,119.674)
C2: (46.519,34.309,116.565)
N1: (46.035,33.103,116.247)
N3: (46.354,34.998,117.693)
N6: (44.788,31.235,116.740)
N7: (44.265,32.676,119.422)
N9: (45.190,34.664,119.768)
O5': (41.619,36.029,121.939)
O3': (43.063,38.517,120.117)
C4: (45.958,31.421,113.254)
N3: (46.082,31.104,111.952)
OP1: (53.035,33.233,111.336)
OP2: (53.274,35.576,112.428)
C2: (46.636,31.996,111.088)
C1': (47.576,33.895,110.233)
C3': (48.623,36.016,110.364)
O5': (51.059,34.824,111.466)
O4': (48.956,33.742,110.022)
C5': (50.945,35.063,110.078)
P: (52.435,34.367,112.119)
C4': (49.523,35.026,109.661)
C2': (47.250,35.374,110.254)
O2': (46.663,35.693,109.023)
N1: (47.144,33.212,111.461)
O4: (45.454,30.565,114.018)
O2: (46.779,31.740,109.924)
C6: (47.045,33.659,112.720)
C5: (46.494,32.757,113.551)
O3': (48.676,37.307,109.803)
N3: (46.082,31.104,111.952)
OP1: (53.035,33.233,111.336)
OP2: (53.274,35.576,112.428)
C2: (46.636,31.996,111.088)
C1': (47.576,33.895,110.233)
C3': (48.623,36.016,110.364)
O5': (51.059,34.824,111.466)
O4': (48.956,33.742,110.022)
C5': (50.945,35.063,110.078)
P: (52.435,34.367,112.119)
C4': (49.523,35.026,109.661)
C2': (47.250,35.374,110.254)
O2': (46.663,35.693,109.023)
N1: (47.144,33.212,111.461)
O4: (45.454,30.565,114.018)
O2: (46.779,31.740,109.924)
C6: (47.045,33.659,112.720)
C5: (46.494,32.757,113.551)
O3': (48.676,37.307,109.803)
Image (generated by PyMOL):