Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIT:924:923
Extra
PDB:
ATOM 1 O3' U A 23 61.581 1.767 100.027 1.00121.08 O
ATOM 2 P G A 24 61.892 3.178 99.325 1.00115.47 P
ATOM 3 OP1 G A 24 62.694 2.903 98.101 1.00115.53 O
ATOM 4 OP2 G A 24 62.425 4.104 100.358 1.00115.62 O
ATOM 5 O5' G A 24 60.455 3.708 98.890 1.00110.40 O
ATOM 6 C5' G A 24 59.899 3.397 97.597 1.00102.63 C
ATOM 7 C4' G A 24 58.852 4.421 97.235 1.00 96.52 C
ATOM 8 O4' G A 24 57.785 4.356 98.219 1.00 95.87 O
ATOM 9 C3' G A 24 59.339 5.860 97.301 1.00 92.49 C
ATOM 10 O3' G A 24 59.999 6.267 96.109 1.00 86.33 O
ATOM 11 C2' G A 24 58.058 6.624 97.599 1.00 92.61 C
ATOM 12 O2' G A 24 57.229 6.792 96.466 1.00 91.58 O
ATOM 13 C1' G A 24 57.385 5.667 98.584 1.00 93.53 C
ATOM 14 N9 G A 24 57.793 5.896 99.970 1.00 93.25 N
ATOM 15 C8 G A 24 58.517 5.052 100.785 1.00 92.60 C
ATOM 16 N7 G A 24 58.713 5.536 101.981 1.00 92.10 N
ATOM 17 C5 G A 24 58.081 6.772 101.957 1.00 92.86 C
ATOM 18 C6 G A 24 57.945 7.759 102.970 1.00 92.81 C
ATOM 19 O6 G A 24 58.347 7.729 104.135 1.00 92.63 O
ATOM 20 N1 G A 24 57.245 8.869 102.510 1.00 93.37 N
ATOM 21 C2 G A 24 56.731 9.011 101.245 1.00 93.82 C
ATOM 22 N2 G A 24 56.096 10.160 100.987 1.00 94.04 N
ATOM 23 N3 G A 24 56.835 8.096 100.299 1.00 93.75 N
ATOM 24 C4 G A 24 57.518 7.011 100.720 1.00 93.27 C
ATOM 25 P C A 25 61.278 7.236 96.201 1.00 80.65 P
ATOM 26 OP1 C A 25 61.776 7.423 94.820 1.00 80.72 O
ATOM 27 OP2 C A 25 62.203 6.742 97.252 1.00 81.18 O
ATOM 28 O5' C A 25 60.664 8.614 96.703 1.00 78.47 O
TER
ATOM 1 O3' U B 22 60.028 1.499 103.573 1.00132.27 O
ATOM 2 P U B 23 58.631 0.985 102.960 1.00134.15 P
ATOM 3 OP1 U B 23 57.578 1.897 103.492 1.00133.72 O
ATOM 4 OP2 U B 23 58.518 -0.485 103.191 1.00133.85 O
ATOM 5 O5' U B 23 58.783 1.267 101.392 1.00133.02 O
ATOM 6 C5' U B 23 58.770 0.191 100.423 1.00130.82 C
ATOM 7 C4' U B 23 60.184 -0.242 100.103 1.00129.77 C
ATOM 8 O4' U B 23 60.159 -1.461 99.314 1.00131.56 O
ATOM 9 C3' U B 23 61.027 0.703 99.260 1.00127.72 C
ATOM 10 O3' U B 23 61.581 1.767 100.027 1.00121.08 O
ATOM 11 C2' U B 23 62.117 -0.225 98.728 1.00129.92 C
ATOM 12 O2' U B 23 63.165 -0.457 99.653 1.00128.82 O
ATOM 13 C1' U B 23 61.332 -1.525 98.513 1.00132.44 C
ATOM 14 N1 U B 23 60.958 -1.801 97.113 1.00134.86 N
ATOM 15 C2 U B 23 61.758 -2.693 96.399 1.00135.50 C
ATOM 16 O2 U B 23 62.744 -3.240 96.880 1.00135.37 O
ATOM 17 N3 U B 23 61.360 -2.919 95.101 1.00135.76 N
ATOM 18 C4 U B 23 60.276 -2.363 94.450 1.00135.70 C
ATOM 19 O4 U B 23 60.047 -2.680 93.279 1.00135.13 O
ATOM 20 C5 U B 23 59.503 -1.452 95.246 1.00135.58 C
ATOM 21 C6 U B 23 59.859 -1.207 96.516 1.00135.24 C
ATOM 22 P G B 24 61.892 3.178 99.325 1.00115.47 P
ATOM 23 OP1 G B 24 62.694 2.903 98.101 1.00115.53 O
ATOM 24 OP2 G B 24 62.425 4.104 100.358 1.00115.62 O
ATOM 25 O5' G B 24 60.455 3.708 98.890 1.00110.40 O
TER
ATOM 2 P G A 24 61.892 3.178 99.325 1.00115.47 P
ATOM 3 OP1 G A 24 62.694 2.903 98.101 1.00115.53 O
ATOM 4 OP2 G A 24 62.425 4.104 100.358 1.00115.62 O
ATOM 5 O5' G A 24 60.455 3.708 98.890 1.00110.40 O
ATOM 6 C5' G A 24 59.899 3.397 97.597 1.00102.63 C
ATOM 7 C4' G A 24 58.852 4.421 97.235 1.00 96.52 C
ATOM 8 O4' G A 24 57.785 4.356 98.219 1.00 95.87 O
ATOM 9 C3' G A 24 59.339 5.860 97.301 1.00 92.49 C
ATOM 10 O3' G A 24 59.999 6.267 96.109 1.00 86.33 O
ATOM 11 C2' G A 24 58.058 6.624 97.599 1.00 92.61 C
ATOM 12 O2' G A 24 57.229 6.792 96.466 1.00 91.58 O
ATOM 13 C1' G A 24 57.385 5.667 98.584 1.00 93.53 C
ATOM 14 N9 G A 24 57.793 5.896 99.970 1.00 93.25 N
ATOM 15 C8 G A 24 58.517 5.052 100.785 1.00 92.60 C
ATOM 16 N7 G A 24 58.713 5.536 101.981 1.00 92.10 N
ATOM 17 C5 G A 24 58.081 6.772 101.957 1.00 92.86 C
ATOM 18 C6 G A 24 57.945 7.759 102.970 1.00 92.81 C
ATOM 19 O6 G A 24 58.347 7.729 104.135 1.00 92.63 O
ATOM 20 N1 G A 24 57.245 8.869 102.510 1.00 93.37 N
ATOM 21 C2 G A 24 56.731 9.011 101.245 1.00 93.82 C
ATOM 22 N2 G A 24 56.096 10.160 100.987 1.00 94.04 N
ATOM 23 N3 G A 24 56.835 8.096 100.299 1.00 93.75 N
ATOM 24 C4 G A 24 57.518 7.011 100.720 1.00 93.27 C
ATOM 25 P C A 25 61.278 7.236 96.201 1.00 80.65 P
ATOM 26 OP1 C A 25 61.776 7.423 94.820 1.00 80.72 O
ATOM 27 OP2 C A 25 62.203 6.742 97.252 1.00 81.18 O
ATOM 28 O5' C A 25 60.664 8.614 96.703 1.00 78.47 O
TER
ATOM 1 O3' U B 22 60.028 1.499 103.573 1.00132.27 O
ATOM 2 P U B 23 58.631 0.985 102.960 1.00134.15 P
ATOM 3 OP1 U B 23 57.578 1.897 103.492 1.00133.72 O
ATOM 4 OP2 U B 23 58.518 -0.485 103.191 1.00133.85 O
ATOM 5 O5' U B 23 58.783 1.267 101.392 1.00133.02 O
ATOM 6 C5' U B 23 58.770 0.191 100.423 1.00130.82 C
ATOM 7 C4' U B 23 60.184 -0.242 100.103 1.00129.77 C
ATOM 8 O4' U B 23 60.159 -1.461 99.314 1.00131.56 O
ATOM 9 C3' U B 23 61.027 0.703 99.260 1.00127.72 C
ATOM 10 O3' U B 23 61.581 1.767 100.027 1.00121.08 O
ATOM 11 C2' U B 23 62.117 -0.225 98.728 1.00129.92 C
ATOM 12 O2' U B 23 63.165 -0.457 99.653 1.00128.82 O
ATOM 13 C1' U B 23 61.332 -1.525 98.513 1.00132.44 C
ATOM 14 N1 U B 23 60.958 -1.801 97.113 1.00134.86 N
ATOM 15 C2 U B 23 61.758 -2.693 96.399 1.00135.50 C
ATOM 16 O2 U B 23 62.744 -3.240 96.880 1.00135.37 O
ATOM 17 N3 U B 23 61.360 -2.919 95.101 1.00135.76 N
ATOM 18 C4 U B 23 60.276 -2.363 94.450 1.00135.70 C
ATOM 19 O4 U B 23 60.047 -2.680 93.279 1.00135.13 O
ATOM 20 C5 U B 23 59.503 -1.452 95.246 1.00135.58 C
ATOM 21 C6 U B 23 59.859 -1.207 96.516 1.00135.24 C
ATOM 22 P G B 24 61.892 3.178 99.325 1.00115.47 P
ATOM 23 OP1 G B 24 62.694 2.903 98.101 1.00115.53 O
ATOM 24 OP2 G B 24 62.425 4.104 100.358 1.00115.62 O
ATOM 25 O5' G B 24 60.455 3.708 98.890 1.00110.40 O
TER
Atoms:
OP1: (62.694,2.903,98.101)
OP2: (62.425,4.104,100.358)
C3': (59.339,5.860,97.301)
C1': (57.385,5.667,98.584)
C5': (59.899,3.397,97.597)
O6: (58.347,7.729,104.135)
O4': (57.785,4.356,98.219)
C8: (58.517,5.052,100.785)
C2: (56.731,9.011,101.245)
C6: (57.945,7.759,102.970)
C5: (58.081,6.772,101.957)
C4: (57.518,7.011,100.720)
P: (61.892,3.178,99.325)
C4': (58.852,4.421,97.235)
C2': (58.058,6.624,97.599)
O2': (57.229,6.792,96.466)
N1: (57.245,8.869,102.510)
N2: (56.096,10.160,100.987)
N3: (56.835,8.096,100.299)
N7: (58.713,5.536,101.981)
N9: (57.793,5.896,99.970)
O5': (60.455,3.708,98.890)
O3': (59.999,6.267,96.109)
OP2: (62.425,4.104,100.358)
C3': (59.339,5.860,97.301)
C1': (57.385,5.667,98.584)
C5': (59.899,3.397,97.597)
O6: (58.347,7.729,104.135)
O4': (57.785,4.356,98.219)
C8: (58.517,5.052,100.785)
C2: (56.731,9.011,101.245)
C6: (57.945,7.759,102.970)
C5: (58.081,6.772,101.957)
C4: (57.518,7.011,100.720)
P: (61.892,3.178,99.325)
C4': (58.852,4.421,97.235)
C2': (58.058,6.624,97.599)
O2': (57.229,6.792,96.466)
N1: (57.245,8.869,102.510)
N2: (56.096,10.160,100.987)
N3: (56.835,8.096,100.299)
N7: (58.713,5.536,101.981)
N9: (57.793,5.896,99.970)
O5': (60.455,3.708,98.890)
O3': (59.999,6.267,96.109)
C4: (60.276,-2.363,94.450)
N3: (61.360,-2.919,95.101)
OP1: (57.578,1.897,103.492)
OP2: (58.518,-0.485,103.191)
C2: (61.758,-2.693,96.399)
C1': (61.332,-1.525,98.513)
C3': (61.027,0.703,99.260)
O5': (58.783,1.267,101.392)
O4': (60.159,-1.461,99.314)
C5': (58.770,0.191,100.423)
P: (58.631,0.985,102.960)
C4': (60.184,-0.242,100.103)
C2': (62.117,-0.225,98.728)
O2': (63.165,-0.457,99.653)
N1: (60.958,-1.801,97.113)
O4: (60.047,-2.680,93.279)
O2: (62.744,-3.240,96.880)
C6: (59.859,-1.207,96.516)
C5: (59.503,-1.452,95.246)
O3': (61.581,1.767,100.027)
N3: (61.360,-2.919,95.101)
OP1: (57.578,1.897,103.492)
OP2: (58.518,-0.485,103.191)
C2: (61.758,-2.693,96.399)
C1': (61.332,-1.525,98.513)
C3': (61.027,0.703,99.260)
O5': (58.783,1.267,101.392)
O4': (60.159,-1.461,99.314)
C5': (58.770,0.191,100.423)
P: (58.631,0.985,102.960)
C4': (60.184,-0.242,100.103)
C2': (62.117,-0.225,98.728)
O2': (63.165,-0.457,99.653)
N1: (60.958,-1.801,97.113)
O4: (60.047,-2.680,93.279)
O2: (62.744,-3.240,96.880)
C6: (59.859,-1.207,96.516)
C5: (59.503,-1.452,95.246)
O3': (61.581,1.767,100.027)
Image (generated by PyMOL):