Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:924:923
Extra
PDB:
ATOM 1 O3' U A 23 61.835 2.202 100.553 1.00127.43 O
ATOM 2 P G A 24 61.627 3.489 99.614 1.00122.23 P
ATOM 3 OP1 G A 24 62.380 3.240 98.357 1.00122.61 O
ATOM 4 OP2 G A 24 61.918 4.704 100.420 1.00122.11 O
ATOM 5 O5' G A 24 60.068 3.471 99.288 1.00117.75 O
ATOM 6 C5' G A 24 59.584 3.423 97.931 1.00110.46 C
ATOM 7 C4' G A 24 58.652 4.584 97.675 1.00104.68 C
ATOM 8 O4' G A 24 57.605 4.568 98.684 1.00103.42 O
ATOM 9 C3' G A 24 59.284 5.961 97.820 1.00101.06 C
ATOM 10 O3' G A 24 59.961 6.371 96.637 1.00 95.80 O
ATOM 11 C2' G A 24 58.086 6.829 98.177 1.00100.57 C
ATOM 12 O2' G A 24 57.259 7.136 97.072 1.00 99.59 O
ATOM 13 C1' G A 24 57.332 5.891 99.118 1.00101.17 C
ATOM 14 N9 G A 24 57.779 6.021 100.504 1.00100.38 N
ATOM 15 C8 G A 24 58.476 5.102 101.257 1.00100.09 C
ATOM 16 N7 G A 24 58.730 5.517 102.468 1.00 99.71 N
ATOM 17 C5 G A 24 58.165 6.783 102.519 1.00 99.97 C
ATOM 18 C6 G A 24 58.111 7.726 103.577 1.00100.24 C
ATOM 19 O6 G A 24 58.552 7.623 104.725 1.00100.82 O
ATOM 20 N1 G A 24 57.452 8.887 103.192 1.00100.48 N
ATOM 21 C2 G A 24 56.908 9.112 101.952 1.00100.71 C
ATOM 22 N2 G A 24 56.318 10.294 101.771 1.00100.76 N
ATOM 23 N3 G A 24 56.942 8.241 100.963 1.00100.58 N
ATOM 24 C4 G A 24 57.580 7.108 101.313 1.00100.11 C
ATOM 25 P C A 25 61.278 7.285 96.751 1.00 91.15 P
ATOM 26 OP1 C A 25 61.816 7.441 95.379 1.00 91.91 O
ATOM 27 OP2 C A 25 62.156 6.755 97.823 1.00 91.79 O
ATOM 28 O5' C A 25 60.713 8.692 97.229 1.00 88.48 O
TER
ATOM 1 O3' U B 22 60.593 1.677 104.397 1.00135.33 O
ATOM 2 P U B 23 59.119 1.332 103.848 1.00135.97 P
ATOM 3 OP1 U B 23 58.241 2.468 104.247 1.00135.40 O
ATOM 4 OP2 U B 23 58.770 -0.053 104.271 1.00135.81 O
ATOM 5 O5' U B 23 59.280 1.369 102.256 1.00135.85 O
ATOM 6 C5' U B 23 59.474 0.157 101.487 1.00135.32 C
ATOM 7 C4' U B 23 60.937 -0.013 101.126 1.00135.11 C
ATOM 8 O4' U B 23 61.157 -1.343 100.580 1.00137.05 O
ATOM 9 C3' U B 23 61.504 0.910 100.056 1.00133.44 C
ATOM 10 O3' U B 23 61.835 2.202 100.553 1.00127.43 O
ATOM 11 C2' U B 23 62.740 0.143 99.595 1.00135.39 C
ATOM 12 O2' U B 23 63.853 0.280 100.461 1.00134.31 O
ATOM 13 C1' U B 23 62.229 -1.301 99.645 1.00137.94 C
ATOM 14 N1 U B 23 61.752 -1.789 98.338 1.00140.93 N
ATOM 15 C2 U B 23 62.672 -2.437 97.519 1.00142.19 C
ATOM 16 O2 U B 23 63.839 -2.628 97.846 1.00142.58 O
ATOM 17 N3 U B 23 62.175 -2.854 96.304 1.00142.71 N
ATOM 18 C4 U B 23 60.885 -2.698 95.829 1.00142.59 C
ATOM 19 O4 U B 23 60.598 -3.117 94.702 1.00142.56 O
ATOM 20 C5 U B 23 59.994 -2.028 96.732 1.00142.28 C
ATOM 21 C6 U B 23 60.443 -1.608 97.924 1.00141.54 C
ATOM 22 P G B 24 61.627 3.489 99.614 1.00122.23 P
ATOM 23 OP1 G B 24 62.380 3.240 98.357 1.00122.61 O
ATOM 24 OP2 G B 24 61.918 4.704 100.420 1.00122.11 O
ATOM 25 O5' G B 24 60.068 3.471 99.288 1.00117.75 O
TER
ATOM 2 P G A 24 61.627 3.489 99.614 1.00122.23 P
ATOM 3 OP1 G A 24 62.380 3.240 98.357 1.00122.61 O
ATOM 4 OP2 G A 24 61.918 4.704 100.420 1.00122.11 O
ATOM 5 O5' G A 24 60.068 3.471 99.288 1.00117.75 O
ATOM 6 C5' G A 24 59.584 3.423 97.931 1.00110.46 C
ATOM 7 C4' G A 24 58.652 4.584 97.675 1.00104.68 C
ATOM 8 O4' G A 24 57.605 4.568 98.684 1.00103.42 O
ATOM 9 C3' G A 24 59.284 5.961 97.820 1.00101.06 C
ATOM 10 O3' G A 24 59.961 6.371 96.637 1.00 95.80 O
ATOM 11 C2' G A 24 58.086 6.829 98.177 1.00100.57 C
ATOM 12 O2' G A 24 57.259 7.136 97.072 1.00 99.59 O
ATOM 13 C1' G A 24 57.332 5.891 99.118 1.00101.17 C
ATOM 14 N9 G A 24 57.779 6.021 100.504 1.00100.38 N
ATOM 15 C8 G A 24 58.476 5.102 101.257 1.00100.09 C
ATOM 16 N7 G A 24 58.730 5.517 102.468 1.00 99.71 N
ATOM 17 C5 G A 24 58.165 6.783 102.519 1.00 99.97 C
ATOM 18 C6 G A 24 58.111 7.726 103.577 1.00100.24 C
ATOM 19 O6 G A 24 58.552 7.623 104.725 1.00100.82 O
ATOM 20 N1 G A 24 57.452 8.887 103.192 1.00100.48 N
ATOM 21 C2 G A 24 56.908 9.112 101.952 1.00100.71 C
ATOM 22 N2 G A 24 56.318 10.294 101.771 1.00100.76 N
ATOM 23 N3 G A 24 56.942 8.241 100.963 1.00100.58 N
ATOM 24 C4 G A 24 57.580 7.108 101.313 1.00100.11 C
ATOM 25 P C A 25 61.278 7.285 96.751 1.00 91.15 P
ATOM 26 OP1 C A 25 61.816 7.441 95.379 1.00 91.91 O
ATOM 27 OP2 C A 25 62.156 6.755 97.823 1.00 91.79 O
ATOM 28 O5' C A 25 60.713 8.692 97.229 1.00 88.48 O
TER
ATOM 1 O3' U B 22 60.593 1.677 104.397 1.00135.33 O
ATOM 2 P U B 23 59.119 1.332 103.848 1.00135.97 P
ATOM 3 OP1 U B 23 58.241 2.468 104.247 1.00135.40 O
ATOM 4 OP2 U B 23 58.770 -0.053 104.271 1.00135.81 O
ATOM 5 O5' U B 23 59.280 1.369 102.256 1.00135.85 O
ATOM 6 C5' U B 23 59.474 0.157 101.487 1.00135.32 C
ATOM 7 C4' U B 23 60.937 -0.013 101.126 1.00135.11 C
ATOM 8 O4' U B 23 61.157 -1.343 100.580 1.00137.05 O
ATOM 9 C3' U B 23 61.504 0.910 100.056 1.00133.44 C
ATOM 10 O3' U B 23 61.835 2.202 100.553 1.00127.43 O
ATOM 11 C2' U B 23 62.740 0.143 99.595 1.00135.39 C
ATOM 12 O2' U B 23 63.853 0.280 100.461 1.00134.31 O
ATOM 13 C1' U B 23 62.229 -1.301 99.645 1.00137.94 C
ATOM 14 N1 U B 23 61.752 -1.789 98.338 1.00140.93 N
ATOM 15 C2 U B 23 62.672 -2.437 97.519 1.00142.19 C
ATOM 16 O2 U B 23 63.839 -2.628 97.846 1.00142.58 O
ATOM 17 N3 U B 23 62.175 -2.854 96.304 1.00142.71 N
ATOM 18 C4 U B 23 60.885 -2.698 95.829 1.00142.59 C
ATOM 19 O4 U B 23 60.598 -3.117 94.702 1.00142.56 O
ATOM 20 C5 U B 23 59.994 -2.028 96.732 1.00142.28 C
ATOM 21 C6 U B 23 60.443 -1.608 97.924 1.00141.54 C
ATOM 22 P G B 24 61.627 3.489 99.614 1.00122.23 P
ATOM 23 OP1 G B 24 62.380 3.240 98.357 1.00122.61 O
ATOM 24 OP2 G B 24 61.918 4.704 100.420 1.00122.11 O
ATOM 25 O5' G B 24 60.068 3.471 99.288 1.00117.75 O
TER
Atoms:
OP1: (62.380,3.240,98.357)
OP2: (61.918,4.704,100.420)
C3': (59.284,5.961,97.820)
C1': (57.332,5.891,99.118)
C5': (59.584,3.423,97.931)
O6: (58.552,7.623,104.725)
O4': (57.605,4.568,98.684)
C8: (58.476,5.102,101.257)
C2: (56.908,9.112,101.952)
C6: (58.111,7.726,103.577)
C5: (58.165,6.783,102.519)
C4: (57.580,7.108,101.313)
P: (61.627,3.489,99.614)
C4': (58.652,4.584,97.675)
C2': (58.086,6.829,98.177)
O2': (57.259,7.136,97.072)
N1: (57.452,8.887,103.192)
N2: (56.318,10.294,101.771)
N3: (56.942,8.241,100.963)
N7: (58.730,5.517,102.468)
N9: (57.779,6.021,100.504)
O5': (60.068,3.471,99.288)
O3': (59.961,6.371,96.637)
OP2: (61.918,4.704,100.420)
C3': (59.284,5.961,97.820)
C1': (57.332,5.891,99.118)
C5': (59.584,3.423,97.931)
O6: (58.552,7.623,104.725)
O4': (57.605,4.568,98.684)
C8: (58.476,5.102,101.257)
C2: (56.908,9.112,101.952)
C6: (58.111,7.726,103.577)
C5: (58.165,6.783,102.519)
C4: (57.580,7.108,101.313)
P: (61.627,3.489,99.614)
C4': (58.652,4.584,97.675)
C2': (58.086,6.829,98.177)
O2': (57.259,7.136,97.072)
N1: (57.452,8.887,103.192)
N2: (56.318,10.294,101.771)
N3: (56.942,8.241,100.963)
N7: (58.730,5.517,102.468)
N9: (57.779,6.021,100.504)
O5': (60.068,3.471,99.288)
O3': (59.961,6.371,96.637)
C4: (60.885,-2.698,95.829)
N3: (62.175,-2.854,96.304)
OP1: (58.241,2.468,104.247)
OP2: (58.770,-0.053,104.271)
C2: (62.672,-2.437,97.519)
C1': (62.229,-1.301,99.645)
C3': (61.504,0.910,100.056)
O5': (59.280,1.369,102.256)
O4': (61.157,-1.343,100.580)
C5': (59.474,0.157,101.487)
P: (59.119,1.332,103.848)
C4': (60.937,-0.013,101.126)
C2': (62.740,0.143,99.595)
O2': (63.853,0.280,100.461)
N1: (61.752,-1.789,98.338)
O4: (60.598,-3.117,94.702)
O2: (63.839,-2.628,97.846)
C6: (60.443,-1.608,97.924)
C5: (59.994,-2.028,96.732)
O3': (61.835,2.202,100.553)
N3: (62.175,-2.854,96.304)
OP1: (58.241,2.468,104.247)
OP2: (58.770,-0.053,104.271)
C2: (62.672,-2.437,97.519)
C1': (62.229,-1.301,99.645)
C3': (61.504,0.910,100.056)
O5': (59.280,1.369,102.256)
O4': (61.157,-1.343,100.580)
C5': (59.474,0.157,101.487)
P: (59.119,1.332,103.848)
C4': (60.937,-0.013,101.126)
C2': (62.740,0.143,99.595)
O2': (63.853,0.280,100.461)
N1: (61.752,-1.789,98.338)
O4: (60.598,-3.117,94.702)
O2: (63.839,-2.628,97.846)
C6: (60.443,-1.608,97.924)
C5: (59.994,-2.028,96.732)
O3': (61.835,2.202,100.553)
Image (generated by PyMOL):