Doublet info:
Details
Nucleotide types:
CG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5B:2542:2513
Extra
PDB:
ATOM 1 O3' A A 541 -80.847 31.379 19.400 1.00122.64 O
ATOM 2 P C A 542 -80.601 32.986 19.268 1.00111.67 P
ATOM 3 OP1 C A 542 -81.906 33.588 18.866 1.00111.95 O
ATOM 4 OP2 C A 542 -79.427 33.178 18.379 1.00111.79 O
ATOM 5 O5' C A 542 -80.227 33.439 20.784 1.00111.05 O
ATOM 6 C5' C A 542 -80.615 34.726 21.294 1.00110.83 C
ATOM 7 C4' C A 542 -80.424 34.905 22.810 1.00110.27 C
ATOM 8 O4' C A 542 -81.083 36.140 23.172 1.00110.14 O
ATOM 9 C3' C A 542 -81.036 33.848 23.755 1.00110.12 C
ATOM 10 O3' C A 542 -80.420 33.976 25.060 1.00109.57 O
ATOM 11 C2' C A 542 -82.465 34.348 23.864 1.00110.25 C
ATOM 12 O2' C A 542 -83.168 33.870 24.989 1.00110.01 O
ATOM 13 C1' C A 542 -82.249 35.861 23.933 1.00110.08 C
ATOM 14 N1 C A 542 -83.369 36.670 23.374 1.00110.37 N
ATOM 15 C2 C A 542 -83.893 36.439 22.071 1.00110.91 C
ATOM 16 O2 C A 542 -83.440 35.547 21.342 1.00111.17 O
ATOM 17 N3 C A 542 -84.913 37.194 21.581 1.00111.17 N
ATOM 18 C4 C A 542 -85.420 38.169 22.330 1.00110.91 C
ATOM 19 N4 C A 542 -86.420 38.884 21.804 1.00111.19 N
ATOM 20 C5 C A 542 -84.914 38.426 23.649 1.00110.37 C
ATOM 21 C6 C A 542 -83.905 37.680 24.133 1.00110.11 C
ATOM 22 P A A 543 -80.094 32.703 26.030 1.00103.64 P
ATOM 23 OP1 A A 543 -80.178 33.182 27.422 1.00103.13 O
ATOM 24 OP2 A A 543 -78.825 32.112 25.573 1.00103.65 O
ATOM 25 O5' A A 543 -81.269 31.696 25.759 1.00103.98 O
TER
ATOM 1 O3' U B 512 -91.661 45.516 28.132 1.00104.14 O
ATOM 2 P G B 513 -90.711 46.621 27.446 1.00117.86 P
ATOM 3 OP1 G B 513 -91.317 47.949 27.711 1.00117.76 O
ATOM 4 OP2 G B 513 -90.487 46.205 26.041 1.00118.34 O
ATOM 5 O5' G B 513 -89.364 46.476 28.273 1.00117.39 O
ATOM 6 C5' G B 513 -89.388 46.179 29.668 1.00116.94 C
ATOM 7 C4' G B 513 -88.239 45.283 30.069 1.00116.70 C
ATOM 8 O4' G B 513 -88.299 44.059 29.278 1.00117.07 O
ATOM 9 C3' G B 513 -86.852 45.868 29.816 1.00116.54 C
ATOM 10 O3' G B 513 -85.909 45.258 30.720 1.00116.14 O
ATOM 11 C2' G B 513 -86.598 45.396 28.388 1.00117.02 C
ATOM 12 O2' G B 513 -85.255 45.431 27.965 1.00116.97 O
ATOM 13 C1' G B 513 -87.155 43.976 28.452 1.00117.19 C
ATOM 14 N9 G B 513 -87.564 43.442 27.158 1.00117.74 N
ATOM 15 C8 G B 513 -88.422 44.006 26.257 1.00118.13 C
ATOM 16 N7 G B 513 -88.564 43.278 25.191 1.00118.57 N
ATOM 17 C5 G B 513 -87.752 42.178 25.402 1.00118.46 C
ATOM 18 C6 G B 513 -87.492 41.043 24.596 1.00118.79 C
ATOM 19 O6 G B 513 -87.938 40.741 23.483 1.00119.26 O
ATOM 20 N1 G B 513 -86.604 40.182 25.214 1.00118.51 N
ATOM 21 C2 G B 513 -86.010 40.362 26.439 1.00117.99 C
ATOM 22 N2 G B 513 -85.160 39.393 26.842 1.00117.80 N
ATOM 23 N3 G B 513 -86.251 41.417 27.205 1.00117.68 N
ATOM 24 C4 G B 513 -87.125 42.268 26.619 1.00117.95 C
ATOM 25 P A B 514 -84.579 46.046 31.196 1.00106.40 P
ATOM 26 OP1 A B 514 -84.677 46.211 32.678 1.00105.90 O
ATOM 27 OP2 A B 514 -84.447 47.265 30.353 1.00106.58 O
ATOM 28 O5' A B 514 -83.408 45.016 30.828 1.00106.44 O
TER
ATOM 2 P C A 542 -80.601 32.986 19.268 1.00111.67 P
ATOM 3 OP1 C A 542 -81.906 33.588 18.866 1.00111.95 O
ATOM 4 OP2 C A 542 -79.427 33.178 18.379 1.00111.79 O
ATOM 5 O5' C A 542 -80.227 33.439 20.784 1.00111.05 O
ATOM 6 C5' C A 542 -80.615 34.726 21.294 1.00110.83 C
ATOM 7 C4' C A 542 -80.424 34.905 22.810 1.00110.27 C
ATOM 8 O4' C A 542 -81.083 36.140 23.172 1.00110.14 O
ATOM 9 C3' C A 542 -81.036 33.848 23.755 1.00110.12 C
ATOM 10 O3' C A 542 -80.420 33.976 25.060 1.00109.57 O
ATOM 11 C2' C A 542 -82.465 34.348 23.864 1.00110.25 C
ATOM 12 O2' C A 542 -83.168 33.870 24.989 1.00110.01 O
ATOM 13 C1' C A 542 -82.249 35.861 23.933 1.00110.08 C
ATOM 14 N1 C A 542 -83.369 36.670 23.374 1.00110.37 N
ATOM 15 C2 C A 542 -83.893 36.439 22.071 1.00110.91 C
ATOM 16 O2 C A 542 -83.440 35.547 21.342 1.00111.17 O
ATOM 17 N3 C A 542 -84.913 37.194 21.581 1.00111.17 N
ATOM 18 C4 C A 542 -85.420 38.169 22.330 1.00110.91 C
ATOM 19 N4 C A 542 -86.420 38.884 21.804 1.00111.19 N
ATOM 20 C5 C A 542 -84.914 38.426 23.649 1.00110.37 C
ATOM 21 C6 C A 542 -83.905 37.680 24.133 1.00110.11 C
ATOM 22 P A A 543 -80.094 32.703 26.030 1.00103.64 P
ATOM 23 OP1 A A 543 -80.178 33.182 27.422 1.00103.13 O
ATOM 24 OP2 A A 543 -78.825 32.112 25.573 1.00103.65 O
ATOM 25 O5' A A 543 -81.269 31.696 25.759 1.00103.98 O
TER
ATOM 1 O3' U B 512 -91.661 45.516 28.132 1.00104.14 O
ATOM 2 P G B 513 -90.711 46.621 27.446 1.00117.86 P
ATOM 3 OP1 G B 513 -91.317 47.949 27.711 1.00117.76 O
ATOM 4 OP2 G B 513 -90.487 46.205 26.041 1.00118.34 O
ATOM 5 O5' G B 513 -89.364 46.476 28.273 1.00117.39 O
ATOM 6 C5' G B 513 -89.388 46.179 29.668 1.00116.94 C
ATOM 7 C4' G B 513 -88.239 45.283 30.069 1.00116.70 C
ATOM 8 O4' G B 513 -88.299 44.059 29.278 1.00117.07 O
ATOM 9 C3' G B 513 -86.852 45.868 29.816 1.00116.54 C
ATOM 10 O3' G B 513 -85.909 45.258 30.720 1.00116.14 O
ATOM 11 C2' G B 513 -86.598 45.396 28.388 1.00117.02 C
ATOM 12 O2' G B 513 -85.255 45.431 27.965 1.00116.97 O
ATOM 13 C1' G B 513 -87.155 43.976 28.452 1.00117.19 C
ATOM 14 N9 G B 513 -87.564 43.442 27.158 1.00117.74 N
ATOM 15 C8 G B 513 -88.422 44.006 26.257 1.00118.13 C
ATOM 16 N7 G B 513 -88.564 43.278 25.191 1.00118.57 N
ATOM 17 C5 G B 513 -87.752 42.178 25.402 1.00118.46 C
ATOM 18 C6 G B 513 -87.492 41.043 24.596 1.00118.79 C
ATOM 19 O6 G B 513 -87.938 40.741 23.483 1.00119.26 O
ATOM 20 N1 G B 513 -86.604 40.182 25.214 1.00118.51 N
ATOM 21 C2 G B 513 -86.010 40.362 26.439 1.00117.99 C
ATOM 22 N2 G B 513 -85.160 39.393 26.842 1.00117.80 N
ATOM 23 N3 G B 513 -86.251 41.417 27.205 1.00117.68 N
ATOM 24 C4 G B 513 -87.125 42.268 26.619 1.00117.95 C
ATOM 25 P A B 514 -84.579 46.046 31.196 1.00106.40 P
ATOM 26 OP1 A B 514 -84.677 46.211 32.678 1.00105.90 O
ATOM 27 OP2 A B 514 -84.447 47.265 30.353 1.00106.58 O
ATOM 28 O5' A B 514 -83.408 45.016 30.828 1.00106.44 O
TER
Atoms:
C2: (-83.893,36.439,22.071)
OP1: (-81.906,33.588,18.866)
OP2: (-79.427,33.178,18.379)
C4: (-85.420,38.169,22.330)
O5': (-80.227,33.439,20.784)
C3': (-81.036,33.848,23.755)
C1': (-82.249,35.861,23.933)
O4': (-81.083,36.140,23.172)
C5': (-80.615,34.726,21.294)
P: (-80.601,32.986,19.268)
O2: (-83.440,35.547,21.342)
C4': (-80.424,34.905,22.810)
C2': (-82.465,34.348,23.864)
O2': (-83.168,33.870,24.989)
N1: (-83.369,36.670,23.374)
N3: (-84.913,37.194,21.581)
N4: (-86.420,38.884,21.804)
C6: (-83.905,37.680,24.133)
C5: (-84.914,38.426,23.649)
O3': (-80.420,33.976,25.060)
OP1: (-81.906,33.588,18.866)
OP2: (-79.427,33.178,18.379)
C4: (-85.420,38.169,22.330)
O5': (-80.227,33.439,20.784)
C3': (-81.036,33.848,23.755)
C1': (-82.249,35.861,23.933)
O4': (-81.083,36.140,23.172)
C5': (-80.615,34.726,21.294)
P: (-80.601,32.986,19.268)
O2: (-83.440,35.547,21.342)
C4': (-80.424,34.905,22.810)
C2': (-82.465,34.348,23.864)
O2': (-83.168,33.870,24.989)
N1: (-83.369,36.670,23.374)
N3: (-84.913,37.194,21.581)
N4: (-86.420,38.884,21.804)
C6: (-83.905,37.680,24.133)
C5: (-84.914,38.426,23.649)
O3': (-80.420,33.976,25.060)
OP1: (-91.317,47.949,27.711)
OP2: (-90.487,46.205,26.041)
C3': (-86.852,45.868,29.816)
C1': (-87.155,43.976,28.452)
C5': (-89.388,46.179,29.668)
O6: (-87.938,40.741,23.483)
O4': (-88.299,44.059,29.278)
C8: (-88.422,44.006,26.257)
C2: (-86.010,40.362,26.439)
C6: (-87.492,41.043,24.596)
C5: (-87.752,42.178,25.402)
C4: (-87.125,42.268,26.619)
P: (-90.711,46.621,27.446)
C4': (-88.239,45.283,30.069)
C2': (-86.598,45.396,28.388)
O2': (-85.255,45.431,27.965)
N1: (-86.604,40.182,25.214)
N2: (-85.160,39.393,26.842)
N3: (-86.251,41.417,27.205)
N7: (-88.564,43.278,25.191)
N9: (-87.564,43.442,27.158)
O5': (-89.364,46.476,28.273)
O3': (-85.909,45.258,30.720)
OP2: (-90.487,46.205,26.041)
C3': (-86.852,45.868,29.816)
C1': (-87.155,43.976,28.452)
C5': (-89.388,46.179,29.668)
O6: (-87.938,40.741,23.483)
O4': (-88.299,44.059,29.278)
C8: (-88.422,44.006,26.257)
C2: (-86.010,40.362,26.439)
C6: (-87.492,41.043,24.596)
C5: (-87.752,42.178,25.402)
C4: (-87.125,42.268,26.619)
P: (-90.711,46.621,27.446)
C4': (-88.239,45.283,30.069)
C2': (-86.598,45.396,28.388)
O2': (-85.255,45.431,27.965)
N1: (-86.604,40.182,25.214)
N2: (-85.160,39.393,26.842)
N3: (-86.251,41.417,27.205)
N7: (-88.564,43.278,25.191)
N9: (-87.564,43.442,27.158)
O5': (-89.364,46.476,28.273)
O3': (-85.909,45.258,30.720)
Image (generated by PyMOL):