Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2PXD:B17:B18
Extra
PDB:
ATOM 1 O3' U A 16 91.518 -29.028 52.064 1.00 44.81 O
ATOM 2 P C A 17 90.721 -29.709 50.858 1.00 57.46 P
ATOM 3 OP1 C A 17 89.434 -30.179 51.424 1.00 37.88 O
ATOM 4 OP2 C A 17 91.639 -30.683 50.203 1.00 37.16 O
ATOM 5 O5' C A 17 90.447 -28.482 49.880 1.00 57.10 O
ATOM 6 C5' C A 17 89.884 -27.291 50.408 1.00 57.84 C
ATOM 7 C4' C A 17 90.255 -26.081 49.578 1.00 58.32 C
ATOM 8 O4' C A 17 91.680 -26.024 49.330 1.00 55.76 O
ATOM 9 C3' C A 17 89.672 -25.966 48.187 1.00 59.94 C
ATOM 10 O3' C A 17 88.322 -25.529 48.293 1.00 65.59 O
ATOM 11 C2' C A 17 90.556 -24.877 47.579 1.00 57.14 C
ATOM 12 O2' C A 17 90.165 -23.577 47.981 1.00 56.82 O
ATOM 13 C1' C A 17 91.916 -25.195 48.204 1.00 52.26 C
ATOM 14 N1 C A 17 92.848 -25.876 47.298 1.00 26.29 N
ATOM 15 C2 C A 17 93.421 -25.149 46.255 1.00 23.99 C
ATOM 16 O2 C A 17 93.112 -23.957 46.115 1.00 24.12 O
ATOM 17 N3 C A 17 94.294 -25.759 45.426 1.00 22.10 N
ATOM 18 C4 C A 17 94.601 -27.041 45.612 1.00 21.46 C
ATOM 19 N4 C A 17 95.483 -27.601 44.784 1.00 20.67 N
ATOM 20 C5 C A 17 94.023 -27.808 46.661 1.00 22.54 C
ATOM 21 C6 C A 17 93.161 -27.191 47.474 1.00 24.02 C
ATOM 22 P A A 18 87.408 -25.410 46.972 1.00 71.46 P
ATOM 23 OP1 A A 18 86.292 -26.391 47.123 1.00 51.65 O
ATOM 24 OP2 A A 18 88.316 -25.505 45.782 1.00 51.06 O
ATOM 25 O5' A A 18 86.819 -23.928 47.100 1.00 64.79 O
TER
ATOM 1 O3' C B 17 88.322 -25.529 48.293 1.00 65.59 O
ATOM 2 P A B 18 87.408 -25.410 46.972 1.00 71.46 P
ATOM 3 OP1 A B 18 86.292 -26.391 47.123 1.00 51.65 O
ATOM 4 OP2 A B 18 88.316 -25.505 45.782 1.00 51.06 O
ATOM 5 O5' A B 18 86.819 -23.928 47.100 1.00 64.79 O
ATOM 6 C5' A B 18 86.300 -23.468 48.350 1.00 57.09 C
ATOM 7 C4' A B 18 85.941 -22.002 48.276 1.00 51.90 C
ATOM 8 O4' A B 18 87.132 -21.180 48.338 1.00 48.21 O
ATOM 9 C3' A B 18 85.264 -21.567 46.997 1.00 51.02 C
ATOM 10 O3' A B 18 83.888 -21.888 47.014 1.00 52.48 O
ATOM 11 C2' A B 18 85.537 -20.069 46.983 1.00 47.95 C
ATOM 12 O2' A B 18 84.686 -19.337 47.835 1.00 46.02 O
ATOM 13 C1' A B 18 86.966 -20.028 47.523 1.00 44.28 C
ATOM 14 N9 A B 18 87.974 -20.086 46.466 1.00 20.52 N
ATOM 15 C8 A B 18 88.700 -21.190 46.102 1.00 18.70 C
ATOM 16 N7 A B 18 89.542 -20.968 45.126 1.00 17.24 N
ATOM 17 C5 A B 18 89.361 -19.629 44.828 1.00 13.00 C
ATOM 18 C6 A B 18 89.972 -18.791 43.898 1.00 12.00 C
ATOM 19 N6 A B 18 90.942 -19.190 43.071 1.00 8.24 N
ATOM 20 N1 A B 18 89.561 -17.503 43.848 1.00 13.14 N
ATOM 21 C2 A B 18 88.609 -17.105 44.695 1.00 10.87 C
ATOM 22 N3 A B 18 87.969 -17.801 45.625 1.00 14.50 N
ATOM 23 C4 A B 18 88.395 -19.073 45.640 1.00 14.88 C
ATOM 24 P G B 19 83.230 -22.574 45.724 1.00 43.57 P
ATOM 25 OP1 G B 19 81.760 -22.539 45.945 1.00 38.61 O
ATOM 26 OP2 G B 19 83.902 -23.872 45.449 1.00 34.48 O
ATOM 27 O5' G B 19 83.602 -21.571 44.549 1.00 38.53 O
TER
ATOM 2 P C A 17 90.721 -29.709 50.858 1.00 57.46 P
ATOM 3 OP1 C A 17 89.434 -30.179 51.424 1.00 37.88 O
ATOM 4 OP2 C A 17 91.639 -30.683 50.203 1.00 37.16 O
ATOM 5 O5' C A 17 90.447 -28.482 49.880 1.00 57.10 O
ATOM 6 C5' C A 17 89.884 -27.291 50.408 1.00 57.84 C
ATOM 7 C4' C A 17 90.255 -26.081 49.578 1.00 58.32 C
ATOM 8 O4' C A 17 91.680 -26.024 49.330 1.00 55.76 O
ATOM 9 C3' C A 17 89.672 -25.966 48.187 1.00 59.94 C
ATOM 10 O3' C A 17 88.322 -25.529 48.293 1.00 65.59 O
ATOM 11 C2' C A 17 90.556 -24.877 47.579 1.00 57.14 C
ATOM 12 O2' C A 17 90.165 -23.577 47.981 1.00 56.82 O
ATOM 13 C1' C A 17 91.916 -25.195 48.204 1.00 52.26 C
ATOM 14 N1 C A 17 92.848 -25.876 47.298 1.00 26.29 N
ATOM 15 C2 C A 17 93.421 -25.149 46.255 1.00 23.99 C
ATOM 16 O2 C A 17 93.112 -23.957 46.115 1.00 24.12 O
ATOM 17 N3 C A 17 94.294 -25.759 45.426 1.00 22.10 N
ATOM 18 C4 C A 17 94.601 -27.041 45.612 1.00 21.46 C
ATOM 19 N4 C A 17 95.483 -27.601 44.784 1.00 20.67 N
ATOM 20 C5 C A 17 94.023 -27.808 46.661 1.00 22.54 C
ATOM 21 C6 C A 17 93.161 -27.191 47.474 1.00 24.02 C
ATOM 22 P A A 18 87.408 -25.410 46.972 1.00 71.46 P
ATOM 23 OP1 A A 18 86.292 -26.391 47.123 1.00 51.65 O
ATOM 24 OP2 A A 18 88.316 -25.505 45.782 1.00 51.06 O
ATOM 25 O5' A A 18 86.819 -23.928 47.100 1.00 64.79 O
TER
ATOM 1 O3' C B 17 88.322 -25.529 48.293 1.00 65.59 O
ATOM 2 P A B 18 87.408 -25.410 46.972 1.00 71.46 P
ATOM 3 OP1 A B 18 86.292 -26.391 47.123 1.00 51.65 O
ATOM 4 OP2 A B 18 88.316 -25.505 45.782 1.00 51.06 O
ATOM 5 O5' A B 18 86.819 -23.928 47.100 1.00 64.79 O
ATOM 6 C5' A B 18 86.300 -23.468 48.350 1.00 57.09 C
ATOM 7 C4' A B 18 85.941 -22.002 48.276 1.00 51.90 C
ATOM 8 O4' A B 18 87.132 -21.180 48.338 1.00 48.21 O
ATOM 9 C3' A B 18 85.264 -21.567 46.997 1.00 51.02 C
ATOM 10 O3' A B 18 83.888 -21.888 47.014 1.00 52.48 O
ATOM 11 C2' A B 18 85.537 -20.069 46.983 1.00 47.95 C
ATOM 12 O2' A B 18 84.686 -19.337 47.835 1.00 46.02 O
ATOM 13 C1' A B 18 86.966 -20.028 47.523 1.00 44.28 C
ATOM 14 N9 A B 18 87.974 -20.086 46.466 1.00 20.52 N
ATOM 15 C8 A B 18 88.700 -21.190 46.102 1.00 18.70 C
ATOM 16 N7 A B 18 89.542 -20.968 45.126 1.00 17.24 N
ATOM 17 C5 A B 18 89.361 -19.629 44.828 1.00 13.00 C
ATOM 18 C6 A B 18 89.972 -18.791 43.898 1.00 12.00 C
ATOM 19 N6 A B 18 90.942 -19.190 43.071 1.00 8.24 N
ATOM 20 N1 A B 18 89.561 -17.503 43.848 1.00 13.14 N
ATOM 21 C2 A B 18 88.609 -17.105 44.695 1.00 10.87 C
ATOM 22 N3 A B 18 87.969 -17.801 45.625 1.00 14.50 N
ATOM 23 C4 A B 18 88.395 -19.073 45.640 1.00 14.88 C
ATOM 24 P G B 19 83.230 -22.574 45.724 1.00 43.57 P
ATOM 25 OP1 G B 19 81.760 -22.539 45.945 1.00 38.61 O
ATOM 26 OP2 G B 19 83.902 -23.872 45.449 1.00 34.48 O
ATOM 27 O5' G B 19 83.602 -21.571 44.549 1.00 38.53 O
TER
Atoms:
C2: (93.421,-25.149,46.255)
OP1: (89.434,-30.179,51.424)
OP2: (91.639,-30.683,50.203)
C4: (94.601,-27.041,45.612)
O5': (90.447,-28.482,49.880)
C3': (89.672,-25.966,48.187)
C1': (91.916,-25.195,48.204)
O4': (91.680,-26.024,49.330)
C5': (89.884,-27.291,50.408)
P: (90.721,-29.709,50.858)
O2: (93.112,-23.957,46.115)
C4': (90.255,-26.081,49.578)
C2': (90.556,-24.877,47.579)
O2': (90.165,-23.577,47.981)
N1: (92.848,-25.876,47.298)
N3: (94.294,-25.759,45.426)
N4: (95.483,-27.601,44.784)
C6: (93.161,-27.191,47.474)
C5: (94.023,-27.808,46.661)
O3': (88.322,-25.529,48.293)
OP1: (89.434,-30.179,51.424)
OP2: (91.639,-30.683,50.203)
C4: (94.601,-27.041,45.612)
O5': (90.447,-28.482,49.880)
C3': (89.672,-25.966,48.187)
C1': (91.916,-25.195,48.204)
O4': (91.680,-26.024,49.330)
C5': (89.884,-27.291,50.408)
P: (90.721,-29.709,50.858)
O2: (93.112,-23.957,46.115)
C4': (90.255,-26.081,49.578)
C2': (90.556,-24.877,47.579)
O2': (90.165,-23.577,47.981)
N1: (92.848,-25.876,47.298)
N3: (94.294,-25.759,45.426)
N4: (95.483,-27.601,44.784)
C6: (93.161,-27.191,47.474)
C5: (94.023,-27.808,46.661)
O3': (88.322,-25.529,48.293)
OP1: (86.292,-26.391,47.123)
OP2: (88.316,-25.505,45.782)
C3': (85.264,-21.567,46.997)
C1': (86.966,-20.028,47.523)
C5': (86.300,-23.468,48.350)
O4': (87.132,-21.180,48.338)
C8: (88.700,-21.190,46.102)
O2': (84.686,-19.337,47.835)
C6: (89.972,-18.791,43.898)
C5: (89.361,-19.629,44.828)
C4: (88.395,-19.073,45.640)
P: (87.408,-25.410,46.972)
C4': (85.941,-22.002,48.276)
C2': (85.537,-20.069,46.983)
C2: (88.609,-17.105,44.695)
N1: (89.561,-17.503,43.848)
N3: (87.969,-17.801,45.625)
N6: (90.942,-19.190,43.071)
N7: (89.542,-20.968,45.126)
N9: (87.974,-20.086,46.466)
O5': (86.819,-23.928,47.100)
O3': (83.888,-21.888,47.014)
OP2: (88.316,-25.505,45.782)
C3': (85.264,-21.567,46.997)
C1': (86.966,-20.028,47.523)
C5': (86.300,-23.468,48.350)
O4': (87.132,-21.180,48.338)
C8: (88.700,-21.190,46.102)
O2': (84.686,-19.337,47.835)
C6: (89.972,-18.791,43.898)
C5: (89.361,-19.629,44.828)
C4: (88.395,-19.073,45.640)
P: (87.408,-25.410,46.972)
C4': (85.941,-22.002,48.276)
C2': (85.537,-20.069,46.983)
C2: (88.609,-17.105,44.695)
N1: (89.561,-17.503,43.848)
N3: (87.969,-17.801,45.625)
N6: (90.942,-19.190,43.071)
N7: (89.542,-20.968,45.126)
N9: (87.974,-20.086,46.466)
O5': (86.819,-23.928,47.100)
O3': (83.888,-21.888,47.014)
Image (generated by PyMOL):