Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12038:12039
Extra
PDB:
ATOM 1 O3' C A2037 1.457 -51.176 110.772 1.00 64.85 O
ATOM 2 P C A2038 0.889 -49.805 110.122 1.00 80.11 P
ATOM 3 OP1 C A2038 -0.247 -49.366 110.973 1.00 80.38 O
ATOM 4 OP2 C A2038 0.651 -50.048 108.672 1.00 79.86 O
ATOM 5 O5' C A2038 2.101 -48.808 110.295 1.00 79.76 O
ATOM 6 C5' C A2038 2.420 -48.261 111.554 1.00 79.90 C
ATOM 7 C4' C A2038 3.626 -47.393 111.439 1.00 79.53 C
ATOM 8 O4' C A2038 4.667 -48.124 110.769 1.00 79.38 O
ATOM 9 C3' C A2038 3.458 -46.170 110.580 1.00 79.08 C
ATOM 10 O3' C A2038 2.814 -45.130 111.258 1.00 79.12 O
ATOM 11 C2' C A2038 4.888 -45.845 110.171 1.00 78.73 C
ATOM 12 O2' C A2038 5.568 -45.140 111.205 1.00 78.76 O
ATOM 13 C1' C A2038 5.495 -47.237 110.064 1.00 78.92 C
ATOM 14 N1 C A2038 5.587 -47.695 108.700 1.00 78.68 N
ATOM 15 C2 C A2038 6.753 -47.392 108.018 1.00 78.32 C
ATOM 16 O2 C A2038 7.635 -46.716 108.600 1.00 78.21 O
ATOM 17 N3 C A2038 6.874 -47.821 106.744 1.00 78.11 N
ATOM 18 C4 C A2038 5.891 -48.531 106.196 1.00 78.27 C
ATOM 19 N4 C A2038 6.048 -48.944 104.937 1.00 78.07 N
ATOM 20 C5 C A2038 4.704 -48.860 106.907 1.00 78.64 C
ATOM 21 C6 C A2038 4.589 -48.425 108.161 1.00 78.84 C
ATOM 22 P A A2039 2.473 -43.782 110.480 1.00 65.56 P
ATOM 23 OP1 A A2039 1.068 -43.400 110.859 1.00 65.77 O
ATOM 24 OP2 A A2039 2.799 -44.010 109.030 1.00 65.21 O
ATOM 25 O5' A A2039 3.514 -42.741 111.098 1.00 65.37 O
TER
ATOM 1 O3' C B2038 2.814 -45.130 111.258 1.00 79.12 O
ATOM 2 P A B2039 2.473 -43.782 110.480 1.00 65.56 P
ATOM 3 OP1 A B2039 1.068 -43.400 110.859 1.00 65.77 O
ATOM 4 OP2 A B2039 2.799 -44.010 109.030 1.00 65.21 O
ATOM 5 O5' A B2039 3.514 -42.741 111.098 1.00 65.37 O
ATOM 6 C5' A B2039 3.237 -42.041 112.290 1.00 65.58 C
ATOM 7 C4' A B2039 4.053 -40.790 112.358 1.00 65.27 C
ATOM 8 O4' A B2039 5.440 -41.101 112.108 1.00 65.09 O
ATOM 9 C3' A B2039 3.730 -39.732 111.328 1.00 64.88 C
ATOM 10 O3' A B2039 2.612 -38.949 111.700 1.00 64.99 O
ATOM 11 C2' A B2039 5.013 -38.934 111.281 1.00 64.57 C
ATOM 12 O2' A B2039 5.065 -38.056 112.384 1.00 64.70 O
ATOM 13 C1' A B2039 6.064 -40.015 111.488 1.00 64.67 C
ATOM 14 N9 A B2039 6.650 -40.472 110.225 1.00 64.36 N
ATOM 15 C8 A B2039 6.346 -41.599 109.528 1.00 64.42 C
ATOM 16 N7 A B2039 7.045 -41.754 108.439 1.00 64.11 N
ATOM 17 C5 A B2039 7.869 -40.648 108.441 1.00 63.82 C
ATOM 18 C6 A B2039 8.856 -40.234 107.528 1.00 63.42 C
ATOM 19 N6 A B2039 9.127 -40.953 106.431 1.00 63.27 N
ATOM 20 N1 A B2039 9.531 -39.085 107.788 1.00 63.21 N
ATOM 21 C2 A B2039 9.187 -38.435 108.913 1.00 63.41 C
ATOM 22 N3 A B2039 8.273 -38.725 109.842 1.00 63.79 N
ATOM 23 C4 A B2039 7.649 -39.862 109.539 1.00 63.97 C
ATOM 24 P A B2040 1.476 -38.608 110.627 1.00 52.09 P
ATOM 25 OP1 A B2040 0.213 -38.244 111.388 1.00 52.40 O
ATOM 26 OP2 A B2040 1.457 -39.750 109.692 1.00 52.05 O
ATOM 27 O5' A B2040 2.061 -37.301 109.897 1.00 51.63 O
TER
ATOM 2 P C A2038 0.889 -49.805 110.122 1.00 80.11 P
ATOM 3 OP1 C A2038 -0.247 -49.366 110.973 1.00 80.38 O
ATOM 4 OP2 C A2038 0.651 -50.048 108.672 1.00 79.86 O
ATOM 5 O5' C A2038 2.101 -48.808 110.295 1.00 79.76 O
ATOM 6 C5' C A2038 2.420 -48.261 111.554 1.00 79.90 C
ATOM 7 C4' C A2038 3.626 -47.393 111.439 1.00 79.53 C
ATOM 8 O4' C A2038 4.667 -48.124 110.769 1.00 79.38 O
ATOM 9 C3' C A2038 3.458 -46.170 110.580 1.00 79.08 C
ATOM 10 O3' C A2038 2.814 -45.130 111.258 1.00 79.12 O
ATOM 11 C2' C A2038 4.888 -45.845 110.171 1.00 78.73 C
ATOM 12 O2' C A2038 5.568 -45.140 111.205 1.00 78.76 O
ATOM 13 C1' C A2038 5.495 -47.237 110.064 1.00 78.92 C
ATOM 14 N1 C A2038 5.587 -47.695 108.700 1.00 78.68 N
ATOM 15 C2 C A2038 6.753 -47.392 108.018 1.00 78.32 C
ATOM 16 O2 C A2038 7.635 -46.716 108.600 1.00 78.21 O
ATOM 17 N3 C A2038 6.874 -47.821 106.744 1.00 78.11 N
ATOM 18 C4 C A2038 5.891 -48.531 106.196 1.00 78.27 C
ATOM 19 N4 C A2038 6.048 -48.944 104.937 1.00 78.07 N
ATOM 20 C5 C A2038 4.704 -48.860 106.907 1.00 78.64 C
ATOM 21 C6 C A2038 4.589 -48.425 108.161 1.00 78.84 C
ATOM 22 P A A2039 2.473 -43.782 110.480 1.00 65.56 P
ATOM 23 OP1 A A2039 1.068 -43.400 110.859 1.00 65.77 O
ATOM 24 OP2 A A2039 2.799 -44.010 109.030 1.00 65.21 O
ATOM 25 O5' A A2039 3.514 -42.741 111.098 1.00 65.37 O
TER
ATOM 1 O3' C B2038 2.814 -45.130 111.258 1.00 79.12 O
ATOM 2 P A B2039 2.473 -43.782 110.480 1.00 65.56 P
ATOM 3 OP1 A B2039 1.068 -43.400 110.859 1.00 65.77 O
ATOM 4 OP2 A B2039 2.799 -44.010 109.030 1.00 65.21 O
ATOM 5 O5' A B2039 3.514 -42.741 111.098 1.00 65.37 O
ATOM 6 C5' A B2039 3.237 -42.041 112.290 1.00 65.58 C
ATOM 7 C4' A B2039 4.053 -40.790 112.358 1.00 65.27 C
ATOM 8 O4' A B2039 5.440 -41.101 112.108 1.00 65.09 O
ATOM 9 C3' A B2039 3.730 -39.732 111.328 1.00 64.88 C
ATOM 10 O3' A B2039 2.612 -38.949 111.700 1.00 64.99 O
ATOM 11 C2' A B2039 5.013 -38.934 111.281 1.00 64.57 C
ATOM 12 O2' A B2039 5.065 -38.056 112.384 1.00 64.70 O
ATOM 13 C1' A B2039 6.064 -40.015 111.488 1.00 64.67 C
ATOM 14 N9 A B2039 6.650 -40.472 110.225 1.00 64.36 N
ATOM 15 C8 A B2039 6.346 -41.599 109.528 1.00 64.42 C
ATOM 16 N7 A B2039 7.045 -41.754 108.439 1.00 64.11 N
ATOM 17 C5 A B2039 7.869 -40.648 108.441 1.00 63.82 C
ATOM 18 C6 A B2039 8.856 -40.234 107.528 1.00 63.42 C
ATOM 19 N6 A B2039 9.127 -40.953 106.431 1.00 63.27 N
ATOM 20 N1 A B2039 9.531 -39.085 107.788 1.00 63.21 N
ATOM 21 C2 A B2039 9.187 -38.435 108.913 1.00 63.41 C
ATOM 22 N3 A B2039 8.273 -38.725 109.842 1.00 63.79 N
ATOM 23 C4 A B2039 7.649 -39.862 109.539 1.00 63.97 C
ATOM 24 P A B2040 1.476 -38.608 110.627 1.00 52.09 P
ATOM 25 OP1 A B2040 0.213 -38.244 111.388 1.00 52.40 O
ATOM 26 OP2 A B2040 1.457 -39.750 109.692 1.00 52.05 O
ATOM 27 O5' A B2040 2.061 -37.301 109.897 1.00 51.63 O
TER
Atoms:
C2: (6.753,-47.392,108.018)
OP1: (-0.247,-49.366,110.973)
OP2: (0.651,-50.048,108.672)
C4: (5.891,-48.531,106.196)
O5': (2.101,-48.808,110.295)
C3': (3.458,-46.170,110.580)
C1': (5.495,-47.237,110.064)
O4': (4.667,-48.124,110.769)
C5': (2.420,-48.261,111.554)
P: (0.889,-49.805,110.122)
O2: (7.635,-46.716,108.600)
C4': (3.626,-47.393,111.439)
C2': (4.888,-45.845,110.171)
O2': (5.568,-45.140,111.205)
N1: (5.587,-47.695,108.700)
N3: (6.874,-47.821,106.744)
N4: (6.048,-48.944,104.937)
C6: (4.589,-48.425,108.161)
C5: (4.704,-48.860,106.907)
O3': (2.814,-45.130,111.258)
OP1: (-0.247,-49.366,110.973)
OP2: (0.651,-50.048,108.672)
C4: (5.891,-48.531,106.196)
O5': (2.101,-48.808,110.295)
C3': (3.458,-46.170,110.580)
C1': (5.495,-47.237,110.064)
O4': (4.667,-48.124,110.769)
C5': (2.420,-48.261,111.554)
P: (0.889,-49.805,110.122)
O2: (7.635,-46.716,108.600)
C4': (3.626,-47.393,111.439)
C2': (4.888,-45.845,110.171)
O2': (5.568,-45.140,111.205)
N1: (5.587,-47.695,108.700)
N3: (6.874,-47.821,106.744)
N4: (6.048,-48.944,104.937)
C6: (4.589,-48.425,108.161)
C5: (4.704,-48.860,106.907)
O3': (2.814,-45.130,111.258)
OP1: (1.068,-43.400,110.859)
OP2: (2.799,-44.010,109.030)
C3': (3.730,-39.732,111.328)
C1': (6.064,-40.015,111.488)
C5': (3.237,-42.041,112.290)
O4': (5.440,-41.101,112.108)
C8: (6.346,-41.599,109.528)
O2': (5.065,-38.056,112.384)
C6: (8.856,-40.234,107.528)
C5: (7.869,-40.648,108.441)
C4: (7.649,-39.862,109.539)
P: (2.473,-43.782,110.480)
C4': (4.053,-40.790,112.358)
C2': (5.013,-38.934,111.281)
C2: (9.187,-38.435,108.913)
N1: (9.531,-39.085,107.788)
N3: (8.273,-38.725,109.842)
N6: (9.127,-40.953,106.431)
N7: (7.045,-41.754,108.439)
N9: (6.650,-40.472,110.225)
O5': (3.514,-42.741,111.098)
O3': (2.612,-38.949,111.700)
OP2: (2.799,-44.010,109.030)
C3': (3.730,-39.732,111.328)
C1': (6.064,-40.015,111.488)
C5': (3.237,-42.041,112.290)
O4': (5.440,-41.101,112.108)
C8: (6.346,-41.599,109.528)
O2': (5.065,-38.056,112.384)
C6: (8.856,-40.234,107.528)
C5: (7.869,-40.648,108.441)
C4: (7.649,-39.862,109.539)
P: (2.473,-43.782,110.480)
C4': (4.053,-40.790,112.358)
C2': (5.013,-38.934,111.281)
C2: (9.187,-38.435,108.913)
N1: (9.531,-39.085,107.788)
N3: (8.273,-38.725,109.842)
N6: (9.127,-40.953,106.431)
N7: (7.045,-41.754,108.439)
N9: (6.650,-40.472,110.225)
O5': (3.514,-42.741,111.098)
O3': (2.612,-38.949,111.700)
Image (generated by PyMOL):