Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12019:12020
Extra
PDB:
ATOM 1 O3' U A2018 5.980 -46.555 98.215 1.00 72.83 O
ATOM 2 P C A2019 6.847 -47.512 99.180 1.00 93.21 P
ATOM 3 OP1 C A2019 8.011 -47.966 98.395 1.00 93.04 O
ATOM 4 OP2 C A2019 5.917 -48.525 99.757 1.00 93.66 O
ATOM 5 O5' C A2019 7.331 -46.528 100.324 1.00 93.15 O
ATOM 6 C5' C A2019 8.246 -45.499 100.036 1.00 92.77 C
ATOM 7 C4' C A2019 8.137 -44.387 101.032 1.00 92.74 C
ATOM 8 O4' C A2019 6.745 -44.039 101.213 1.00 92.87 O
ATOM 9 C3' C A2019 8.618 -44.700 102.438 1.00 93.01 C
ATOM 10 O3' C A2019 10.018 -44.605 102.571 1.00 92.86 O
ATOM 11 C2' C A2019 7.873 -43.669 103.261 1.00 93.06 C
ATOM 12 O2' C A2019 8.468 -42.384 103.095 1.00 92.71 O
ATOM 13 C1' C A2019 6.518 -43.670 102.554 1.00 93.09 C
ATOM 14 N1 C A2019 5.585 -44.646 103.147 1.00 93.51 N
ATOM 15 C2 C A2019 4.825 -44.245 104.259 1.00 93.76 C
ATOM 16 O2 C A2019 4.960 -43.077 104.705 1.00 93.61 O
ATOM 17 N3 C A2019 3.955 -45.143 104.802 1.00 94.16 N
ATOM 18 C4 C A2019 3.832 -46.364 104.265 1.00 94.32 C
ATOM 19 N4 C A2019 2.955 -47.208 104.825 1.00 94.73 N
ATOM 20 C5 C A2019 4.599 -46.777 103.127 1.00 94.08 C
ATOM 21 C6 C A2019 5.455 -45.900 102.603 1.00 93.68 C
ATOM 22 P A A2020 10.896 -45.909 102.906 1.00 63.37 P
ATOM 23 OP1 A A2020 11.669 -46.217 101.651 1.00 63.11 O
ATOM 24 OP2 A A2020 9.991 -46.949 103.489 1.00 63.81 O
ATOM 25 O5' A A2020 11.883 -45.370 104.024 1.00 63.39 O
TER
ATOM 1 O3' C B2019 10.018 -44.605 102.571 1.00 92.86 O
ATOM 2 P A B2020 10.896 -45.909 102.906 1.00 63.37 P
ATOM 3 OP1 A B2020 11.669 -46.217 101.651 1.00 63.11 O
ATOM 4 OP2 A B2020 9.991 -46.949 103.489 1.00 63.81 O
ATOM 5 O5' A B2020 11.883 -45.370 104.024 1.00 63.39 O
ATOM 6 C5' A B2020 13.146 -44.857 103.644 1.00 63.08 C
ATOM 7 C4' A B2020 13.686 -43.909 104.651 1.00 63.06 C
ATOM 8 O4' A B2020 12.640 -43.096 105.208 1.00 63.12 O
ATOM 9 C3' A B2020 14.306 -44.517 105.876 1.00 63.39 C
ATOM 10 O3' A B2020 15.543 -45.109 105.601 1.00 63.35 O
ATOM 11 C2' A B2020 14.425 -43.304 106.759 1.00 63.34 C
ATOM 12 O2' A B2020 15.486 -42.494 106.288 1.00 62.99 O
ATOM 13 C1' A B2020 13.115 -42.581 106.438 1.00 63.25 C
ATOM 14 N9 A B2020 12.095 -42.741 107.494 1.00 63.62 N
ATOM 15 C8 A B2020 10.999 -43.507 107.600 1.00 63.89 C
ATOM 16 N7 A B2020 10.353 -43.299 108.717 1.00 64.18 N
ATOM 17 C5 A B2020 11.051 -42.342 109.373 1.00 64.09 C
ATOM 18 C6 A B2020 10.883 -41.706 110.590 1.00 64.29 C
ATOM 19 N6 A B2020 9.904 -41.894 111.464 1.00 64.64 N
ATOM 20 N1 A B2020 11.806 -40.803 110.918 1.00 64.12 N
ATOM 21 C2 A B2020 12.802 -40.556 110.075 1.00 63.77 C
ATOM 22 N3 A B2020 13.054 -41.092 108.909 1.00 63.56 N
ATOM 23 C4 A B2020 12.122 -41.992 108.625 1.00 63.74 C
ATOM 24 P A B2021 15.853 -46.575 106.125 1.00 51.92 P
ATOM 25 OP1 A B2021 16.880 -47.140 105.245 1.00 51.77 O
ATOM 26 OP2 A B2021 14.591 -47.267 106.227 1.00 52.19 O
ATOM 27 O5' A B2021 16.452 -46.301 107.575 1.00 52.15 O
TER
ATOM 2 P C A2019 6.847 -47.512 99.180 1.00 93.21 P
ATOM 3 OP1 C A2019 8.011 -47.966 98.395 1.00 93.04 O
ATOM 4 OP2 C A2019 5.917 -48.525 99.757 1.00 93.66 O
ATOM 5 O5' C A2019 7.331 -46.528 100.324 1.00 93.15 O
ATOM 6 C5' C A2019 8.246 -45.499 100.036 1.00 92.77 C
ATOM 7 C4' C A2019 8.137 -44.387 101.032 1.00 92.74 C
ATOM 8 O4' C A2019 6.745 -44.039 101.213 1.00 92.87 O
ATOM 9 C3' C A2019 8.618 -44.700 102.438 1.00 93.01 C
ATOM 10 O3' C A2019 10.018 -44.605 102.571 1.00 92.86 O
ATOM 11 C2' C A2019 7.873 -43.669 103.261 1.00 93.06 C
ATOM 12 O2' C A2019 8.468 -42.384 103.095 1.00 92.71 O
ATOM 13 C1' C A2019 6.518 -43.670 102.554 1.00 93.09 C
ATOM 14 N1 C A2019 5.585 -44.646 103.147 1.00 93.51 N
ATOM 15 C2 C A2019 4.825 -44.245 104.259 1.00 93.76 C
ATOM 16 O2 C A2019 4.960 -43.077 104.705 1.00 93.61 O
ATOM 17 N3 C A2019 3.955 -45.143 104.802 1.00 94.16 N
ATOM 18 C4 C A2019 3.832 -46.364 104.265 1.00 94.32 C
ATOM 19 N4 C A2019 2.955 -47.208 104.825 1.00 94.73 N
ATOM 20 C5 C A2019 4.599 -46.777 103.127 1.00 94.08 C
ATOM 21 C6 C A2019 5.455 -45.900 102.603 1.00 93.68 C
ATOM 22 P A A2020 10.896 -45.909 102.906 1.00 63.37 P
ATOM 23 OP1 A A2020 11.669 -46.217 101.651 1.00 63.11 O
ATOM 24 OP2 A A2020 9.991 -46.949 103.489 1.00 63.81 O
ATOM 25 O5' A A2020 11.883 -45.370 104.024 1.00 63.39 O
TER
ATOM 1 O3' C B2019 10.018 -44.605 102.571 1.00 92.86 O
ATOM 2 P A B2020 10.896 -45.909 102.906 1.00 63.37 P
ATOM 3 OP1 A B2020 11.669 -46.217 101.651 1.00 63.11 O
ATOM 4 OP2 A B2020 9.991 -46.949 103.489 1.00 63.81 O
ATOM 5 O5' A B2020 11.883 -45.370 104.024 1.00 63.39 O
ATOM 6 C5' A B2020 13.146 -44.857 103.644 1.00 63.08 C
ATOM 7 C4' A B2020 13.686 -43.909 104.651 1.00 63.06 C
ATOM 8 O4' A B2020 12.640 -43.096 105.208 1.00 63.12 O
ATOM 9 C3' A B2020 14.306 -44.517 105.876 1.00 63.39 C
ATOM 10 O3' A B2020 15.543 -45.109 105.601 1.00 63.35 O
ATOM 11 C2' A B2020 14.425 -43.304 106.759 1.00 63.34 C
ATOM 12 O2' A B2020 15.486 -42.494 106.288 1.00 62.99 O
ATOM 13 C1' A B2020 13.115 -42.581 106.438 1.00 63.25 C
ATOM 14 N9 A B2020 12.095 -42.741 107.494 1.00 63.62 N
ATOM 15 C8 A B2020 10.999 -43.507 107.600 1.00 63.89 C
ATOM 16 N7 A B2020 10.353 -43.299 108.717 1.00 64.18 N
ATOM 17 C5 A B2020 11.051 -42.342 109.373 1.00 64.09 C
ATOM 18 C6 A B2020 10.883 -41.706 110.590 1.00 64.29 C
ATOM 19 N6 A B2020 9.904 -41.894 111.464 1.00 64.64 N
ATOM 20 N1 A B2020 11.806 -40.803 110.918 1.00 64.12 N
ATOM 21 C2 A B2020 12.802 -40.556 110.075 1.00 63.77 C
ATOM 22 N3 A B2020 13.054 -41.092 108.909 1.00 63.56 N
ATOM 23 C4 A B2020 12.122 -41.992 108.625 1.00 63.74 C
ATOM 24 P A B2021 15.853 -46.575 106.125 1.00 51.92 P
ATOM 25 OP1 A B2021 16.880 -47.140 105.245 1.00 51.77 O
ATOM 26 OP2 A B2021 14.591 -47.267 106.227 1.00 52.19 O
ATOM 27 O5' A B2021 16.452 -46.301 107.575 1.00 52.15 O
TER
Atoms:
C2: (4.825,-44.245,104.259)
OP1: (8.011,-47.966,98.395)
OP2: (5.917,-48.525,99.757)
C4: (3.832,-46.364,104.265)
O5': (7.331,-46.528,100.324)
C3': (8.618,-44.700,102.438)
C1': (6.518,-43.670,102.554)
O4': (6.745,-44.039,101.213)
C5': (8.246,-45.499,100.036)
P: (6.847,-47.512,99.180)
O2: (4.960,-43.077,104.705)
C4': (8.137,-44.387,101.032)
C2': (7.873,-43.669,103.261)
O2': (8.468,-42.384,103.095)
N1: (5.585,-44.646,103.147)
N3: (3.955,-45.143,104.802)
N4: (2.955,-47.208,104.825)
C6: (5.455,-45.900,102.603)
C5: (4.599,-46.777,103.127)
O3': (10.018,-44.605,102.571)
OP1: (8.011,-47.966,98.395)
OP2: (5.917,-48.525,99.757)
C4: (3.832,-46.364,104.265)
O5': (7.331,-46.528,100.324)
C3': (8.618,-44.700,102.438)
C1': (6.518,-43.670,102.554)
O4': (6.745,-44.039,101.213)
C5': (8.246,-45.499,100.036)
P: (6.847,-47.512,99.180)
O2: (4.960,-43.077,104.705)
C4': (8.137,-44.387,101.032)
C2': (7.873,-43.669,103.261)
O2': (8.468,-42.384,103.095)
N1: (5.585,-44.646,103.147)
N3: (3.955,-45.143,104.802)
N4: (2.955,-47.208,104.825)
C6: (5.455,-45.900,102.603)
C5: (4.599,-46.777,103.127)
O3': (10.018,-44.605,102.571)
OP1: (11.669,-46.217,101.651)
OP2: (9.991,-46.949,103.489)
C3': (14.306,-44.517,105.876)
C1': (13.115,-42.581,106.438)
C5': (13.146,-44.857,103.644)
O4': (12.640,-43.096,105.208)
C8: (10.999,-43.507,107.600)
O2': (15.486,-42.494,106.288)
C6: (10.883,-41.706,110.590)
C5: (11.051,-42.342,109.373)
C4: (12.122,-41.992,108.625)
P: (10.896,-45.909,102.906)
C4': (13.686,-43.909,104.651)
C2': (14.425,-43.304,106.759)
C2: (12.802,-40.556,110.075)
N1: (11.806,-40.803,110.918)
N3: (13.054,-41.092,108.909)
N6: (9.904,-41.894,111.464)
N7: (10.353,-43.299,108.717)
N9: (12.095,-42.741,107.494)
O5': (11.883,-45.370,104.024)
O3': (15.543,-45.109,105.601)
OP2: (9.991,-46.949,103.489)
C3': (14.306,-44.517,105.876)
C1': (13.115,-42.581,106.438)
C5': (13.146,-44.857,103.644)
O4': (12.640,-43.096,105.208)
C8: (10.999,-43.507,107.600)
O2': (15.486,-42.494,106.288)
C6: (10.883,-41.706,110.590)
C5: (11.051,-42.342,109.373)
C4: (12.122,-41.992,108.625)
P: (10.896,-45.909,102.906)
C4': (13.686,-43.909,104.651)
C2': (14.425,-43.304,106.759)
C2: (12.802,-40.556,110.075)
N1: (11.806,-40.803,110.918)
N3: (13.054,-41.092,108.909)
N6: (9.904,-41.894,111.464)
N7: (10.353,-43.299,108.717)
N9: (12.095,-42.741,107.494)
O5': (11.883,-45.370,104.024)
O3': (15.543,-45.109,105.601)
Image (generated by PyMOL):