Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:0262:0231
Extra
PDB:
ATOM 1 O3' G A 261 78.033 97.972 0.835 1.00 64.60 O
ATOM 2 P G A 262 78.418 98.138 -0.723 1.00 64.21 P
ATOM 3 OP1 G A 262 77.211 98.697 -1.388 1.00 63.25 O
ATOM 4 OP2 G A 262 79.019 96.873 -1.232 1.00 62.47 O
ATOM 5 O5' G A 262 79.559 99.252 -0.728 1.00 60.82 O
ATOM 6 C5' G A 262 79.262 100.609 -0.359 1.00 56.43 C
ATOM 7 C4' G A 262 80.536 101.379 -0.126 1.00 55.84 C
ATOM 8 O4' G A 262 81.317 100.705 0.898 1.00 54.78 O
ATOM 9 C3' G A 262 81.497 101.445 -1.299 1.00 55.81 C
ATOM 10 O3' G A 262 81.140 102.424 -2.259 1.00 56.66 O
ATOM 11 C2' G A 262 82.813 101.756 -0.606 1.00 54.35 C
ATOM 12 O2' G A 262 82.900 103.105 -0.189 1.00 50.57 O
ATOM 13 C1' G A 262 82.703 100.842 0.612 1.00 53.43 C
ATOM 14 N9 G A 262 83.241 99.516 0.323 1.00 53.07 N
ATOM 15 C8 G A 262 82.532 98.362 0.081 1.00 53.15 C
ATOM 16 N7 G A 262 83.298 97.330 -0.149 1.00 53.62 N
ATOM 17 C5 G A 262 84.589 97.833 -0.056 1.00 52.63 C
ATOM 18 C6 G A 262 85.841 97.185 -0.213 1.00 53.45 C
ATOM 19 O6 G A 262 86.072 95.997 -0.470 1.00 55.48 O
ATOM 20 N1 G A 262 86.897 98.071 -0.043 1.00 53.59 N
ATOM 21 C2 G A 262 86.770 99.406 0.239 1.00 52.77 C
ATOM 22 N2 G A 262 87.913 100.094 0.355 1.00 52.11 N
ATOM 23 N3 G A 262 85.610 100.022 0.391 1.00 51.77 N
ATOM 24 C4 G A 262 84.570 99.180 0.232 1.00 52.44 C
ATOM 25 P G A 263 81.543 102.200 -3.798 1.00 56.15 P
ATOM 26 OP1 G A 263 80.904 103.294 -4.578 1.00 53.50 O
ATOM 27 OP2 G A 263 81.257 100.778 -4.148 1.00 55.46 O
ATOM 28 O5' G A 263 83.124 102.391 -3.810 1.00 53.91 O
TER
ATOM 1 O3' A B 230 92.831 107.705 3.560 1.00 48.05 O
ATOM 2 P A B 231 93.022 108.091 2.006 1.00 50.74 P
ATOM 3 OP1 A B 231 94.473 108.381 1.826 1.00 48.79 O
ATOM 4 OP2 A B 231 92.007 109.108 1.598 1.00 44.13 O
ATOM 5 O5' A B 231 92.663 106.744 1.237 1.00 49.88 O
ATOM 6 C5' A B 231 93.296 105.503 1.587 1.00 51.85 C
ATOM 7 C4' A B 231 92.573 104.355 0.927 1.00 54.52 C
ATOM 8 O4' A B 231 91.227 104.256 1.457 1.00 54.03 O
ATOM 9 C3' A B 231 92.375 104.497 -0.573 1.00 55.23 C
ATOM 10 O3' A B 231 93.552 104.071 -1.256 1.00 57.67 O
ATOM 11 C2' A B 231 91.180 103.582 -0.832 1.00 54.13 C
ATOM 12 O2' A B 231 91.543 102.217 -0.934 1.00 54.16 O
ATOM 13 C1' A B 231 90.354 103.784 0.447 1.00 52.22 C
ATOM 14 N9 A B 231 89.236 104.719 0.328 1.00 49.22 N
ATOM 15 C8 A B 231 89.275 106.085 0.212 1.00 49.86 C
ATOM 16 N7 A B 231 88.092 106.641 0.093 1.00 48.44 N
ATOM 17 C5 A B 231 87.215 105.569 0.141 1.00 47.63 C
ATOM 18 C6 A B 231 85.812 105.489 0.055 1.00 48.38 C
ATOM 19 N6 A B 231 85.014 106.548 -0.128 1.00 47.68 N
ATOM 20 N1 A B 231 85.248 104.264 0.155 1.00 48.23 N
ATOM 21 C2 A B 231 86.048 103.200 0.315 1.00 48.00 C
ATOM 22 N3 A B 231 87.377 103.148 0.395 1.00 47.63 N
ATOM 23 C4 A B 231 87.905 104.380 0.300 1.00 47.97 C
ATOM 24 P C B 232 94.366 105.108 -2.174 1.00 59.66 P
ATOM 25 OP1 C B 232 95.611 104.422 -2.619 1.00 57.23 O
ATOM 26 OP2 C B 232 94.460 106.412 -1.478 1.00 60.05 O
ATOM 27 O5' C B 232 93.407 105.314 -3.421 1.00 57.64 O
TER
ATOM 2 P G A 262 78.418 98.138 -0.723 1.00 64.21 P
ATOM 3 OP1 G A 262 77.211 98.697 -1.388 1.00 63.25 O
ATOM 4 OP2 G A 262 79.019 96.873 -1.232 1.00 62.47 O
ATOM 5 O5' G A 262 79.559 99.252 -0.728 1.00 60.82 O
ATOM 6 C5' G A 262 79.262 100.609 -0.359 1.00 56.43 C
ATOM 7 C4' G A 262 80.536 101.379 -0.126 1.00 55.84 C
ATOM 8 O4' G A 262 81.317 100.705 0.898 1.00 54.78 O
ATOM 9 C3' G A 262 81.497 101.445 -1.299 1.00 55.81 C
ATOM 10 O3' G A 262 81.140 102.424 -2.259 1.00 56.66 O
ATOM 11 C2' G A 262 82.813 101.756 -0.606 1.00 54.35 C
ATOM 12 O2' G A 262 82.900 103.105 -0.189 1.00 50.57 O
ATOM 13 C1' G A 262 82.703 100.842 0.612 1.00 53.43 C
ATOM 14 N9 G A 262 83.241 99.516 0.323 1.00 53.07 N
ATOM 15 C8 G A 262 82.532 98.362 0.081 1.00 53.15 C
ATOM 16 N7 G A 262 83.298 97.330 -0.149 1.00 53.62 N
ATOM 17 C5 G A 262 84.589 97.833 -0.056 1.00 52.63 C
ATOM 18 C6 G A 262 85.841 97.185 -0.213 1.00 53.45 C
ATOM 19 O6 G A 262 86.072 95.997 -0.470 1.00 55.48 O
ATOM 20 N1 G A 262 86.897 98.071 -0.043 1.00 53.59 N
ATOM 21 C2 G A 262 86.770 99.406 0.239 1.00 52.77 C
ATOM 22 N2 G A 262 87.913 100.094 0.355 1.00 52.11 N
ATOM 23 N3 G A 262 85.610 100.022 0.391 1.00 51.77 N
ATOM 24 C4 G A 262 84.570 99.180 0.232 1.00 52.44 C
ATOM 25 P G A 263 81.543 102.200 -3.798 1.00 56.15 P
ATOM 26 OP1 G A 263 80.904 103.294 -4.578 1.00 53.50 O
ATOM 27 OP2 G A 263 81.257 100.778 -4.148 1.00 55.46 O
ATOM 28 O5' G A 263 83.124 102.391 -3.810 1.00 53.91 O
TER
ATOM 1 O3' A B 230 92.831 107.705 3.560 1.00 48.05 O
ATOM 2 P A B 231 93.022 108.091 2.006 1.00 50.74 P
ATOM 3 OP1 A B 231 94.473 108.381 1.826 1.00 48.79 O
ATOM 4 OP2 A B 231 92.007 109.108 1.598 1.00 44.13 O
ATOM 5 O5' A B 231 92.663 106.744 1.237 1.00 49.88 O
ATOM 6 C5' A B 231 93.296 105.503 1.587 1.00 51.85 C
ATOM 7 C4' A B 231 92.573 104.355 0.927 1.00 54.52 C
ATOM 8 O4' A B 231 91.227 104.256 1.457 1.00 54.03 O
ATOM 9 C3' A B 231 92.375 104.497 -0.573 1.00 55.23 C
ATOM 10 O3' A B 231 93.552 104.071 -1.256 1.00 57.67 O
ATOM 11 C2' A B 231 91.180 103.582 -0.832 1.00 54.13 C
ATOM 12 O2' A B 231 91.543 102.217 -0.934 1.00 54.16 O
ATOM 13 C1' A B 231 90.354 103.784 0.447 1.00 52.22 C
ATOM 14 N9 A B 231 89.236 104.719 0.328 1.00 49.22 N
ATOM 15 C8 A B 231 89.275 106.085 0.212 1.00 49.86 C
ATOM 16 N7 A B 231 88.092 106.641 0.093 1.00 48.44 N
ATOM 17 C5 A B 231 87.215 105.569 0.141 1.00 47.63 C
ATOM 18 C6 A B 231 85.812 105.489 0.055 1.00 48.38 C
ATOM 19 N6 A B 231 85.014 106.548 -0.128 1.00 47.68 N
ATOM 20 N1 A B 231 85.248 104.264 0.155 1.00 48.23 N
ATOM 21 C2 A B 231 86.048 103.200 0.315 1.00 48.00 C
ATOM 22 N3 A B 231 87.377 103.148 0.395 1.00 47.63 N
ATOM 23 C4 A B 231 87.905 104.380 0.300 1.00 47.97 C
ATOM 24 P C B 232 94.366 105.108 -2.174 1.00 59.66 P
ATOM 25 OP1 C B 232 95.611 104.422 -2.619 1.00 57.23 O
ATOM 26 OP2 C B 232 94.460 106.412 -1.478 1.00 60.05 O
ATOM 27 O5' C B 232 93.407 105.314 -3.421 1.00 57.64 O
TER
Atoms:
OP1: (77.211,98.697,-1.388)
OP2: (79.019,96.873,-1.232)
C3': (81.497,101.445,-1.299)
C1': (82.703,100.842,0.612)
C5': (79.262,100.609,-0.359)
O6: (86.072,95.997,-0.470)
O4': (81.317,100.705,0.898)
C8: (82.532,98.362,0.081)
C2: (86.770,99.406,0.239)
C6: (85.841,97.185,-0.213)
C5: (84.589,97.833,-0.056)
C4: (84.570,99.180,0.232)
P: (78.418,98.138,-0.723)
C4': (80.536,101.379,-0.126)
C2': (82.813,101.756,-0.606)
O2': (82.900,103.105,-0.189)
N1: (86.897,98.071,-0.043)
N2: (87.913,100.094,0.355)
N3: (85.610,100.022,0.391)
N7: (83.298,97.330,-0.149)
N9: (83.241,99.516,0.323)
O5': (79.559,99.252,-0.728)
O3': (81.140,102.424,-2.259)
OP2: (79.019,96.873,-1.232)
C3': (81.497,101.445,-1.299)
C1': (82.703,100.842,0.612)
C5': (79.262,100.609,-0.359)
O6: (86.072,95.997,-0.470)
O4': (81.317,100.705,0.898)
C8: (82.532,98.362,0.081)
C2: (86.770,99.406,0.239)
C6: (85.841,97.185,-0.213)
C5: (84.589,97.833,-0.056)
C4: (84.570,99.180,0.232)
P: (78.418,98.138,-0.723)
C4': (80.536,101.379,-0.126)
C2': (82.813,101.756,-0.606)
O2': (82.900,103.105,-0.189)
N1: (86.897,98.071,-0.043)
N2: (87.913,100.094,0.355)
N3: (85.610,100.022,0.391)
N7: (83.298,97.330,-0.149)
N9: (83.241,99.516,0.323)
O5': (79.559,99.252,-0.728)
O3': (81.140,102.424,-2.259)
OP1: (94.473,108.381,1.826)
OP2: (92.007,109.108,1.598)
C3': (92.375,104.497,-0.573)
C1': (90.354,103.784,0.447)
C5': (93.296,105.503,1.587)
O4': (91.227,104.256,1.457)
C8: (89.275,106.085,0.212)
O2': (91.543,102.217,-0.934)
C6: (85.812,105.489,0.055)
C5: (87.215,105.569,0.141)
C4: (87.905,104.380,0.300)
P: (93.022,108.091,2.006)
C4': (92.573,104.355,0.927)
C2': (91.180,103.582,-0.832)
C2: (86.048,103.200,0.315)
N1: (85.248,104.264,0.155)
N3: (87.377,103.148,0.395)
N6: (85.014,106.548,-0.128)
N7: (88.092,106.641,0.093)
N9: (89.236,104.719,0.328)
O5': (92.663,106.744,1.237)
O3': (93.552,104.071,-1.256)
OP2: (92.007,109.108,1.598)
C3': (92.375,104.497,-0.573)
C1': (90.354,103.784,0.447)
C5': (93.296,105.503,1.587)
O4': (91.227,104.256,1.457)
C8: (89.275,106.085,0.212)
O2': (91.543,102.217,-0.934)
C6: (85.812,105.489,0.055)
C5: (87.215,105.569,0.141)
C4: (87.905,104.380,0.300)
P: (93.022,108.091,2.006)
C4': (92.573,104.355,0.927)
C2': (91.180,103.582,-0.832)
C2: (86.048,103.200,0.315)
N1: (85.248,104.264,0.155)
N3: (87.377,103.148,0.395)
N6: (85.014,106.548,-0.128)
N7: (88.092,106.641,0.093)
N9: (89.236,104.719,0.328)
O5': (92.663,106.744,1.237)
O3': (93.552,104.071,-1.256)
Image (generated by PyMOL):