Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:044:059
Extra
PDB:
ATOM 1 O3' C A 43 64.006 160.895 43.984 1.00 44.97 O
ATOM 2 P G A 44 62.631 161.727 43.896 1.00 44.62 P
ATOM 3 OP1 G A 44 62.694 162.797 44.918 1.00 44.27 O
ATOM 4 OP2 G A 44 61.485 160.781 43.899 1.00 44.23 O
ATOM 5 O5' G A 44 62.729 162.398 42.458 1.00 44.08 O
ATOM 6 C5' G A 44 61.569 162.899 41.787 1.00 46.02 C
ATOM 7 C4' G A 44 61.789 162.872 40.296 1.00 47.18 C
ATOM 8 O4' G A 44 62.163 161.532 39.896 1.00 47.01 O
ATOM 9 C3' G A 44 60.563 163.218 39.468 1.00 48.46 C
ATOM 10 O3' G A 44 60.472 164.625 39.267 1.00 48.05 O
ATOM 11 C2' G A 44 60.808 162.451 38.175 1.00 49.71 C
ATOM 12 O2' G A 44 61.704 163.110 37.302 1.00 52.17 O
ATOM 13 C1' G A 44 61.486 161.184 38.702 1.00 49.33 C
ATOM 14 N9 G A 44 60.569 160.093 39.018 1.00 49.96 N
ATOM 15 C8 G A 44 60.406 159.498 40.245 1.00 50.39 C
ATOM 16 N7 G A 44 59.540 158.527 40.232 1.00 51.69 N
ATOM 17 C5 G A 44 59.097 158.477 38.920 1.00 50.04 C
ATOM 18 C6 G A 44 58.164 157.619 38.312 1.00 49.66 C
ATOM 19 O6 G A 44 57.525 156.695 38.822 1.00 49.85 O
ATOM 20 N1 G A 44 58.002 157.916 36.968 1.00 48.74 N
ATOM 21 C2 G A 44 58.657 158.909 36.297 1.00 48.59 C
ATOM 22 N2 G A 44 58.349 159.040 35.009 1.00 49.48 N
ATOM 23 N3 G A 44 59.543 159.714 36.849 1.00 48.54 N
ATOM 24 C4 G A 44 59.713 159.443 38.157 1.00 49.52 C
ATOM 25 P U A 45 59.082 165.372 39.526 1.00 49.91 P
ATOM 26 OP1 U A 45 59.276 166.814 39.262 1.00 50.76 O
ATOM 27 OP2 U A 45 58.557 164.933 40.835 1.00 51.71 O
ATOM 28 O5' U A 45 58.125 164.789 38.406 1.00 49.56 O
TER
ATOM 1 O3' U B 58 56.232 164.278 26.890 1.00 49.25 O
ATOM 2 P A B 59 55.446 164.647 28.239 1.00 51.45 P
ATOM 3 OP1 A B 59 54.135 165.200 27.823 1.00 52.67 O
ATOM 4 OP2 A B 59 56.334 165.451 29.131 1.00 50.10 O
ATOM 5 O5' A B 59 55.145 163.229 28.898 1.00 50.76 O
ATOM 6 C5' A B 59 56.210 162.336 29.182 1.00 50.69 C
ATOM 7 C4' A B 59 55.775 161.248 30.134 1.00 51.59 C
ATOM 8 O4' A B 59 57.020 160.684 30.626 1.00 53.06 O
ATOM 9 C3' A B 59 54.984 161.664 31.383 1.00 50.23 C
ATOM 10 O3' A B 59 53.594 161.310 31.251 1.00 49.76 O
ATOM 11 C2' A B 59 55.661 160.864 32.487 1.00 51.82 C
ATOM 12 O2' A B 59 55.214 159.523 32.481 1.00 51.47 O
ATOM 13 C1' A B 59 57.112 160.884 32.016 1.00 53.94 C
ATOM 14 N9 A B 59 57.842 162.138 32.254 1.00 55.88 N
ATOM 15 C8 A B 59 57.662 163.361 31.649 1.00 55.08 C
ATOM 16 N7 A B 59 58.476 164.291 32.081 1.00 55.75 N
ATOM 17 C5 A B 59 59.244 163.644 33.039 1.00 55.76 C
ATOM 18 C6 A B 59 60.283 164.085 33.872 1.00 55.81 C
ATOM 19 N6 A B 59 60.743 165.335 33.887 1.00 57.06 N
ATOM 20 N1 A B 59 60.842 163.187 34.706 1.00 56.37 N
ATOM 21 C2 A B 59 60.377 161.937 34.702 1.00 56.64 C
ATOM 22 N3 A B 59 59.406 161.402 33.974 1.00 56.41 N
ATOM 23 C4 A B 59 58.871 162.318 33.151 1.00 55.80 C
ATOM 24 P A B 60 52.561 161.512 32.486 1.00 48.00 P
ATOM 25 OP1 A B 60 51.852 162.803 32.328 1.00 48.64 O
ATOM 26 OP2 A B 60 53.243 161.218 33.755 1.00 48.54 O
ATOM 27 O5' A B 60 51.494 160.349 32.278 1.00 49.83 O
TER
ATOM 2 P G A 44 62.631 161.727 43.896 1.00 44.62 P
ATOM 3 OP1 G A 44 62.694 162.797 44.918 1.00 44.27 O
ATOM 4 OP2 G A 44 61.485 160.781 43.899 1.00 44.23 O
ATOM 5 O5' G A 44 62.729 162.398 42.458 1.00 44.08 O
ATOM 6 C5' G A 44 61.569 162.899 41.787 1.00 46.02 C
ATOM 7 C4' G A 44 61.789 162.872 40.296 1.00 47.18 C
ATOM 8 O4' G A 44 62.163 161.532 39.896 1.00 47.01 O
ATOM 9 C3' G A 44 60.563 163.218 39.468 1.00 48.46 C
ATOM 10 O3' G A 44 60.472 164.625 39.267 1.00 48.05 O
ATOM 11 C2' G A 44 60.808 162.451 38.175 1.00 49.71 C
ATOM 12 O2' G A 44 61.704 163.110 37.302 1.00 52.17 O
ATOM 13 C1' G A 44 61.486 161.184 38.702 1.00 49.33 C
ATOM 14 N9 G A 44 60.569 160.093 39.018 1.00 49.96 N
ATOM 15 C8 G A 44 60.406 159.498 40.245 1.00 50.39 C
ATOM 16 N7 G A 44 59.540 158.527 40.232 1.00 51.69 N
ATOM 17 C5 G A 44 59.097 158.477 38.920 1.00 50.04 C
ATOM 18 C6 G A 44 58.164 157.619 38.312 1.00 49.66 C
ATOM 19 O6 G A 44 57.525 156.695 38.822 1.00 49.85 O
ATOM 20 N1 G A 44 58.002 157.916 36.968 1.00 48.74 N
ATOM 21 C2 G A 44 58.657 158.909 36.297 1.00 48.59 C
ATOM 22 N2 G A 44 58.349 159.040 35.009 1.00 49.48 N
ATOM 23 N3 G A 44 59.543 159.714 36.849 1.00 48.54 N
ATOM 24 C4 G A 44 59.713 159.443 38.157 1.00 49.52 C
ATOM 25 P U A 45 59.082 165.372 39.526 1.00 49.91 P
ATOM 26 OP1 U A 45 59.276 166.814 39.262 1.00 50.76 O
ATOM 27 OP2 U A 45 58.557 164.933 40.835 1.00 51.71 O
ATOM 28 O5' U A 45 58.125 164.789 38.406 1.00 49.56 O
TER
ATOM 1 O3' U B 58 56.232 164.278 26.890 1.00 49.25 O
ATOM 2 P A B 59 55.446 164.647 28.239 1.00 51.45 P
ATOM 3 OP1 A B 59 54.135 165.200 27.823 1.00 52.67 O
ATOM 4 OP2 A B 59 56.334 165.451 29.131 1.00 50.10 O
ATOM 5 O5' A B 59 55.145 163.229 28.898 1.00 50.76 O
ATOM 6 C5' A B 59 56.210 162.336 29.182 1.00 50.69 C
ATOM 7 C4' A B 59 55.775 161.248 30.134 1.00 51.59 C
ATOM 8 O4' A B 59 57.020 160.684 30.626 1.00 53.06 O
ATOM 9 C3' A B 59 54.984 161.664 31.383 1.00 50.23 C
ATOM 10 O3' A B 59 53.594 161.310 31.251 1.00 49.76 O
ATOM 11 C2' A B 59 55.661 160.864 32.487 1.00 51.82 C
ATOM 12 O2' A B 59 55.214 159.523 32.481 1.00 51.47 O
ATOM 13 C1' A B 59 57.112 160.884 32.016 1.00 53.94 C
ATOM 14 N9 A B 59 57.842 162.138 32.254 1.00 55.88 N
ATOM 15 C8 A B 59 57.662 163.361 31.649 1.00 55.08 C
ATOM 16 N7 A B 59 58.476 164.291 32.081 1.00 55.75 N
ATOM 17 C5 A B 59 59.244 163.644 33.039 1.00 55.76 C
ATOM 18 C6 A B 59 60.283 164.085 33.872 1.00 55.81 C
ATOM 19 N6 A B 59 60.743 165.335 33.887 1.00 57.06 N
ATOM 20 N1 A B 59 60.842 163.187 34.706 1.00 56.37 N
ATOM 21 C2 A B 59 60.377 161.937 34.702 1.00 56.64 C
ATOM 22 N3 A B 59 59.406 161.402 33.974 1.00 56.41 N
ATOM 23 C4 A B 59 58.871 162.318 33.151 1.00 55.80 C
ATOM 24 P A B 60 52.561 161.512 32.486 1.00 48.00 P
ATOM 25 OP1 A B 60 51.852 162.803 32.328 1.00 48.64 O
ATOM 26 OP2 A B 60 53.243 161.218 33.755 1.00 48.54 O
ATOM 27 O5' A B 60 51.494 160.349 32.278 1.00 49.83 O
TER
Atoms:
OP1: (62.694,162.797,44.918)
OP2: (61.485,160.781,43.899)
C3': (60.563,163.218,39.468)
C1': (61.486,161.184,38.702)
C5': (61.569,162.899,41.787)
O6: (57.525,156.695,38.822)
O4': (62.163,161.532,39.896)
C8: (60.406,159.498,40.245)
C2: (58.657,158.909,36.297)
C6: (58.164,157.619,38.312)
C5: (59.097,158.477,38.920)
C4: (59.713,159.443,38.157)
P: (62.631,161.727,43.896)
C4': (61.789,162.872,40.296)
C2': (60.808,162.451,38.175)
O2': (61.704,163.110,37.302)
N1: (58.002,157.916,36.968)
N2: (58.349,159.040,35.009)
N3: (59.543,159.714,36.849)
N7: (59.540,158.527,40.232)
N9: (60.569,160.093,39.018)
O5': (62.729,162.398,42.458)
O3': (60.472,164.625,39.267)
OP2: (61.485,160.781,43.899)
C3': (60.563,163.218,39.468)
C1': (61.486,161.184,38.702)
C5': (61.569,162.899,41.787)
O6: (57.525,156.695,38.822)
O4': (62.163,161.532,39.896)
C8: (60.406,159.498,40.245)
C2: (58.657,158.909,36.297)
C6: (58.164,157.619,38.312)
C5: (59.097,158.477,38.920)
C4: (59.713,159.443,38.157)
P: (62.631,161.727,43.896)
C4': (61.789,162.872,40.296)
C2': (60.808,162.451,38.175)
O2': (61.704,163.110,37.302)
N1: (58.002,157.916,36.968)
N2: (58.349,159.040,35.009)
N3: (59.543,159.714,36.849)
N7: (59.540,158.527,40.232)
N9: (60.569,160.093,39.018)
O5': (62.729,162.398,42.458)
O3': (60.472,164.625,39.267)
OP1: (54.135,165.200,27.823)
OP2: (56.334,165.451,29.131)
C3': (54.984,161.664,31.383)
C1': (57.112,160.884,32.016)
C5': (56.210,162.336,29.182)
O4': (57.020,160.684,30.626)
C8: (57.662,163.361,31.649)
O2': (55.214,159.523,32.481)
C6: (60.283,164.085,33.872)
C5: (59.244,163.644,33.039)
C4: (58.871,162.318,33.151)
P: (55.446,164.647,28.239)
C4': (55.775,161.248,30.134)
C2': (55.661,160.864,32.487)
C2: (60.377,161.937,34.702)
N1: (60.842,163.187,34.706)
N3: (59.406,161.402,33.974)
N6: (60.743,165.335,33.887)
N7: (58.476,164.291,32.081)
N9: (57.842,162.138,32.254)
O5': (55.145,163.229,28.898)
O3': (53.594,161.310,31.251)
OP2: (56.334,165.451,29.131)
C3': (54.984,161.664,31.383)
C1': (57.112,160.884,32.016)
C5': (56.210,162.336,29.182)
O4': (57.020,160.684,30.626)
C8: (57.662,163.361,31.649)
O2': (55.214,159.523,32.481)
C6: (60.283,164.085,33.872)
C5: (59.244,163.644,33.039)
C4: (58.871,162.318,33.151)
P: (55.446,164.647,28.239)
C4': (55.775,161.248,30.134)
C2': (55.661,160.864,32.487)
C2: (60.377,161.937,34.702)
N1: (60.842,163.187,34.706)
N3: (59.406,161.402,33.974)
N6: (60.743,165.335,33.887)
N7: (58.476,164.291,32.081)
N9: (57.842,162.138,32.254)
O5': (55.145,163.229,28.898)
O3': (53.594,161.310,31.251)
Image (generated by PyMOL):