ClaRNA

Doublet info:

Details

Nucleotide types: GA
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1VQN:02014:01038

Extra

PDB:
ATOM 1 O3' A A2013 45.538 115.680 118.485 1.00 39.84 O
ATOM 2 P G A2014 46.350 114.828 117.406 1.00 44.09 P
ATOM 3 OP1 G A2014 47.282 113.950 118.167 1.00 43.22 O
ATOM 4 OP2 G A2014 46.884 115.778 116.384 1.00 42.49 O
ATOM 5 O5' G A2014 45.238 113.941 116.688 1.00 43.52 O
ATOM 6 C5' G A2014 44.411 113.034 117.435 1.00 41.87 C
ATOM 7 C4' G A2014 43.206 112.623 116.617 1.00 41.53 C
ATOM 8 O4' G A2014 42.405 113.787 116.284 1.00 40.85 O
ATOM 9 C3' G A2014 43.460 111.995 115.257 1.00 40.31 C
ATOM 10 O3' G A2014 43.806 110.623 115.349 1.00 41.65 O
ATOM 11 C2' G A2014 42.102 112.150 114.601 1.00 42.17 C
ATOM 12 O2' G A2014 41.173 111.230 115.128 1.00 42.98 O
ATOM 13 C1' G A2014 41.709 113.548 115.067 1.00 41.80 C
ATOM 14 N9 G A2014 42.093 114.563 114.092 1.00 42.52 N
ATOM 15 C8 G A2014 43.144 115.448 114.182 1.00 42.97 C
ATOM 16 N7 G A2014 43.238 116.242 113.151 1.00 42.61 N
ATOM 17 C5 G A2014 42.190 115.854 112.322 1.00 42.83 C
ATOM 18 C6 G A2014 41.790 116.348 111.046 1.00 39.36 C
ATOM 19 O6 G A2014 42.299 117.251 110.372 1.00 36.91 O
ATOM 20 N1 G A2014 40.675 115.676 110.565 1.00 38.54 N
ATOM 21 C2 G A2014 40.022 114.663 111.217 1.00 39.00 C
ATOM 22 N2 G A2014 38.953 114.157 110.588 1.00 34.85 N
ATOM 23 N3 G A2014 40.388 114.185 112.401 1.00 41.10 N
ATOM 24 C4 G A2014 41.471 114.822 112.890 1.00 41.68 C
ATOM 25 P U A2015 44.653 109.940 114.173 1.00 40.80 P
ATOM 26 OP1 U A2015 44.943 108.543 114.567 1.00 42.20 O
ATOM 27 OP2 U A2015 45.777 110.859 113.836 1.00 42.27 O
ATOM 28 O5' U A2015 43.654 109.919 112.935 1.00 41.37 O
TER

ATOM 1 O3' A B1037 31.409 108.662 111.472 1.00 42.16 O
ATOM 2 P A B1038 31.705 107.703 110.217 1.00 41.92 P
ATOM 3 OP1 A B1038 30.468 107.700 109.419 1.00 43.32 O
ATOM 4 OP2 A B1038 32.276 106.420 110.704 1.00 40.87 O
ATOM 5 O5' A B1038 32.851 108.454 109.399 1.00 43.86 O
ATOM 6 C5' A B1038 32.639 109.773 108.858 1.00 43.16 C
ATOM 7 C4' A B1038 33.957 110.502 108.728 1.00 45.41 C
ATOM 8 O4' A B1038 34.574 110.582 110.034 1.00 44.06 O
ATOM 9 C3' A B1038 35.018 109.804 107.886 1.00 44.09 C
ATOM 10 O3' A B1038 34.846 110.160 106.520 1.00 45.99 O
ATOM 11 C2' A B1038 36.315 110.425 108.406 1.00 42.47 C
ATOM 12 O2' A B1038 36.641 111.633 107.753 1.00 40.30 O
ATOM 13 C1' A B1038 35.967 110.729 109.872 1.00 41.21 C
ATOM 14 N9 A B1038 36.636 109.908 110.875 1.00 40.08 N
ATOM 15 C8 A B1038 36.603 108.542 111.027 1.00 40.26 C
ATOM 16 N7 A B1038 37.319 108.108 112.037 1.00 38.48 N
ATOM 17 C5 A B1038 37.852 109.264 112.587 1.00 36.06 C
ATOM 18 C6 A B1038 38.687 109.482 113.679 1.00 35.84 C
ATOM 19 N6 A B1038 39.140 108.507 114.470 1.00 34.21 N
ATOM 20 N1 A B1038 39.044 110.755 113.951 1.00 37.23 N
ATOM 21 C2 A B1038 38.576 111.732 113.180 1.00 36.59 C
ATOM 22 N3 A B1038 37.774 111.655 112.129 1.00 40.47 N
ATOM 23 C4 A B1038 37.444 110.377 111.880 1.00 38.10 C
ATOM 24 P C B1039 34.342 109.075 105.447 1.00 47.91 P
ATOM 25 OP1 C B1039 34.038 109.891 104.244 1.00 47.08 O
ATOM 26 OP2 C B1039 33.302 108.192 106.027 1.00 44.79 O
ATOM 27 O5' C B1039 35.602 108.150 105.145 1.00 48.68 O
TER

Atoms:
OP1: (47.282,113.950,118.167)
OP2: (46.884,115.778,116.384)
C3': (43.460,111.995,115.257)
C1': (41.709,113.548,115.067)
C5': (44.411,113.034,117.435)
O6: (42.299,117.251,110.372)
O4': (42.405,113.787,116.284)
C8: (43.144,115.448,114.182)
C2: (40.022,114.663,111.217)
C6: (41.790,116.348,111.046)
C5: (42.190,115.854,112.322)
C4: (41.471,114.822,112.890)
P: (46.350,114.828,117.406)
C4': (43.206,112.623,116.617)
C2': (42.102,112.150,114.601)
O2': (41.173,111.230,115.128)
N1: (40.675,115.676,110.565)
N2: (38.953,114.157,110.588)
N3: (40.388,114.185,112.401)
N7: (43.238,116.242,113.151)
N9: (42.093,114.563,114.092)
O5': (45.238,113.941,116.688)
O3': (43.806,110.623,115.349)
OP1: (30.468,107.700,109.419)
OP2: (32.276,106.420,110.704)
C3': (35.018,109.804,107.886)
C1': (35.967,110.729,109.872)
C5': (32.639,109.773,108.858)
O4': (34.574,110.582,110.034)
C8: (36.603,108.542,111.027)
O2': (36.641,111.633,107.753)
C6: (38.687,109.482,113.679)
C5: (37.852,109.264,112.587)
C4: (37.444,110.377,111.880)
P: (31.705,107.703,110.217)
C4': (33.957,110.502,108.728)
C2': (36.315,110.425,108.406)
C2: (38.576,111.732,113.180)
N1: (39.044,110.755,113.951)
N3: (37.774,111.655,112.129)
N6: (39.140,108.507,114.470)
N7: (37.319,108.108,112.037)
N9: (36.636,109.908,110.875)
O5': (32.851,108.454,109.399)
O3': (34.846,110.160,106.520)
Image (generated by PyMOL):
PyMOL image
show in jmol