Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3R8N:V29:A1337
Extra
PDB:
ATOM 1 O3' G A 28 -125.217 11.370 5.160 1.00 36.41 O
ATOM 2 P G A 29 -124.434 12.449 4.262 1.00 12.12 P
ATOM 3 OP1 G A 29 -125.402 12.993 3.263 1.00 12.12 O
ATOM 4 OP2 G A 29 -123.201 11.774 3.762 1.00 12.12 O
ATOM 5 O5' G A 29 -124.044 13.588 5.330 1.00 12.12 O
ATOM 6 C5' G A 29 -124.970 14.599 5.707 1.00 12.12 C
ATOM 7 C4' G A 29 -124.611 15.224 7.035 1.00 12.12 C
ATOM 8 O4' G A 29 -123.954 14.256 7.895 1.00 12.12 O
ATOM 9 C3' G A 29 -123.626 16.371 6.984 1.00 12.12 C
ATOM 10 O3' G A 29 -124.209 17.576 6.569 1.00 12.12 O
ATOM 11 C2' G A 29 -123.093 16.410 8.404 1.00 12.12 C
ATOM 12 O2' G A 29 -124.023 17.014 9.281 1.00 12.12 O
ATOM 13 C1' G A 29 -123.007 14.919 8.721 1.00 12.12 C
ATOM 14 N9 G A 29 -121.660 14.388 8.422 1.00 11.93 N
ATOM 15 C8 G A 29 -121.297 13.449 7.492 1.00 11.93 C
ATOM 16 N7 G A 29 -120.008 13.238 7.463 1.00 11.93 N
ATOM 17 C5 G A 29 -119.467 14.095 8.413 1.00 11.93 C
ATOM 18 C6 G A 29 -118.113 14.314 8.832 1.00 11.93 C
ATOM 19 O6 G A 29 -117.062 13.798 8.452 1.00 11.93 O
ATOM 20 N1 G A 29 -118.037 15.279 9.817 1.00 11.93 N
ATOM 21 C2 G A 29 -119.126 15.949 10.321 1.00 11.93 C
ATOM 22 N2 G A 29 -118.849 16.843 11.268 1.00 11.93 N
ATOM 23 N3 G A 29 -120.384 15.766 9.956 1.00 11.93 N
ATOM 24 C4 G A 29 -120.486 14.818 9.004 1.00 11.93 C
ATOM 25 P A A 30 -123.368 18.590 5.660 1.00 19.68 P
ATOM 26 OP1 A A 30 -124.271 19.737 5.327 1.00 19.68 O
ATOM 27 OP2 A A 30 -122.760 17.802 4.543 1.00 19.68 O
ATOM 28 O5' A A 30 -122.244 19.060 6.663 1.00 19.68 O
TER
ATOM 1 O3' G B1336 -121.064 20.978 19.380 1.00 19.49 O
ATOM 2 P A B1337 -120.656 22.387 18.728 1.00 27.41 P
ATOM 3 OP1 A B1337 -119.921 23.142 19.776 1.00 27.41 O
ATOM 4 OP2 A B1337 -121.887 22.987 18.143 1.00 27.41 O
ATOM 5 O5' A B1337 -119.653 21.958 17.562 1.00 27.41 O
ATOM 6 C5' A B1337 -118.548 21.102 17.820 1.00 27.41 C
ATOM 7 C4' A B1337 -118.066 20.428 16.555 1.00 27.41 C
ATOM 8 O4' A B1337 -119.087 19.515 16.072 1.00 27.41 O
ATOM 9 C3' A B1337 -117.798 21.350 15.370 1.00 27.41 C
ATOM 10 O3' A B1337 -116.516 21.972 15.413 1.00 27.41 O
ATOM 11 C2' A B1337 -118.005 20.431 14.169 1.00 27.41 C
ATOM 12 O2' A B1337 -116.860 19.635 13.924 1.00 27.41 O
ATOM 13 C1' A B1337 -119.130 19.528 14.661 1.00 27.41 C
ATOM 14 N9 A B1337 -120.451 20.020 14.229 1.00 27.16 N
ATOM 15 C8 A B1337 -121.095 21.173 14.600 1.00 27.16 C
ATOM 16 N7 A B1337 -122.252 21.346 14.011 1.00 27.16 N
ATOM 17 C5 A B1337 -122.373 20.233 13.197 1.00 27.16 C
ATOM 18 C6 A B1337 -123.373 19.811 12.307 1.00 27.16 C
ATOM 19 N6 A B1337 -124.500 20.490 12.095 1.00 27.16 N
ATOM 20 N1 A B1337 -123.192 18.650 11.629 1.00 27.16 N
ATOM 21 C2 A B1337 -122.074 17.955 11.843 1.00 27.16 C
ATOM 22 N3 A B1337 -121.065 18.253 12.662 1.00 27.16 N
ATOM 23 C4 A B1337 -121.272 19.415 13.315 1.00 27.16 C
ATOM 24 P A B1338 -116.376 23.567 15.169 1.00 15.59 P
ATOM 25 OP1 A B1338 -115.029 23.811 14.571 1.00 15.59 O
ATOM 26 OP2 A B1338 -116.720 24.243 16.453 1.00 15.59 O
ATOM 27 O5' A B1338 -117.510 23.846 14.086 1.00 15.59 O
TER
ATOM 2 P G A 29 -124.434 12.449 4.262 1.00 12.12 P
ATOM 3 OP1 G A 29 -125.402 12.993 3.263 1.00 12.12 O
ATOM 4 OP2 G A 29 -123.201 11.774 3.762 1.00 12.12 O
ATOM 5 O5' G A 29 -124.044 13.588 5.330 1.00 12.12 O
ATOM 6 C5' G A 29 -124.970 14.599 5.707 1.00 12.12 C
ATOM 7 C4' G A 29 -124.611 15.224 7.035 1.00 12.12 C
ATOM 8 O4' G A 29 -123.954 14.256 7.895 1.00 12.12 O
ATOM 9 C3' G A 29 -123.626 16.371 6.984 1.00 12.12 C
ATOM 10 O3' G A 29 -124.209 17.576 6.569 1.00 12.12 O
ATOM 11 C2' G A 29 -123.093 16.410 8.404 1.00 12.12 C
ATOM 12 O2' G A 29 -124.023 17.014 9.281 1.00 12.12 O
ATOM 13 C1' G A 29 -123.007 14.919 8.721 1.00 12.12 C
ATOM 14 N9 G A 29 -121.660 14.388 8.422 1.00 11.93 N
ATOM 15 C8 G A 29 -121.297 13.449 7.492 1.00 11.93 C
ATOM 16 N7 G A 29 -120.008 13.238 7.463 1.00 11.93 N
ATOM 17 C5 G A 29 -119.467 14.095 8.413 1.00 11.93 C
ATOM 18 C6 G A 29 -118.113 14.314 8.832 1.00 11.93 C
ATOM 19 O6 G A 29 -117.062 13.798 8.452 1.00 11.93 O
ATOM 20 N1 G A 29 -118.037 15.279 9.817 1.00 11.93 N
ATOM 21 C2 G A 29 -119.126 15.949 10.321 1.00 11.93 C
ATOM 22 N2 G A 29 -118.849 16.843 11.268 1.00 11.93 N
ATOM 23 N3 G A 29 -120.384 15.766 9.956 1.00 11.93 N
ATOM 24 C4 G A 29 -120.486 14.818 9.004 1.00 11.93 C
ATOM 25 P A A 30 -123.368 18.590 5.660 1.00 19.68 P
ATOM 26 OP1 A A 30 -124.271 19.737 5.327 1.00 19.68 O
ATOM 27 OP2 A A 30 -122.760 17.802 4.543 1.00 19.68 O
ATOM 28 O5' A A 30 -122.244 19.060 6.663 1.00 19.68 O
TER
ATOM 1 O3' G B1336 -121.064 20.978 19.380 1.00 19.49 O
ATOM 2 P A B1337 -120.656 22.387 18.728 1.00 27.41 P
ATOM 3 OP1 A B1337 -119.921 23.142 19.776 1.00 27.41 O
ATOM 4 OP2 A B1337 -121.887 22.987 18.143 1.00 27.41 O
ATOM 5 O5' A B1337 -119.653 21.958 17.562 1.00 27.41 O
ATOM 6 C5' A B1337 -118.548 21.102 17.820 1.00 27.41 C
ATOM 7 C4' A B1337 -118.066 20.428 16.555 1.00 27.41 C
ATOM 8 O4' A B1337 -119.087 19.515 16.072 1.00 27.41 O
ATOM 9 C3' A B1337 -117.798 21.350 15.370 1.00 27.41 C
ATOM 10 O3' A B1337 -116.516 21.972 15.413 1.00 27.41 O
ATOM 11 C2' A B1337 -118.005 20.431 14.169 1.00 27.41 C
ATOM 12 O2' A B1337 -116.860 19.635 13.924 1.00 27.41 O
ATOM 13 C1' A B1337 -119.130 19.528 14.661 1.00 27.41 C
ATOM 14 N9 A B1337 -120.451 20.020 14.229 1.00 27.16 N
ATOM 15 C8 A B1337 -121.095 21.173 14.600 1.00 27.16 C
ATOM 16 N7 A B1337 -122.252 21.346 14.011 1.00 27.16 N
ATOM 17 C5 A B1337 -122.373 20.233 13.197 1.00 27.16 C
ATOM 18 C6 A B1337 -123.373 19.811 12.307 1.00 27.16 C
ATOM 19 N6 A B1337 -124.500 20.490 12.095 1.00 27.16 N
ATOM 20 N1 A B1337 -123.192 18.650 11.629 1.00 27.16 N
ATOM 21 C2 A B1337 -122.074 17.955 11.843 1.00 27.16 C
ATOM 22 N3 A B1337 -121.065 18.253 12.662 1.00 27.16 N
ATOM 23 C4 A B1337 -121.272 19.415 13.315 1.00 27.16 C
ATOM 24 P A B1338 -116.376 23.567 15.169 1.00 15.59 P
ATOM 25 OP1 A B1338 -115.029 23.811 14.571 1.00 15.59 O
ATOM 26 OP2 A B1338 -116.720 24.243 16.453 1.00 15.59 O
ATOM 27 O5' A B1338 -117.510 23.846 14.086 1.00 15.59 O
TER
Atoms:
OP1: (-125.402,12.993,3.263)
OP2: (-123.201,11.774,3.762)
C3': (-123.626,16.371,6.984)
C1': (-123.007,14.919,8.721)
C5': (-124.970,14.599,5.707)
O6: (-117.062,13.798,8.452)
O4': (-123.954,14.256,7.895)
C8: (-121.297,13.449,7.492)
C2: (-119.126,15.949,10.321)
C6: (-118.113,14.314,8.832)
C5: (-119.467,14.095,8.413)
C4: (-120.486,14.818,9.004)
P: (-124.434,12.449,4.262)
C4': (-124.611,15.224,7.035)
C2': (-123.093,16.410,8.404)
O2': (-124.023,17.014,9.281)
N1: (-118.037,15.279,9.817)
N2: (-118.849,16.843,11.268)
N3: (-120.384,15.766,9.956)
N7: (-120.008,13.238,7.463)
N9: (-121.660,14.388,8.422)
O5': (-124.044,13.588,5.330)
O3': (-124.209,17.576,6.569)
OP2: (-123.201,11.774,3.762)
C3': (-123.626,16.371,6.984)
C1': (-123.007,14.919,8.721)
C5': (-124.970,14.599,5.707)
O6: (-117.062,13.798,8.452)
O4': (-123.954,14.256,7.895)
C8: (-121.297,13.449,7.492)
C2: (-119.126,15.949,10.321)
C6: (-118.113,14.314,8.832)
C5: (-119.467,14.095,8.413)
C4: (-120.486,14.818,9.004)
P: (-124.434,12.449,4.262)
C4': (-124.611,15.224,7.035)
C2': (-123.093,16.410,8.404)
O2': (-124.023,17.014,9.281)
N1: (-118.037,15.279,9.817)
N2: (-118.849,16.843,11.268)
N3: (-120.384,15.766,9.956)
N7: (-120.008,13.238,7.463)
N9: (-121.660,14.388,8.422)
O5': (-124.044,13.588,5.330)
O3': (-124.209,17.576,6.569)
OP1: (-119.921,23.142,19.776)
OP2: (-121.887,22.987,18.143)
C3': (-117.798,21.350,15.370)
C1': (-119.130,19.528,14.661)
C5': (-118.548,21.102,17.820)
O4': (-119.087,19.515,16.072)
C8: (-121.095,21.173,14.600)
O2': (-116.860,19.635,13.924)
C6: (-123.373,19.811,12.307)
C5: (-122.373,20.233,13.197)
C4: (-121.272,19.415,13.315)
P: (-120.656,22.387,18.728)
C4': (-118.066,20.428,16.555)
C2': (-118.005,20.431,14.169)
C2: (-122.074,17.955,11.843)
N1: (-123.192,18.650,11.629)
N3: (-121.065,18.253,12.662)
N6: (-124.500,20.490,12.095)
N7: (-122.252,21.346,14.011)
N9: (-120.451,20.020,14.229)
O5': (-119.653,21.958,17.562)
O3': (-116.516,21.972,15.413)
OP2: (-121.887,22.987,18.143)
C3': (-117.798,21.350,15.370)
C1': (-119.130,19.528,14.661)
C5': (-118.548,21.102,17.820)
O4': (-119.087,19.515,16.072)
C8: (-121.095,21.173,14.600)
O2': (-116.860,19.635,13.924)
C6: (-123.373,19.811,12.307)
C5: (-122.373,20.233,13.197)
C4: (-121.272,19.415,13.315)
P: (-120.656,22.387,18.728)
C4': (-118.066,20.428,16.555)
C2': (-118.005,20.431,14.169)
C2: (-122.074,17.955,11.843)
N1: (-123.192,18.650,11.629)
N3: (-121.065,18.253,12.662)
N6: (-124.500,20.490,12.095)
N7: (-122.252,21.346,14.011)
N9: (-120.451,20.020,14.229)
O5': (-119.653,21.958,17.562)
O3': (-116.516,21.972,15.413)
Image (generated by PyMOL):