Doublet info:
Details
Nucleotide types:
UA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3MDI:C2:C3
Extra
PDB:
ATOM 1 O3' G A 1 24.513 23.895 -5.586 1.00 27.03 O
ATOM 2 P U A 2 24.465 25.267 -6.402 1.00 29.62 P
ATOM 3 OP1 U A 2 23.656 26.242 -5.623 1.00 24.56 O
ATOM 4 OP2 U A 2 24.141 24.864 -7.791 1.00 25.83 O
ATOM 5 O5' U A 2 25.985 25.717 -6.309 1.00 29.07 O
ATOM 6 C5' U A 2 26.492 26.157 -5.053 1.00 25.80 C
ATOM 7 C4' U A 2 27.993 26.073 -5.029 1.00 25.31 C
ATOM 8 O4' U A 2 28.385 24.679 -4.874 1.00 24.55 O
ATOM 9 C3' U A 2 28.674 26.581 -6.307 1.00 23.24 C
ATOM 10 O3' U A 2 29.833 27.344 -5.974 1.00 23.96 O
ATOM 11 C2' U A 2 29.047 25.288 -7.039 1.00 24.89 C
ATOM 12 O2' U A 2 30.140 25.379 -7.936 1.00 24.74 O
ATOM 13 C1' U A 2 29.328 24.342 -5.874 1.00 20.69 C
ATOM 14 N1 U A 2 29.199 22.909 -6.197 1.00 23.74 N
ATOM 15 C2 U A 2 30.325 22.131 -6.022 1.00 24.44 C
ATOM 16 O2 U A 2 31.367 22.598 -5.615 1.00 21.68 O
ATOM 17 N3 U A 2 30.188 20.799 -6.334 1.00 19.42 N
ATOM 18 C4 U A 2 29.050 20.178 -6.791 1.00 20.89 C
ATOM 19 O4 U A 2 29.076 18.965 -7.027 1.00 21.15 O
ATOM 20 C5 U A 2 27.922 21.050 -6.956 1.00 21.29 C
ATOM 21 C6 U A 2 28.029 22.349 -6.661 1.00 23.55 C
ATOM 22 P A A 3 29.890 28.920 -6.329 1.00 25.68 P
ATOM 23 OP1 A A 3 29.297 29.086 -7.676 1.00 24.21 O
ATOM 24 OP2 A A 3 31.281 29.396 -6.101 1.00 29.18 O
ATOM 25 O5' A A 3 28.956 29.547 -5.216 1.00 26.24 O
TER
ATOM 1 O3' U B 2 29.833 27.344 -5.974 1.00 23.96 O
ATOM 2 P A B 3 29.890 28.920 -6.329 1.00 25.68 P
ATOM 3 OP1 A B 3 29.297 29.086 -7.676 1.00 24.21 O
ATOM 4 OP2 A B 3 31.281 29.396 -6.101 1.00 29.18 O
ATOM 5 O5' A B 3 28.956 29.547 -5.216 1.00 26.24 O
ATOM 6 C5' A B 3 29.340 29.498 -3.848 1.00 22.10 C
ATOM 7 C4' A B 3 28.379 30.302 -3.019 1.00 24.38 C
ATOM 8 O4' A B 3 28.308 31.648 -3.567 1.00 24.36 O
ATOM 9 C3' A B 3 26.955 29.762 -3.048 1.00 24.24 C
ATOM 10 O3' A B 3 26.311 30.066 -1.815 1.00 29.85 O
ATOM 11 C2' A B 3 26.315 30.553 -4.179 1.00 26.14 C
ATOM 12 O2' A B 3 24.912 30.662 -4.096 1.00 29.10 O
ATOM 13 C1' A B 3 26.998 31.909 -4.036 1.00 27.67 C
ATOM 14 N9 A B 3 27.118 32.625 -5.307 1.00 27.21 N
ATOM 15 C8 A B 3 27.918 32.299 -6.369 1.00 25.93 C
ATOM 16 N7 A B 3 27.819 33.134 -7.369 1.00 29.98 N
ATOM 17 C5 A B 3 26.890 34.066 -6.940 1.00 24.59 C
ATOM 18 C6 A B 3 26.356 35.202 -7.552 1.00 27.51 C
ATOM 19 N6 A B 3 26.697 35.608 -8.776 1.00 32.01 N
ATOM 20 N1 A B 3 25.454 35.914 -6.852 1.00 30.71 N
ATOM 21 C2 A B 3 25.119 35.502 -5.627 1.00 25.64 C
ATOM 22 N3 A B 3 25.560 34.453 -4.946 1.00 25.83 N
ATOM 23 C4 A B 3 26.449 33.769 -5.673 1.00 24.74 C
ATOM 24 P A B 4 26.166 28.869 -0.759 1.00 26.30 P
ATOM 25 OP1 A B 4 25.963 27.663 -1.616 1.00 25.44 O
ATOM 26 OP2 A B 4 25.131 29.301 0.217 1.00 25.50 O
ATOM 27 O5' A B 4 27.593 28.756 -0.053 1.00 25.08 O
TER
ATOM 2 P U A 2 24.465 25.267 -6.402 1.00 29.62 P
ATOM 3 OP1 U A 2 23.656 26.242 -5.623 1.00 24.56 O
ATOM 4 OP2 U A 2 24.141 24.864 -7.791 1.00 25.83 O
ATOM 5 O5' U A 2 25.985 25.717 -6.309 1.00 29.07 O
ATOM 6 C5' U A 2 26.492 26.157 -5.053 1.00 25.80 C
ATOM 7 C4' U A 2 27.993 26.073 -5.029 1.00 25.31 C
ATOM 8 O4' U A 2 28.385 24.679 -4.874 1.00 24.55 O
ATOM 9 C3' U A 2 28.674 26.581 -6.307 1.00 23.24 C
ATOM 10 O3' U A 2 29.833 27.344 -5.974 1.00 23.96 O
ATOM 11 C2' U A 2 29.047 25.288 -7.039 1.00 24.89 C
ATOM 12 O2' U A 2 30.140 25.379 -7.936 1.00 24.74 O
ATOM 13 C1' U A 2 29.328 24.342 -5.874 1.00 20.69 C
ATOM 14 N1 U A 2 29.199 22.909 -6.197 1.00 23.74 N
ATOM 15 C2 U A 2 30.325 22.131 -6.022 1.00 24.44 C
ATOM 16 O2 U A 2 31.367 22.598 -5.615 1.00 21.68 O
ATOM 17 N3 U A 2 30.188 20.799 -6.334 1.00 19.42 N
ATOM 18 C4 U A 2 29.050 20.178 -6.791 1.00 20.89 C
ATOM 19 O4 U A 2 29.076 18.965 -7.027 1.00 21.15 O
ATOM 20 C5 U A 2 27.922 21.050 -6.956 1.00 21.29 C
ATOM 21 C6 U A 2 28.029 22.349 -6.661 1.00 23.55 C
ATOM 22 P A A 3 29.890 28.920 -6.329 1.00 25.68 P
ATOM 23 OP1 A A 3 29.297 29.086 -7.676 1.00 24.21 O
ATOM 24 OP2 A A 3 31.281 29.396 -6.101 1.00 29.18 O
ATOM 25 O5' A A 3 28.956 29.547 -5.216 1.00 26.24 O
TER
ATOM 1 O3' U B 2 29.833 27.344 -5.974 1.00 23.96 O
ATOM 2 P A B 3 29.890 28.920 -6.329 1.00 25.68 P
ATOM 3 OP1 A B 3 29.297 29.086 -7.676 1.00 24.21 O
ATOM 4 OP2 A B 3 31.281 29.396 -6.101 1.00 29.18 O
ATOM 5 O5' A B 3 28.956 29.547 -5.216 1.00 26.24 O
ATOM 6 C5' A B 3 29.340 29.498 -3.848 1.00 22.10 C
ATOM 7 C4' A B 3 28.379 30.302 -3.019 1.00 24.38 C
ATOM 8 O4' A B 3 28.308 31.648 -3.567 1.00 24.36 O
ATOM 9 C3' A B 3 26.955 29.762 -3.048 1.00 24.24 C
ATOM 10 O3' A B 3 26.311 30.066 -1.815 1.00 29.85 O
ATOM 11 C2' A B 3 26.315 30.553 -4.179 1.00 26.14 C
ATOM 12 O2' A B 3 24.912 30.662 -4.096 1.00 29.10 O
ATOM 13 C1' A B 3 26.998 31.909 -4.036 1.00 27.67 C
ATOM 14 N9 A B 3 27.118 32.625 -5.307 1.00 27.21 N
ATOM 15 C8 A B 3 27.918 32.299 -6.369 1.00 25.93 C
ATOM 16 N7 A B 3 27.819 33.134 -7.369 1.00 29.98 N
ATOM 17 C5 A B 3 26.890 34.066 -6.940 1.00 24.59 C
ATOM 18 C6 A B 3 26.356 35.202 -7.552 1.00 27.51 C
ATOM 19 N6 A B 3 26.697 35.608 -8.776 1.00 32.01 N
ATOM 20 N1 A B 3 25.454 35.914 -6.852 1.00 30.71 N
ATOM 21 C2 A B 3 25.119 35.502 -5.627 1.00 25.64 C
ATOM 22 N3 A B 3 25.560 34.453 -4.946 1.00 25.83 N
ATOM 23 C4 A B 3 26.449 33.769 -5.673 1.00 24.74 C
ATOM 24 P A B 4 26.166 28.869 -0.759 1.00 26.30 P
ATOM 25 OP1 A B 4 25.963 27.663 -1.616 1.00 25.44 O
ATOM 26 OP2 A B 4 25.131 29.301 0.217 1.00 25.50 O
ATOM 27 O5' A B 4 27.593 28.756 -0.053 1.00 25.08 O
TER
Atoms:
C4: (29.050,20.178,-6.791)
N3: (30.188,20.799,-6.334)
OP1: (23.656,26.242,-5.623)
OP2: (24.141,24.864,-7.791)
C2: (30.325,22.131,-6.022)
C1': (29.328,24.342,-5.874)
C3': (28.674,26.581,-6.307)
O5': (25.985,25.717,-6.309)
O4': (28.385,24.679,-4.874)
C5': (26.492,26.157,-5.053)
P: (24.465,25.267,-6.402)
C4': (27.993,26.073,-5.029)
C2': (29.047,25.288,-7.039)
O2': (30.140,25.379,-7.936)
N1: (29.199,22.909,-6.197)
O4: (29.076,18.965,-7.027)
O2: (31.367,22.598,-5.615)
C6: (28.029,22.349,-6.661)
C5: (27.922,21.050,-6.956)
O3': (29.833,27.344,-5.974)
N3: (30.188,20.799,-6.334)
OP1: (23.656,26.242,-5.623)
OP2: (24.141,24.864,-7.791)
C2: (30.325,22.131,-6.022)
C1': (29.328,24.342,-5.874)
C3': (28.674,26.581,-6.307)
O5': (25.985,25.717,-6.309)
O4': (28.385,24.679,-4.874)
C5': (26.492,26.157,-5.053)
P: (24.465,25.267,-6.402)
C4': (27.993,26.073,-5.029)
C2': (29.047,25.288,-7.039)
O2': (30.140,25.379,-7.936)
N1: (29.199,22.909,-6.197)
O4: (29.076,18.965,-7.027)
O2: (31.367,22.598,-5.615)
C6: (28.029,22.349,-6.661)
C5: (27.922,21.050,-6.956)
O3': (29.833,27.344,-5.974)
OP1: (29.297,29.086,-7.676)
OP2: (31.281,29.396,-6.101)
C3': (26.955,29.762,-3.048)
C1': (26.998,31.909,-4.036)
C5': (29.340,29.498,-3.848)
O4': (28.308,31.648,-3.567)
C8: (27.918,32.299,-6.369)
O2': (24.912,30.662,-4.096)
C6: (26.356,35.202,-7.552)
C5: (26.890,34.066,-6.940)
C4: (26.449,33.769,-5.673)
P: (29.890,28.920,-6.329)
C4': (28.379,30.302,-3.019)
C2': (26.315,30.553,-4.179)
C2: (25.119,35.502,-5.627)
N1: (25.454,35.914,-6.852)
N3: (25.560,34.453,-4.946)
N6: (26.697,35.608,-8.776)
N7: (27.819,33.134,-7.369)
N9: (27.118,32.625,-5.307)
O5': (28.956,29.547,-5.216)
O3': (26.311,30.066,-1.815)
OP2: (31.281,29.396,-6.101)
C3': (26.955,29.762,-3.048)
C1': (26.998,31.909,-4.036)
C5': (29.340,29.498,-3.848)
O4': (28.308,31.648,-3.567)
C8: (27.918,32.299,-6.369)
O2': (24.912,30.662,-4.096)
C6: (26.356,35.202,-7.552)
C5: (26.890,34.066,-6.940)
C4: (26.449,33.769,-5.673)
P: (29.890,28.920,-6.329)
C4': (28.379,30.302,-3.019)
C2': (26.315,30.553,-4.179)
C2: (25.119,35.502,-5.627)
N1: (25.454,35.914,-6.852)
N3: (25.560,34.453,-4.946)
N6: (26.697,35.608,-8.776)
N7: (27.819,33.134,-7.369)
N9: (27.118,32.625,-5.307)
O5': (28.956,29.547,-5.216)
O3': (26.311,30.066,-1.815)
Image (generated by PyMOL):