Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1KD1:B20:B2
Extra
PDB:
ATOM 1 O3' G A 19 58.438 11.566 118.160 1.00 82.18 O
ATOM 2 P G A 20 59.408 10.689 117.218 1.00 83.68 P
ATOM 3 OP1 G A 20 59.086 9.247 117.403 1.00 83.62 O
ATOM 4 OP2 G A 20 60.805 11.162 117.416 1.00 83.37 O
ATOM 5 O5' G A 20 58.945 11.068 115.747 1.00 84.26 O
ATOM 6 C5' G A 20 57.611 10.788 115.293 1.00 88.57 C
ATOM 7 C4' G A 20 57.523 11.013 113.809 1.00 91.42 C
ATOM 8 O4' G A 20 57.698 12.420 113.513 1.00 92.05 O
ATOM 9 C3' G A 20 58.629 10.336 113.029 1.00 93.49 C
ATOM 10 O3' G A 20 58.314 8.968 112.803 1.00 96.85 O
ATOM 11 C2' G A 20 58.685 11.163 111.752 1.00 93.00 C
ATOM 12 O2' G A 20 57.677 10.813 110.818 1.00 92.99 O
ATOM 13 C1' G A 20 58.429 12.568 112.304 1.00 92.15 C
ATOM 14 N9 G A 20 59.648 13.322 112.589 1.00 91.73 N
ATOM 15 C8 G A 20 60.429 13.256 113.719 1.00 91.85 C
ATOM 16 N7 G A 20 61.474 14.036 113.666 1.00 91.61 N
ATOM 17 C5 G A 20 61.374 14.660 112.429 1.00 91.59 C
ATOM 18 C6 G A 20 62.230 15.608 111.798 1.00 91.49 C
ATOM 19 O6 G A 20 63.280 16.098 112.218 1.00 91.93 O
ATOM 20 N1 G A 20 61.753 15.974 110.548 1.00 90.45 N
ATOM 21 C2 G A 20 60.607 15.494 109.972 1.00 90.74 C
ATOM 22 N2 G A 20 60.311 15.980 108.761 1.00 90.67 N
ATOM 23 N3 G A 20 59.808 14.607 110.539 1.00 91.54 N
ATOM 24 C4 G A 20 60.249 14.236 111.758 1.00 91.51 C
ATOM 25 P G A 21 59.496 7.866 112.760 1.00 98.75 P
ATOM 26 OP1 G A 21 59.438 7.022 114.006 1.00 99.31 O
ATOM 27 OP2 G A 21 60.781 8.536 112.414 1.00 97.62 O
ATOM 28 O5' G A 21 59.074 6.986 111.514 1.00101.14 O
TER
ATOM 1 O3' U B 1 54.372 12.777 104.161 1.00122.01 O
ATOM 2 P A B 2 54.413 13.391 102.642 1.00116.69 P
ATOM 3 OP1 A B 2 52.991 13.417 102.284 1.00117.08 O
ATOM 4 OP2 A B 2 55.328 12.714 101.783 1.00117.00 O
ATOM 5 O5' A B 2 55.022 14.880 102.636 1.00111.78 O
ATOM 6 C5' A B 2 54.960 15.689 103.792 1.00103.34 C
ATOM 7 C4' A B 2 56.203 16.556 104.029 1.00 97.17 C
ATOM 8 O4' A B 2 56.977 15.992 105.061 1.00 96.59 O
ATOM 9 C3' A B 2 57.190 16.874 102.947 1.00 93.16 C
ATOM 10 O3' A B 2 58.004 18.058 103.317 1.00 86.69 O
ATOM 11 C2' A B 2 57.982 15.563 103.015 1.00 93.76 C
ATOM 12 O2' A B 2 59.293 15.667 102.591 1.00 93.04 O
ATOM 13 C1' A B 2 58.029 15.254 104.510 1.00 95.81 C
ATOM 14 N9 A B 2 57.887 13.829 104.870 1.00 96.91 N
ATOM 15 C8 A B 2 57.579 12.803 104.011 1.00 97.00 C
ATOM 16 N7 A B 2 57.606 11.608 104.567 1.00 97.19 N
ATOM 17 C5 A B 2 57.918 11.863 105.893 1.00 97.70 C
ATOM 18 C6 A B 2 58.097 11.006 106.985 1.00 98.18 C
ATOM 19 N6 A B 2 58.011 9.679 106.872 1.00 99.19 N
ATOM 20 N1 A B 2 58.391 11.559 108.185 1.00 97.99 N
ATOM 21 C2 A B 2 58.521 12.893 108.259 1.00 97.34 C
ATOM 22 N3 A B 2 58.389 13.815 107.297 1.00 97.46 N
ATOM 23 C4 A B 2 58.083 13.230 106.110 1.00 97.45 C
ATOM 24 P G B 3 58.246 19.322 102.275 1.00 80.07 P
ATOM 25 OP1 G B 3 59.616 19.794 102.256 1.00 79.76 O
ATOM 26 OP2 G B 3 57.171 20.248 102.453 1.00 79.64 O
ATOM 27 O5' G B 3 58.181 18.719 100.825 1.00 76.78 O
TER
ATOM 2 P G A 20 59.408 10.689 117.218 1.00 83.68 P
ATOM 3 OP1 G A 20 59.086 9.247 117.403 1.00 83.62 O
ATOM 4 OP2 G A 20 60.805 11.162 117.416 1.00 83.37 O
ATOM 5 O5' G A 20 58.945 11.068 115.747 1.00 84.26 O
ATOM 6 C5' G A 20 57.611 10.788 115.293 1.00 88.57 C
ATOM 7 C4' G A 20 57.523 11.013 113.809 1.00 91.42 C
ATOM 8 O4' G A 20 57.698 12.420 113.513 1.00 92.05 O
ATOM 9 C3' G A 20 58.629 10.336 113.029 1.00 93.49 C
ATOM 10 O3' G A 20 58.314 8.968 112.803 1.00 96.85 O
ATOM 11 C2' G A 20 58.685 11.163 111.752 1.00 93.00 C
ATOM 12 O2' G A 20 57.677 10.813 110.818 1.00 92.99 O
ATOM 13 C1' G A 20 58.429 12.568 112.304 1.00 92.15 C
ATOM 14 N9 G A 20 59.648 13.322 112.589 1.00 91.73 N
ATOM 15 C8 G A 20 60.429 13.256 113.719 1.00 91.85 C
ATOM 16 N7 G A 20 61.474 14.036 113.666 1.00 91.61 N
ATOM 17 C5 G A 20 61.374 14.660 112.429 1.00 91.59 C
ATOM 18 C6 G A 20 62.230 15.608 111.798 1.00 91.49 C
ATOM 19 O6 G A 20 63.280 16.098 112.218 1.00 91.93 O
ATOM 20 N1 G A 20 61.753 15.974 110.548 1.00 90.45 N
ATOM 21 C2 G A 20 60.607 15.494 109.972 1.00 90.74 C
ATOM 22 N2 G A 20 60.311 15.980 108.761 1.00 90.67 N
ATOM 23 N3 G A 20 59.808 14.607 110.539 1.00 91.54 N
ATOM 24 C4 G A 20 60.249 14.236 111.758 1.00 91.51 C
ATOM 25 P G A 21 59.496 7.866 112.760 1.00 98.75 P
ATOM 26 OP1 G A 21 59.438 7.022 114.006 1.00 99.31 O
ATOM 27 OP2 G A 21 60.781 8.536 112.414 1.00 97.62 O
ATOM 28 O5' G A 21 59.074 6.986 111.514 1.00101.14 O
TER
ATOM 1 O3' U B 1 54.372 12.777 104.161 1.00122.01 O
ATOM 2 P A B 2 54.413 13.391 102.642 1.00116.69 P
ATOM 3 OP1 A B 2 52.991 13.417 102.284 1.00117.08 O
ATOM 4 OP2 A B 2 55.328 12.714 101.783 1.00117.00 O
ATOM 5 O5' A B 2 55.022 14.880 102.636 1.00111.78 O
ATOM 6 C5' A B 2 54.960 15.689 103.792 1.00103.34 C
ATOM 7 C4' A B 2 56.203 16.556 104.029 1.00 97.17 C
ATOM 8 O4' A B 2 56.977 15.992 105.061 1.00 96.59 O
ATOM 9 C3' A B 2 57.190 16.874 102.947 1.00 93.16 C
ATOM 10 O3' A B 2 58.004 18.058 103.317 1.00 86.69 O
ATOM 11 C2' A B 2 57.982 15.563 103.015 1.00 93.76 C
ATOM 12 O2' A B 2 59.293 15.667 102.591 1.00 93.04 O
ATOM 13 C1' A B 2 58.029 15.254 104.510 1.00 95.81 C
ATOM 14 N9 A B 2 57.887 13.829 104.870 1.00 96.91 N
ATOM 15 C8 A B 2 57.579 12.803 104.011 1.00 97.00 C
ATOM 16 N7 A B 2 57.606 11.608 104.567 1.00 97.19 N
ATOM 17 C5 A B 2 57.918 11.863 105.893 1.00 97.70 C
ATOM 18 C6 A B 2 58.097 11.006 106.985 1.00 98.18 C
ATOM 19 N6 A B 2 58.011 9.679 106.872 1.00 99.19 N
ATOM 20 N1 A B 2 58.391 11.559 108.185 1.00 97.99 N
ATOM 21 C2 A B 2 58.521 12.893 108.259 1.00 97.34 C
ATOM 22 N3 A B 2 58.389 13.815 107.297 1.00 97.46 N
ATOM 23 C4 A B 2 58.083 13.230 106.110 1.00 97.45 C
ATOM 24 P G B 3 58.246 19.322 102.275 1.00 80.07 P
ATOM 25 OP1 G B 3 59.616 19.794 102.256 1.00 79.76 O
ATOM 26 OP2 G B 3 57.171 20.248 102.453 1.00 79.64 O
ATOM 27 O5' G B 3 58.181 18.719 100.825 1.00 76.78 O
TER
Atoms:
OP1: (59.086,9.247,117.403)
OP2: (60.805,11.162,117.416)
C3': (58.629,10.336,113.029)
C1': (58.429,12.568,112.304)
C5': (57.611,10.788,115.293)
O6: (63.280,16.098,112.218)
O4': (57.698,12.420,113.513)
C8: (60.429,13.256,113.719)
C2: (60.607,15.494,109.972)
C6: (62.230,15.608,111.798)
C5: (61.374,14.660,112.429)
C4: (60.249,14.236,111.758)
P: (59.408,10.689,117.218)
C4': (57.523,11.013,113.809)
C2': (58.685,11.163,111.752)
O2': (57.677,10.813,110.818)
N1: (61.753,15.974,110.548)
N2: (60.311,15.980,108.761)
N3: (59.808,14.607,110.539)
N7: (61.474,14.036,113.666)
N9: (59.648,13.322,112.589)
O5': (58.945,11.068,115.747)
O3': (58.314,8.968,112.803)
OP2: (60.805,11.162,117.416)
C3': (58.629,10.336,113.029)
C1': (58.429,12.568,112.304)
C5': (57.611,10.788,115.293)
O6: (63.280,16.098,112.218)
O4': (57.698,12.420,113.513)
C8: (60.429,13.256,113.719)
C2: (60.607,15.494,109.972)
C6: (62.230,15.608,111.798)
C5: (61.374,14.660,112.429)
C4: (60.249,14.236,111.758)
P: (59.408,10.689,117.218)
C4': (57.523,11.013,113.809)
C2': (58.685,11.163,111.752)
O2': (57.677,10.813,110.818)
N1: (61.753,15.974,110.548)
N2: (60.311,15.980,108.761)
N3: (59.808,14.607,110.539)
N7: (61.474,14.036,113.666)
N9: (59.648,13.322,112.589)
O5': (58.945,11.068,115.747)
O3': (58.314,8.968,112.803)
OP1: (52.991,13.417,102.284)
OP2: (55.328,12.714,101.783)
C3': (57.190,16.874,102.947)
C1': (58.029,15.254,104.510)
C5': (54.960,15.689,103.792)
O4': (56.977,15.992,105.061)
C8: (57.579,12.803,104.011)
O2': (59.293,15.667,102.591)
C6: (58.097,11.006,106.985)
C5: (57.918,11.863,105.893)
C4: (58.083,13.230,106.110)
P: (54.413,13.391,102.642)
C4': (56.203,16.556,104.029)
C2': (57.982,15.563,103.015)
C2: (58.521,12.893,108.259)
N1: (58.391,11.559,108.185)
N3: (58.389,13.815,107.297)
N6: (58.011,9.679,106.872)
N7: (57.606,11.608,104.567)
N9: (57.887,13.829,104.870)
O5': (55.022,14.880,102.636)
O3': (58.004,18.058,103.317)
OP2: (55.328,12.714,101.783)
C3': (57.190,16.874,102.947)
C1': (58.029,15.254,104.510)
C5': (54.960,15.689,103.792)
O4': (56.977,15.992,105.061)
C8: (57.579,12.803,104.011)
O2': (59.293,15.667,102.591)
C6: (58.097,11.006,106.985)
C5: (57.918,11.863,105.893)
C4: (58.083,13.230,106.110)
P: (54.413,13.391,102.642)
C4': (56.203,16.556,104.029)
C2': (57.982,15.563,103.015)
C2: (58.521,12.893,108.259)
N1: (58.391,11.559,108.185)
N3: (58.389,13.815,107.297)
N6: (58.011,9.679,106.872)
N7: (57.606,11.608,104.567)
N9: (57.887,13.829,104.870)
O5': (55.022,14.880,102.636)
O3': (58.004,18.058,103.317)
Image (generated by PyMOL):