Doublet info:
Details
Nucleotide types:
GC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:01067:01061
Extra
PDB:
ATOM 1 O3' A A1066 11.378 104.419 120.747 1.00 40.98 O
ATOM 2 P G A1067 10.823 105.288 121.981 1.00 42.06 P
ATOM 3 OP1 G A1067 9.691 104.499 122.528 1.00 43.78 O
ATOM 4 OP2 G A1067 10.605 106.699 121.573 1.00 39.55 O
ATOM 5 O5' G A1067 11.998 105.253 123.049 1.00 38.94 O
ATOM 6 C5' G A1067 12.592 104.013 123.421 1.00 37.41 C
ATOM 7 C4' G A1067 12.532 103.831 124.917 1.00 40.22 C
ATOM 8 O4' G A1067 12.998 102.500 125.228 1.00 39.77 O
ATOM 9 C3' G A1067 13.403 104.773 125.739 1.00 41.09 C
ATOM 10 O3' G A1067 12.895 104.840 127.067 1.00 44.39 O
ATOM 11 C2' G A1067 14.706 103.997 125.819 1.00 40.10 C
ATOM 12 O2' G A1067 15.468 104.384 126.938 1.00 39.67 O
ATOM 13 C1' G A1067 14.170 102.581 125.999 1.00 39.36 C
ATOM 14 N9 G A1067 15.035 101.486 125.589 1.00 41.15 N
ATOM 15 C8 G A1067 16.368 101.530 125.276 1.00 42.80 C
ATOM 16 N7 G A1067 16.869 100.353 125.017 1.00 44.92 N
ATOM 17 C5 G A1067 15.796 99.485 125.152 1.00 43.20 C
ATOM 18 C6 G A1067 15.732 98.079 125.016 1.00 44.73 C
ATOM 19 O6 G A1067 16.649 97.289 124.755 1.00 48.12 O
ATOM 20 N1 G A1067 14.441 97.605 125.231 1.00 44.03 N
ATOM 21 C2 G A1067 13.357 98.386 125.545 1.00 43.97 C
ATOM 22 N2 G A1067 12.193 97.751 125.713 1.00 45.97 N
ATOM 23 N3 G A1067 13.409 99.694 125.684 1.00 42.51 N
ATOM 24 C4 G A1067 14.652 100.173 125.478 1.00 42.49 C
ATOM 25 P U A1068 11.710 105.856 127.435 1.00 47.53 P
ATOM 26 OP1 U A1068 10.537 104.987 127.705 1.00 47.73 O
ATOM 27 OP2 U A1068 11.601 106.946 126.425 1.00 45.99 O
ATOM 28 O5' U A1068 12.196 106.484 128.815 1.00 46.72 O
TER
ATOM 1 O3' U B1060 18.640 105.467 123.826 1.00 40.72 O
ATOM 2 P C B1061 18.993 105.143 125.353 1.00 40.48 P
ATOM 3 OP1 C B1061 20.388 104.646 125.416 1.00 42.04 O
ATOM 4 OP2 C B1061 17.894 104.285 125.854 1.00 41.00 O
ATOM 5 O5' C B1061 18.954 106.569 126.064 1.00 35.94 O
ATOM 6 C5' C B1061 17.745 107.073 126.650 1.00 35.40 C
ATOM 7 C4' C B1061 17.908 108.527 127.021 1.00 35.14 C
ATOM 8 O4' C B1061 19.024 108.651 127.934 1.00 34.66 O
ATOM 9 C3' C B1061 18.259 109.468 125.879 1.00 36.49 C
ATOM 10 O3' C B1061 17.093 109.869 125.168 1.00 39.04 O
ATOM 11 C2' C B1061 18.938 110.618 126.611 1.00 35.67 C
ATOM 12 O2' C B1061 18.037 111.472 127.275 1.00 36.48 O
ATOM 13 C1' C B1061 19.721 109.863 127.682 1.00 35.28 C
ATOM 14 N1 C B1061 21.105 109.535 127.281 1.00 34.83 N
ATOM 15 C2 C B1061 22.051 110.563 127.201 1.00 35.42 C
ATOM 16 O2 C B1061 21.703 111.729 127.462 1.00 34.30 O
ATOM 17 N3 C B1061 23.320 110.260 126.844 1.00 36.09 N
ATOM 18 C4 C B1061 23.657 108.995 126.583 1.00 35.32 C
ATOM 19 N4 C B1061 24.921 108.737 126.252 1.00 35.23 N
ATOM 20 C5 C B1061 22.715 107.938 126.652 1.00 34.87 C
ATOM 21 C6 C B1061 21.464 108.247 126.998 1.00 34.78 C
ATOM 22 P C B1062 17.213 110.371 123.645 1.00 40.39 P
ATOM 23 OP1 C B1062 15.837 110.581 123.142 1.00 43.00 O
ATOM 24 OP2 C B1062 18.129 109.480 122.891 1.00 39.87 O
ATOM 25 O5' C B1062 17.895 111.799 123.790 1.00 39.39 O
TER
ATOM 2 P G A1067 10.823 105.288 121.981 1.00 42.06 P
ATOM 3 OP1 G A1067 9.691 104.499 122.528 1.00 43.78 O
ATOM 4 OP2 G A1067 10.605 106.699 121.573 1.00 39.55 O
ATOM 5 O5' G A1067 11.998 105.253 123.049 1.00 38.94 O
ATOM 6 C5' G A1067 12.592 104.013 123.421 1.00 37.41 C
ATOM 7 C4' G A1067 12.532 103.831 124.917 1.00 40.22 C
ATOM 8 O4' G A1067 12.998 102.500 125.228 1.00 39.77 O
ATOM 9 C3' G A1067 13.403 104.773 125.739 1.00 41.09 C
ATOM 10 O3' G A1067 12.895 104.840 127.067 1.00 44.39 O
ATOM 11 C2' G A1067 14.706 103.997 125.819 1.00 40.10 C
ATOM 12 O2' G A1067 15.468 104.384 126.938 1.00 39.67 O
ATOM 13 C1' G A1067 14.170 102.581 125.999 1.00 39.36 C
ATOM 14 N9 G A1067 15.035 101.486 125.589 1.00 41.15 N
ATOM 15 C8 G A1067 16.368 101.530 125.276 1.00 42.80 C
ATOM 16 N7 G A1067 16.869 100.353 125.017 1.00 44.92 N
ATOM 17 C5 G A1067 15.796 99.485 125.152 1.00 43.20 C
ATOM 18 C6 G A1067 15.732 98.079 125.016 1.00 44.73 C
ATOM 19 O6 G A1067 16.649 97.289 124.755 1.00 48.12 O
ATOM 20 N1 G A1067 14.441 97.605 125.231 1.00 44.03 N
ATOM 21 C2 G A1067 13.357 98.386 125.545 1.00 43.97 C
ATOM 22 N2 G A1067 12.193 97.751 125.713 1.00 45.97 N
ATOM 23 N3 G A1067 13.409 99.694 125.684 1.00 42.51 N
ATOM 24 C4 G A1067 14.652 100.173 125.478 1.00 42.49 C
ATOM 25 P U A1068 11.710 105.856 127.435 1.00 47.53 P
ATOM 26 OP1 U A1068 10.537 104.987 127.705 1.00 47.73 O
ATOM 27 OP2 U A1068 11.601 106.946 126.425 1.00 45.99 O
ATOM 28 O5' U A1068 12.196 106.484 128.815 1.00 46.72 O
TER
ATOM 1 O3' U B1060 18.640 105.467 123.826 1.00 40.72 O
ATOM 2 P C B1061 18.993 105.143 125.353 1.00 40.48 P
ATOM 3 OP1 C B1061 20.388 104.646 125.416 1.00 42.04 O
ATOM 4 OP2 C B1061 17.894 104.285 125.854 1.00 41.00 O
ATOM 5 O5' C B1061 18.954 106.569 126.064 1.00 35.94 O
ATOM 6 C5' C B1061 17.745 107.073 126.650 1.00 35.40 C
ATOM 7 C4' C B1061 17.908 108.527 127.021 1.00 35.14 C
ATOM 8 O4' C B1061 19.024 108.651 127.934 1.00 34.66 O
ATOM 9 C3' C B1061 18.259 109.468 125.879 1.00 36.49 C
ATOM 10 O3' C B1061 17.093 109.869 125.168 1.00 39.04 O
ATOM 11 C2' C B1061 18.938 110.618 126.611 1.00 35.67 C
ATOM 12 O2' C B1061 18.037 111.472 127.275 1.00 36.48 O
ATOM 13 C1' C B1061 19.721 109.863 127.682 1.00 35.28 C
ATOM 14 N1 C B1061 21.105 109.535 127.281 1.00 34.83 N
ATOM 15 C2 C B1061 22.051 110.563 127.201 1.00 35.42 C
ATOM 16 O2 C B1061 21.703 111.729 127.462 1.00 34.30 O
ATOM 17 N3 C B1061 23.320 110.260 126.844 1.00 36.09 N
ATOM 18 C4 C B1061 23.657 108.995 126.583 1.00 35.32 C
ATOM 19 N4 C B1061 24.921 108.737 126.252 1.00 35.23 N
ATOM 20 C5 C B1061 22.715 107.938 126.652 1.00 34.87 C
ATOM 21 C6 C B1061 21.464 108.247 126.998 1.00 34.78 C
ATOM 22 P C B1062 17.213 110.371 123.645 1.00 40.39 P
ATOM 23 OP1 C B1062 15.837 110.581 123.142 1.00 43.00 O
ATOM 24 OP2 C B1062 18.129 109.480 122.891 1.00 39.87 O
ATOM 25 O5' C B1062 17.895 111.799 123.790 1.00 39.39 O
TER
Atoms:
OP1: (9.691,104.499,122.528)
OP2: (10.605,106.699,121.573)
C3': (13.403,104.773,125.739)
C1': (14.170,102.581,125.999)
C5': (12.592,104.013,123.421)
O6: (16.649,97.289,124.755)
O4': (12.998,102.500,125.228)
C8: (16.368,101.530,125.276)
C2: (13.357,98.386,125.545)
C6: (15.732,98.079,125.016)
C5: (15.796,99.485,125.152)
C4: (14.652,100.173,125.478)
P: (10.823,105.288,121.981)
C4': (12.532,103.831,124.917)
C2': (14.706,103.997,125.819)
O2': (15.468,104.384,126.938)
N1: (14.441,97.605,125.231)
N2: (12.193,97.751,125.713)
N3: (13.409,99.694,125.684)
N7: (16.869,100.353,125.017)
N9: (15.035,101.486,125.589)
O5': (11.998,105.253,123.049)
O3': (12.895,104.840,127.067)
OP2: (10.605,106.699,121.573)
C3': (13.403,104.773,125.739)
C1': (14.170,102.581,125.999)
C5': (12.592,104.013,123.421)
O6: (16.649,97.289,124.755)
O4': (12.998,102.500,125.228)
C8: (16.368,101.530,125.276)
C2: (13.357,98.386,125.545)
C6: (15.732,98.079,125.016)
C5: (15.796,99.485,125.152)
C4: (14.652,100.173,125.478)
P: (10.823,105.288,121.981)
C4': (12.532,103.831,124.917)
C2': (14.706,103.997,125.819)
O2': (15.468,104.384,126.938)
N1: (14.441,97.605,125.231)
N2: (12.193,97.751,125.713)
N3: (13.409,99.694,125.684)
N7: (16.869,100.353,125.017)
N9: (15.035,101.486,125.589)
O5': (11.998,105.253,123.049)
O3': (12.895,104.840,127.067)
C2: (22.051,110.563,127.201)
OP1: (20.388,104.646,125.416)
OP2: (17.894,104.285,125.854)
C4: (23.657,108.995,126.583)
O5': (18.954,106.569,126.064)
C3': (18.259,109.468,125.879)
C1': (19.721,109.863,127.682)
O4': (19.024,108.651,127.934)
C5': (17.745,107.073,126.650)
P: (18.993,105.143,125.353)
O2: (21.703,111.729,127.462)
C4': (17.908,108.527,127.021)
C2': (18.938,110.618,126.611)
O2': (18.037,111.472,127.275)
N1: (21.105,109.535,127.281)
N3: (23.320,110.260,126.844)
N4: (24.921,108.737,126.252)
C6: (21.464,108.247,126.998)
C5: (22.715,107.938,126.652)
O3': (17.093,109.869,125.168)
OP1: (20.388,104.646,125.416)
OP2: (17.894,104.285,125.854)
C4: (23.657,108.995,126.583)
O5': (18.954,106.569,126.064)
C3': (18.259,109.468,125.879)
C1': (19.721,109.863,127.682)
O4': (19.024,108.651,127.934)
C5': (17.745,107.073,126.650)
P: (18.993,105.143,125.353)
O2: (21.703,111.729,127.462)
C4': (17.908,108.527,127.021)
C2': (18.938,110.618,126.611)
O2': (18.037,111.472,127.275)
N1: (21.105,109.535,127.281)
N3: (23.320,110.260,126.844)
N4: (24.921,108.737,126.252)
C6: (21.464,108.247,126.998)
C5: (22.715,107.938,126.652)
O3': (17.093,109.869,125.168)
Image (generated by PyMOL):