ClaRNA

Doublet info:

Details

Nucleotide types: GA
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1YJN:0219:0654

Extra

PDB:
ATOM 1 O3' C A 218 53.657 91.408 23.443 1.00 45.88 O
ATOM 2 P G A 219 53.205 92.459 22.328 1.00 46.36 P
ATOM 3 OP1 G A 219 52.478 91.677 21.305 1.00 48.96 O
ATOM 4 OP2 G A 219 54.373 93.275 21.928 1.00 47.30 O
ATOM 5 O5' G A 219 52.162 93.381 23.093 1.00 44.00 O
ATOM 6 C5' G A 219 50.947 92.830 23.602 1.00 42.30 C
ATOM 7 C4' G A 219 50.223 93.853 24.428 1.00 43.11 C
ATOM 8 O4' G A 219 50.975 94.139 25.631 1.00 43.57 O
ATOM 9 C3' G A 219 50.080 95.201 23.763 1.00 43.25 C
ATOM 10 O3' G A 219 49.008 95.202 22.840 1.00 46.84 O
ATOM 11 C2' G A 219 49.876 96.130 24.951 1.00 42.12 C
ATOM 12 O2' G A 219 48.578 96.083 25.495 1.00 41.59 O
ATOM 13 C1' G A 219 50.826 95.507 25.967 1.00 42.49 C
ATOM 14 N9 G A 219 52.145 96.124 25.970 1.00 42.43 N
ATOM 15 C8 G A 219 53.314 95.595 25.479 1.00 41.36 C
ATOM 16 N7 G A 219 54.348 96.361 25.688 1.00 42.51 N
ATOM 17 C5 G A 219 53.828 97.470 26.345 1.00 41.86 C
ATOM 18 C6 G A 219 54.475 98.629 26.852 1.00 40.63 C
ATOM 19 O6 G A 219 55.676 98.919 26.817 1.00 38.45 O
ATOM 20 N1 G A 219 53.568 99.496 27.451 1.00 40.19 N
ATOM 21 C2 G A 219 52.217 99.282 27.548 1.00 41.01 C
ATOM 22 N2 G A 219 51.509 100.239 28.153 1.00 42.23 N
ATOM 23 N3 G A 219 51.604 98.209 27.085 1.00 41.33 N
ATOM 24 C4 G A 219 52.466 97.348 26.505 1.00 42.17 C
ATOM 25 P A A 220 48.933 96.355 21.724 1.00 49.00 P
ATOM 26 OP1 A A 220 47.618 96.262 21.025 1.00 46.46 O
ATOM 27 OP2 A A 220 50.206 96.336 20.940 1.00 44.96 O
ATOM 28 O5' A A 220 48.888 97.670 22.605 1.00 46.68 O
TER

ATOM 1 O3' A B 653 45.137 101.320 34.110 1.00 41.29 O
ATOM 2 P A B 654 44.624 102.596 33.288 1.00 43.25 P
ATOM 3 OP1 A B 654 44.569 103.716 34.252 1.00 43.14 O
ATOM 4 OP2 A B 654 43.408 102.240 32.528 1.00 41.82 O
ATOM 5 O5' A B 654 45.809 102.875 32.258 1.00 42.69 O
ATOM 6 C5' A B 654 47.057 103.426 32.714 1.00 41.86 C
ATOM 7 C4' A B 654 48.131 103.250 31.670 1.00 42.37 C
ATOM 8 O4' A B 654 48.303 101.839 31.394 1.00 43.03 O
ATOM 9 C3' A B 654 47.860 103.873 30.312 1.00 41.50 C
ATOM 10 O3' A B 654 48.201 105.247 30.303 1.00 41.91 O
ATOM 11 C2' A B 654 48.760 103.050 29.402 1.00 42.36 C
ATOM 12 O2' A B 654 50.122 103.423 29.467 1.00 40.56 O
ATOM 13 C1' A B 654 48.597 101.657 30.017 1.00 43.82 C
ATOM 14 N9 A B 654 47.482 100.929 29.413 1.00 44.61 N
ATOM 15 C8 A B 654 46.155 101.000 29.755 1.00 43.68 C
ATOM 16 N7 A B 654 45.380 100.261 29.008 1.00 43.95 N
ATOM 17 C5 A B 654 46.251 99.656 28.118 1.00 43.72 C
ATOM 18 C6 A B 654 46.043 98.764 27.064 1.00 44.32 C
ATOM 19 N6 A B 654 44.840 98.306 26.721 1.00 44.78 N
ATOM 20 N1 A B 654 47.124 98.348 26.366 1.00 44.52 N
ATOM 21 C2 A B 654 48.329 98.807 26.722 1.00 44.45 C
ATOM 22 N3 A B 654 48.652 99.651 27.697 1.00 44.77 N
ATOM 23 C4 A B 654 47.552 100.046 28.364 1.00 44.19 C
ATOM 24 P C B 655 47.164 106.322 29.718 1.00 43.96 P
ATOM 25 OP1 C B 655 47.889 107.607 29.637 1.00 44.28 O
ATOM 26 OP2 C B 655 45.886 106.254 30.482 1.00 42.51 O
ATOM 27 O5' C B 655 46.906 105.812 28.233 1.00 44.18 O
TER

Atoms:
OP1: (52.478,91.677,21.305)
OP2: (54.373,93.275,21.928)
C3': (50.080,95.201,23.763)
C1': (50.826,95.507,25.967)
C5': (50.947,92.830,23.602)
O6: (55.676,98.919,26.817)
O4': (50.975,94.139,25.631)
C8: (53.314,95.595,25.479)
C2: (52.217,99.282,27.548)
C6: (54.475,98.629,26.852)
C5: (53.828,97.470,26.345)
C4: (52.466,97.348,26.505)
P: (53.205,92.459,22.328)
C4': (50.223,93.853,24.428)
C2': (49.876,96.130,24.951)
O2': (48.578,96.083,25.495)
N1: (53.568,99.496,27.451)
N2: (51.509,100.239,28.153)
N3: (51.604,98.209,27.085)
N7: (54.348,96.361,25.688)
N9: (52.145,96.124,25.970)
O5': (52.162,93.381,23.093)
O3': (49.008,95.202,22.840)
OP1: (44.569,103.716,34.252)
OP2: (43.408,102.240,32.528)
C3': (47.860,103.873,30.312)
C1': (48.597,101.657,30.017)
C5': (47.057,103.426,32.714)
O4': (48.303,101.839,31.394)
C8: (46.155,101.000,29.755)
O2': (50.122,103.423,29.467)
C6: (46.043,98.764,27.064)
C5: (46.251,99.656,28.118)
C4: (47.552,100.046,28.364)
P: (44.624,102.596,33.288)
C4': (48.131,103.250,31.670)
C2': (48.760,103.050,29.402)
C2: (48.329,98.807,26.722)
N1: (47.124,98.348,26.366)
N3: (48.652,99.651,27.697)
N6: (44.840,98.306,26.721)
N7: (45.380,100.261,29.008)
N9: (47.482,100.929,29.413)
O5': (45.809,102.875,32.258)
O3': (48.201,105.247,30.303)
Image (generated by PyMOL):
PyMOL image
show in jmol