Doublet info:
Details
Nucleotide types:
UA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12937:12938
Extra
PDB:
ATOM 1 O3' A A2936 47.087 28.360 -4.237 1.00 52.61 O
ATOM 2 P U A2937 46.937 26.869 -3.641 1.00 50.03 P
ATOM 3 OP1 U A2937 45.586 26.379 -4.010 1.00 50.16 O
ATOM 4 OP2 U A2937 47.336 26.899 -2.173 1.00 49.41 O
ATOM 5 O5' U A2937 48.029 26.075 -4.453 1.00 50.18 O
ATOM 6 C5' U A2937 47.722 25.443 -5.667 1.00 50.59 C
ATOM 7 C4' U A2937 48.919 24.712 -6.172 1.00 50.63 C
ATOM 8 O4' U A2937 50.117 25.372 -5.661 1.00 50.49 O
ATOM 9 C3' U A2937 49.019 23.272 -5.706 1.00 50.17 C
ATOM 10 O3' U A2937 49.748 22.545 -6.663 1.00 50.43 O
ATOM 11 C2' U A2937 49.869 23.414 -4.467 1.00 49.63 C
ATOM 12 O2' U A2937 50.467 22.215 -4.016 1.00 49.22 O
ATOM 13 C1' U A2937 50.887 24.423 -4.969 1.00 49.99 C
ATOM 14 N1 U A2937 51.660 25.097 -3.900 1.00 49.65 N
ATOM 15 C2 U A2937 53.029 24.936 -3.929 1.00 49.60 C
ATOM 16 O2 U A2937 53.547 24.346 -4.822 1.00 49.86 O
ATOM 17 N3 U A2937 53.750 25.500 -2.923 1.00 49.28 N
ATOM 18 C4 U A2937 53.237 26.206 -1.871 1.00 48.99 C
ATOM 19 O4 U A2937 53.974 26.686 -1.025 1.00 48.73 O
ATOM 20 C5 U A2937 51.825 26.313 -1.866 1.00 49.03 C
ATOM 21 C6 U A2937 51.086 25.778 -2.855 1.00 49.35 C
ATOM 22 P A A2938 49.129 21.238 -7.321 1.00 52.46 P
ATOM 23 OP1 A A2938 48.446 20.476 -6.254 1.00 51.89 O
ATOM 24 OP2 A A2938 50.224 20.579 -8.104 1.00 52.66 O
ATOM 25 O5' A A2938 48.057 21.817 -8.316 1.00 53.04 O
TER
ATOM 1 O3' U B2937 49.748 22.545 -6.663 1.00 50.43 O
ATOM 2 P A B2938 49.129 21.238 -7.321 1.00 52.46 P
ATOM 3 OP1 A B2938 48.446 20.476 -6.254 1.00 51.89 O
ATOM 4 OP2 A B2938 50.224 20.579 -8.104 1.00 52.66 O
ATOM 5 O5' A B2938 48.057 21.817 -8.316 1.00 53.04 O
ATOM 6 C5' A B2938 48.422 22.215 -9.624 1.00 53.68 C
ATOM 7 C4' A B2938 47.216 22.374 -10.483 1.00 54.16 C
ATOM 8 O4' A B2938 46.684 21.065 -10.758 1.00 54.10 O
ATOM 9 C3' A B2938 46.082 23.172 -9.843 1.00 54.05 C
ATOM 10 O3' A B2938 45.340 23.837 -10.863 1.00 54.69 O
ATOM 11 C2' A B2938 45.222 22.078 -9.225 1.00 53.63 C
ATOM 12 O2' A B2938 43.872 22.447 -9.015 1.00 53.67 O
ATOM 13 C1' A B2938 45.361 20.983 -10.277 1.00 53.93 C
ATOM 14 N9 A B2938 45.154 19.630 -9.789 1.00 53.50 N
ATOM 15 C8 A B2938 45.662 19.034 -8.680 1.00 52.88 C
ATOM 16 N7 A B2938 45.298 17.777 -8.572 1.00 52.67 N
ATOM 17 C5 A B2938 44.543 17.544 -9.689 1.00 53.19 C
ATOM 18 C6 A B2938 43.896 16.408 -10.137 1.00 53.28 C
ATOM 19 N6 A B2938 43.914 15.265 -9.466 1.00 52.82 N
ATOM 20 N1 A B2938 43.205 16.508 -11.300 1.00 53.89 N
ATOM 21 C2 A B2938 43.179 17.685 -11.939 1.00 54.36 C
ATOM 22 N3 A B2938 43.771 18.817 -11.611 1.00 54.32 N
ATOM 23 C4 A B2938 44.451 18.669 -10.464 1.00 53.72 C
ATOM 24 P A B2939 45.600 25.378 -11.180 1.00 53.88 P
ATOM 25 OP1 A B2939 45.366 26.134 -9.915 1.00 53.45 O
ATOM 26 OP2 A B2939 44.813 25.729 -12.373 1.00 54.56 O
ATOM 27 O5' A B2939 47.122 25.382 -11.549 1.00 53.98 O
TER
ATOM 2 P U A2937 46.937 26.869 -3.641 1.00 50.03 P
ATOM 3 OP1 U A2937 45.586 26.379 -4.010 1.00 50.16 O
ATOM 4 OP2 U A2937 47.336 26.899 -2.173 1.00 49.41 O
ATOM 5 O5' U A2937 48.029 26.075 -4.453 1.00 50.18 O
ATOM 6 C5' U A2937 47.722 25.443 -5.667 1.00 50.59 C
ATOM 7 C4' U A2937 48.919 24.712 -6.172 1.00 50.63 C
ATOM 8 O4' U A2937 50.117 25.372 -5.661 1.00 50.49 O
ATOM 9 C3' U A2937 49.019 23.272 -5.706 1.00 50.17 C
ATOM 10 O3' U A2937 49.748 22.545 -6.663 1.00 50.43 O
ATOM 11 C2' U A2937 49.869 23.414 -4.467 1.00 49.63 C
ATOM 12 O2' U A2937 50.467 22.215 -4.016 1.00 49.22 O
ATOM 13 C1' U A2937 50.887 24.423 -4.969 1.00 49.99 C
ATOM 14 N1 U A2937 51.660 25.097 -3.900 1.00 49.65 N
ATOM 15 C2 U A2937 53.029 24.936 -3.929 1.00 49.60 C
ATOM 16 O2 U A2937 53.547 24.346 -4.822 1.00 49.86 O
ATOM 17 N3 U A2937 53.750 25.500 -2.923 1.00 49.28 N
ATOM 18 C4 U A2937 53.237 26.206 -1.871 1.00 48.99 C
ATOM 19 O4 U A2937 53.974 26.686 -1.025 1.00 48.73 O
ATOM 20 C5 U A2937 51.825 26.313 -1.866 1.00 49.03 C
ATOM 21 C6 U A2937 51.086 25.778 -2.855 1.00 49.35 C
ATOM 22 P A A2938 49.129 21.238 -7.321 1.00 52.46 P
ATOM 23 OP1 A A2938 48.446 20.476 -6.254 1.00 51.89 O
ATOM 24 OP2 A A2938 50.224 20.579 -8.104 1.00 52.66 O
ATOM 25 O5' A A2938 48.057 21.817 -8.316 1.00 53.04 O
TER
ATOM 1 O3' U B2937 49.748 22.545 -6.663 1.00 50.43 O
ATOM 2 P A B2938 49.129 21.238 -7.321 1.00 52.46 P
ATOM 3 OP1 A B2938 48.446 20.476 -6.254 1.00 51.89 O
ATOM 4 OP2 A B2938 50.224 20.579 -8.104 1.00 52.66 O
ATOM 5 O5' A B2938 48.057 21.817 -8.316 1.00 53.04 O
ATOM 6 C5' A B2938 48.422 22.215 -9.624 1.00 53.68 C
ATOM 7 C4' A B2938 47.216 22.374 -10.483 1.00 54.16 C
ATOM 8 O4' A B2938 46.684 21.065 -10.758 1.00 54.10 O
ATOM 9 C3' A B2938 46.082 23.172 -9.843 1.00 54.05 C
ATOM 10 O3' A B2938 45.340 23.837 -10.863 1.00 54.69 O
ATOM 11 C2' A B2938 45.222 22.078 -9.225 1.00 53.63 C
ATOM 12 O2' A B2938 43.872 22.447 -9.015 1.00 53.67 O
ATOM 13 C1' A B2938 45.361 20.983 -10.277 1.00 53.93 C
ATOM 14 N9 A B2938 45.154 19.630 -9.789 1.00 53.50 N
ATOM 15 C8 A B2938 45.662 19.034 -8.680 1.00 52.88 C
ATOM 16 N7 A B2938 45.298 17.777 -8.572 1.00 52.67 N
ATOM 17 C5 A B2938 44.543 17.544 -9.689 1.00 53.19 C
ATOM 18 C6 A B2938 43.896 16.408 -10.137 1.00 53.28 C
ATOM 19 N6 A B2938 43.914 15.265 -9.466 1.00 52.82 N
ATOM 20 N1 A B2938 43.205 16.508 -11.300 1.00 53.89 N
ATOM 21 C2 A B2938 43.179 17.685 -11.939 1.00 54.36 C
ATOM 22 N3 A B2938 43.771 18.817 -11.611 1.00 54.32 N
ATOM 23 C4 A B2938 44.451 18.669 -10.464 1.00 53.72 C
ATOM 24 P A B2939 45.600 25.378 -11.180 1.00 53.88 P
ATOM 25 OP1 A B2939 45.366 26.134 -9.915 1.00 53.45 O
ATOM 26 OP2 A B2939 44.813 25.729 -12.373 1.00 54.56 O
ATOM 27 O5' A B2939 47.122 25.382 -11.549 1.00 53.98 O
TER
Atoms:
C4: (53.237,26.206,-1.871)
N3: (53.750,25.500,-2.923)
OP1: (45.586,26.379,-4.010)
OP2: (47.336,26.899,-2.173)
C2: (53.029,24.936,-3.929)
C1': (50.887,24.423,-4.969)
C3': (49.019,23.272,-5.706)
O5': (48.029,26.075,-4.453)
O4': (50.117,25.372,-5.661)
C5': (47.722,25.443,-5.667)
P: (46.937,26.869,-3.641)
C4': (48.919,24.712,-6.172)
C2': (49.869,23.414,-4.467)
O2': (50.467,22.215,-4.016)
N1: (51.660,25.097,-3.900)
O4: (53.974,26.686,-1.025)
O2: (53.547,24.346,-4.822)
C6: (51.086,25.778,-2.855)
C5: (51.825,26.313,-1.866)
O3': (49.748,22.545,-6.663)
N3: (53.750,25.500,-2.923)
OP1: (45.586,26.379,-4.010)
OP2: (47.336,26.899,-2.173)
C2: (53.029,24.936,-3.929)
C1': (50.887,24.423,-4.969)
C3': (49.019,23.272,-5.706)
O5': (48.029,26.075,-4.453)
O4': (50.117,25.372,-5.661)
C5': (47.722,25.443,-5.667)
P: (46.937,26.869,-3.641)
C4': (48.919,24.712,-6.172)
C2': (49.869,23.414,-4.467)
O2': (50.467,22.215,-4.016)
N1: (51.660,25.097,-3.900)
O4: (53.974,26.686,-1.025)
O2: (53.547,24.346,-4.822)
C6: (51.086,25.778,-2.855)
C5: (51.825,26.313,-1.866)
O3': (49.748,22.545,-6.663)
OP1: (48.446,20.476,-6.254)
OP2: (50.224,20.579,-8.104)
C3': (46.082,23.172,-9.843)
C1': (45.361,20.983,-10.277)
C5': (48.422,22.215,-9.624)
O4': (46.684,21.065,-10.758)
C8: (45.662,19.034,-8.680)
O2': (43.872,22.447,-9.015)
C6: (43.896,16.408,-10.137)
C5: (44.543,17.544,-9.689)
C4: (44.451,18.669,-10.464)
P: (49.129,21.238,-7.321)
C4': (47.216,22.374,-10.483)
C2': (45.222,22.078,-9.225)
C2: (43.179,17.685,-11.939)
N1: (43.205,16.508,-11.300)
N3: (43.771,18.817,-11.611)
N6: (43.914,15.265,-9.466)
N7: (45.298,17.777,-8.572)
N9: (45.154,19.630,-9.789)
O5': (48.057,21.817,-8.316)
O3': (45.340,23.837,-10.863)
OP2: (50.224,20.579,-8.104)
C3': (46.082,23.172,-9.843)
C1': (45.361,20.983,-10.277)
C5': (48.422,22.215,-9.624)
O4': (46.684,21.065,-10.758)
C8: (45.662,19.034,-8.680)
O2': (43.872,22.447,-9.015)
C6: (43.896,16.408,-10.137)
C5: (44.543,17.544,-9.689)
C4: (44.451,18.669,-10.464)
P: (49.129,21.238,-7.321)
C4': (47.216,22.374,-10.483)
C2': (45.222,22.078,-9.225)
C2: (43.179,17.685,-11.939)
N1: (43.205,16.508,-11.300)
N3: (43.771,18.817,-11.611)
N6: (43.914,15.265,-9.466)
N7: (45.298,17.777,-8.572)
N9: (45.154,19.630,-9.789)
O5': (48.057,21.817,-8.316)
O3': (45.340,23.837,-10.863)
Image (generated by PyMOL):